Wall clock time and date at job start Tue Mar 31 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00272 * 2 1 4 4 H 1.48495 * 109.47320 * 240.00180 * 3 2 1 5 5 H 1.48501 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47178 * 119.99988 * 3 2 1 7 7 C 1.38812 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00175 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47341 * 179.97438 * 10 9 7 12 12 C 1.53036 * 109.46186 * 174.99670 * 11 10 9 13 13 C 1.53190 * 109.31273 * 181.38538 * 12 11 10 14 14 N 1.46923 * 108.77809 * 305.36826 * 13 12 11 15 15 C 1.34784 * 120.62964 * 233.58685 * 14 13 12 16 16 O 1.21279 * 119.99925 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.46497 * 109.47128 * 180.02562 * 17 15 14 19 19 C 1.35311 * 125.86942 * 124.71527 * 18 17 15 20 20 C 1.35355 * 106.17377 * 179.90203 * 19 18 17 21 21 C 1.50701 * 126.74891 * 180.12430 * 20 19 18 22 22 C 1.52998 * 117.49964 * 343.86990 * 21 20 19 23 23 C 1.52997 * 117.49772 * 275.24597 * 21 20 19 24 24 N 1.33767 * 106.49412 * 0.35116 * 20 19 18 25 25 N 1.28633 * 108.89017 * 359.77616 * 24 20 19 26 26 C 1.46927 * 118.73985 * 53.85904 * 14 13 12 27 27 C 1.53041 * 109.46043 * 295.06624 * 11 10 9 28 28 H 0.97006 * 120.00097 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99937 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47466 * 59.99838 * 10 9 7 31 31 H 1.09002 * 109.47194 * 299.99912 * 10 9 7 32 32 H 1.09009 * 109.45892 * 55.02481 * 11 10 9 33 33 H 1.09001 * 109.49825 * 61.43420 * 12 11 10 34 34 H 1.09001 * 109.52568 * 301.35177 * 12 11 10 35 35 H 1.09007 * 109.58645 * 185.57808 * 13 12 11 36 36 H 1.08998 * 109.70504 * 65.22672 * 13 12 11 37 37 H 1.09004 * 109.46932 * 300.00223 * 17 15 14 38 38 H 1.08997 * 109.47392 * 59.99562 * 17 15 14 39 39 H 1.08000 * 126.91256 * 0.02562 * 19 18 17 40 40 H 1.09000 * 115.54942 * 129.57427 * 21 20 19 41 41 H 1.09000 * 117.49810 * 359.97438 * 22 21 20 42 42 H 1.08999 * 117.50042 * 145.02046 * 22 21 20 43 43 H 1.09006 * 117.49532 * 214.97781 * 23 21 20 44 44 H 1.08994 * 117.49979 * 359.97438 * 23 21 20 45 45 H 1.08998 * 109.58645 * 65.92691 * 26 14 13 46 46 H 1.09001 * 109.58579 * 186.35848 * 26 14 13 47 47 H 1.08990 * 109.49710 * 298.56598 * 27 11 10 48 48 H 1.09009 * 109.49418 * 58.62860 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 6 1.8249 -6.1414 -0.1257 13 6 0.8244 -7.3010 -0.1596 14 7 -0.0412 -7.2135 1.0244 15 6 -0.1827 -8.2686 1.8510 16 8 0.4071 -9.3029 1.6205 17 6 -1.0739 -8.1630 3.0617 18 7 -1.0581 -9.4330 3.7919 19 6 -0.7444 -9.5925 5.0985 20 6 -0.8598 -10.9164 5.3550 21 6 -0.6178 -11.6037 6.6742 22 6 0.1527 -10.8277 7.7442 23 6 0.8220 -11.9938 7.0139 24 7 -1.2259 -11.4955 4.2061 25 7 -1.3349 -10.5895 3.2994 26 6 -0.7544 -5.9560 1.2867 27 6 0.2682 -4.8097 1.3075 28 1 -0.4850 0.8401 0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8905 32 1 0.3796 -4.7131 -0.8418 33 1 2.4910 -6.2604 0.7288 34 1 2.4099 -6.1387 -1.0454 35 1 1.3630 -8.2487 -0.1493 36 1 0.2167 -7.2359 -1.0621 37 1 -0.7114 -7.3663 3.7113 38 1 -2.0923 -7.9383 2.7449 39 1 -0.4612 -8.8187 5.7967 40 1 -1.4124 -12.2702 7.0097 41 1 0.4851 -9.8202 7.4938 42 1 -0.1348 -10.9835 8.7839 43 1 0.9748 -12.9168 7.5733 44 1 1.5942 -11.7537 6.2831 45 1 -1.4879 -5.7809 0.4998 46 1 -1.2578 -6.0159 2.2517 47 1 0.9489 -4.9412 2.1485 48 1 -0.2547 -3.8585 1.4079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205455010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:35 Heat of formation + Delta-G solvation = 104.623826 kcal Electronic energy + Delta-G solvation = -28095.315056 eV Core-core repulsion = 24188.835476 eV Total energy + Delta-G solvation = -3906.479580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50770 -40.45350 -38.01347 -37.56478 -35.10326 -34.74008 -33.02939 -31.43357 -30.94961 -30.44501 -29.03618 -26.66398 -24.38555 -24.03198 -23.45714 -23.03305 -22.38443 -21.60460 -20.89408 -20.32866 -19.18658 -18.06599 -17.59183 -17.13439 -16.55643 -15.94021 -15.75851 -15.55141 -14.95006 -14.85302 -14.75458 -14.36342 -14.16494 -13.95837 -13.75458 -13.59224 -13.00274 -12.84879 -12.69946 -12.54011 -12.34175 -11.94955 -11.92641 -11.76809 -11.44508 -11.32249 -11.08971 -11.07471 -10.88903 -10.62996 -10.61149 -10.53456 -10.44947 -10.40277 -10.10035 -9.89608 -9.72739 -9.26028 -8.94194 -8.86376 -6.99562 -5.84246 -3.12561 1.31372 1.86622 2.17777 2.30162 2.70907 3.38811 3.41889 3.43701 3.44274 3.79871 