Wall clock time and date at job start Tue Mar 31 2020 18:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00272 * 2 1 4 4 H 1.48495 * 109.47320 * 240.00180 * 3 2 1 5 5 H 1.48501 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47178 * 119.99988 * 3 2 1 7 7 C 1.38812 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00175 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47341 * 179.97438 * 10 9 7 12 12 C 1.53036 * 109.46186 * 174.99670 * 11 10 9 13 13 C 1.53190 * 109.31273 * 181.38538 * 12 11 10 14 14 N 1.46923 * 108.77809 * 305.36826 * 13 12 11 15 15 C 1.34784 * 120.62964 * 233.58685 * 14 13 12 16 16 O 1.21279 * 119.99925 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.46497 * 109.47128 * 180.02562 * 17 15 14 19 19 C 1.35311 * 125.86942 * 124.71527 * 18 17 15 20 20 C 1.35355 * 106.17377 * 179.90203 * 19 18 17 21 21 C 1.50701 * 126.74891 * 180.12430 * 20 19 18 22 22 C 1.52998 * 117.49964 * 343.86990 * 21 20 19 23 23 C 1.52997 * 117.49772 * 275.24597 * 21 20 19 24 24 N 1.33767 * 106.49412 * 0.35116 * 20 19 18 25 25 N 1.28633 * 108.89017 * 359.77616 * 24 20 19 26 26 C 1.46927 * 118.73985 * 53.85904 * 14 13 12 27 27 C 1.53041 * 109.46043 * 295.06624 * 11 10 9 28 28 H 0.97006 * 120.00097 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99937 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47466 * 59.99838 * 10 9 7 31 31 H 1.09002 * 109.47194 * 299.99912 * 10 9 7 32 32 H 1.09009 * 109.45892 * 55.02481 * 11 10 9 33 33 H 1.09001 * 109.49825 * 61.43420 * 12 11 10 34 34 H 1.09001 * 109.52568 * 301.35177 * 12 11 10 35 35 H 1.09007 * 109.58645 * 185.57808 * 13 12 11 36 36 H 1.08998 * 109.70504 * 65.22672 * 13 12 11 37 37 H 1.09004 * 109.46932 * 300.00223 * 17 15 14 38 38 H 1.08997 * 109.47392 * 59.99562 * 17 15 14 39 39 H 1.08000 * 126.91256 * 0.02562 * 19 18 17 40 40 H 1.09000 * 115.54942 * 129.57427 * 21 20 19 41 41 H 1.09000 * 117.49810 * 359.97438 * 22 21 20 42 42 H 1.08999 * 117.50042 * 145.02046 * 22 21 20 43 43 H 1.09006 * 117.49532 * 214.97781 * 23 21 20 44 44 H 1.08994 * 117.49979 * 359.97438 * 23 21 20 45 45 H 1.08998 * 109.58645 * 65.92691 * 26 14 13 46 46 H 1.09001 * 109.58579 * 186.35848 * 26 14 13 47 47 H 1.08990 * 109.49710 * 298.56598 * 27 11 10 48 48 H 1.09009 * 109.49418 * 58.62860 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 6 1.8249 -6.1414 -0.1257 13 6 0.8244 -7.3010 -0.1596 14 7 -0.0412 -7.2135 1.0244 15 6 -0.1827 -8.2686 1.8510 16 8 0.4071 -9.3029 1.6205 17 6 -1.0739 -8.1630 3.0617 18 7 -1.0581 -9.4330 3.7919 19 6 -0.7444 -9.5925 5.0985 20 6 -0.8598 -10.9164 5.3550 21 6 -0.6178 -11.6037 6.6742 22 6 0.1527 -10.8277 7.7442 23 6 0.8220 -11.9938 7.0139 24 7 -1.2259 -11.4955 4.2061 25 7 -1.3349 -10.5895 3.2994 26 6 -0.7544 -5.9560 1.2867 27 6 0.2682 -4.8097 1.3075 28 1 -0.4850 0.8401 0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8905 32 1 0.3796 -4.7131 -0.8418 33 1 2.4910 -6.2604 0.7288 34 1 2.4099 -6.1387 -1.0454 35 1 1.3630 -8.2487 -0.1493 36 1 0.2167 -7.2359 -1.0621 37 1 -0.7114 -7.3663 3.7113 38 1 -2.0923 -7.