3.97275 4.18054 4.41981 4.47309 4.50832 4.52070 4.58016 4.62440 4.86136 4.87788 4.90911 5.00166 5.03362 5.20164 5.26089 5.26561 5.44349 5.45581 5.50262 5.52684 5.64281 5.72326 5.79002 5.79726 5.80758 5.89935 5.95387 6.05960 6.15114 6.17591 6.29273 6.32297 6.48663 6.70134 6.80763 7.04065 7.63154 7.75621 8.34726 8.35163 9.46446 10.03542 10.38200 11.38557 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002030 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.723637 B =13792.649707 C =14482.175992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.115 3.885 14 N -0.602 5.602 15 C 0.504 3.496 16 O -0.516 6.516 17 C 0.096 3.904 18 N -0.281 5.281 19 C -0.047 4.047 20 C 0.009 3.991 21 C -0.072 4.072 22 C -0.170 4.170 23 C -0.165 4.165 24 N -0.265 5.265 25 N -0.052 5.052 26 C 0.100 3.900 27 C -0.125 4.125 28 H 0.256 0.744 29 H 0.383 0.617 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.189 0.811 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -19.022 12.010 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.007 4.007 14 N -0.336 5.336 15 C 0.289 3.711 16 O -0.391 6.391 17 C -0.030 4.030 18 N -0.074 5.074 19 C -0.197 4.197 20 C -0.128 4.128 21 C -0.092 4.092 22 C -0.208 4.208 23 C -0.203 4.203 24 N -0.132 5.132 25 N -0.031 5.031 26 C -0.022 4.022 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.206 0.794 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.221 -20.199 10.579 23.028 hybrid contribution 0.470 1.998 0.811 2.207 sum -2.751 -18.201 11.390 21.647 Atomic orbital electron populations 1.69632 1.05082 1.25811 1.57794 1.24726 0.95545 0.97686 1.02993 0.86268 0.78541 0.83499 0.77875 1.21267 1.21668 1.21287 1.19184 0.91018 0.84209 1.42733 0.91311 1.42357 1.05769 0.99955 1.89536 1.20664 0.93141 0.85333 0.97836 1.21313 0.97924 0.94474 0.97621 1.21919 0.97680 0.93916 1.02929 1.21684 0.92416 1.00295 0.86327 1.48107 1.46818 1.12576 1.26145 1.20126 0.82804 0.84109 0.84106 1.90817 1.46781 1.28392 1.73125 1.21985 1.03866 0.82417 0.94683 1.46754 1.44520 1.08228 1.07886 1.23260 1.09839 0.99761 0.86855 1.20981 1.06043 0.90561 0.95256 1.19987 0.96477 1.02788 0.89903 1.23025 1.03497 0.97162 0.97079 1.23009 0.94728 0.99474 1.03087 1.75074 1.16689 1.23631 0.97835 1.78447 1.17396 0.86354 1.20945 1.22089 0.95141 0.83201 1.01753 1.22016 0.97822 0.98071 0.98443 0.93454 0.78293 0.96442 0.96296 0.90795 0.91570 0.90384 0.89112 0.91049 0.84554 0.85162 0.79353 0.86043 0.88563 0.87901 0.88054 0.88616 0.90271 0.90278 0.91651 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.26 5.32 -59.91 -0.32 -17.58 16 10 C 0.16 2.91 5.65 -4.04 -0.02 2.89 16 11 C -0.09 -1.30 2.19 -90.58 -0.20 -1.49 16 12 C -0.13 -1.46 5.36 -26.61 -0.14 -1.60 16 13 C 0.11 1.26 6.43 -3.71 -0.02 1.23 16 14 N -0.60 -6.25 2.97 -172.50 -0.51 -6.76 16 15 C 0.50 5.82 7.71 -10.98 -0.08 5.73 16 16 O -0.52 -8.29 15.09 5.56 0.08 -8.21 16 17 C 0.10 0.76 5.28 -5.20 -0.03 0.73 16 18 N -0.28 -3.13 3.20 -62.44 -0.20 -3.33 16 19 C -0.05 -0.45 10.89 -17.05 -0.19 -0.63 16 20 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 21 C -0.07 -0.58 6.33 -91.77 -0.58 -1.17 16 22 C -0.17 -0.98 10.02 -26.73 -0.27 -1.25 16 23 C -0.17 -1.18 10.23 -26.73 -0.27 -1.46 16 24 N -0.27 -3.91 12.41 33.29 0.41 -3.50 16 25 N -0.05 -0.77 12.13 60.35 0.73 -0.04 16 26 C 0.10 0.89 6.37 -3.48 -0.02 0.86 16 27 C -0.13 -1.51 5.26 -26.38 -0.14 -1.65 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 29 H 0.38 9.33 6.84 -40.82 -0.28 9.05 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.10 7.01 -51.93 -0.36 0.73 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.14 0.60 7.63 -51.93 -0.40 0.21 16 38 H 0.13 0.72 7.93 -51.93 -0.41 0.31 16 39 H 0.19 1.01 7.45 -52.49 -0.39 0.62 16 40 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.49 7.23 -51.93 -0.38 0.12 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.09 1.31 7.15 -51.92 -0.37 0.94 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -35.71 390.15 -8.52 -44.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.52 Total: 4.25 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.78 Total: -5.36 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.84 Total: -57.53 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.71 -8.52 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205455010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.853 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds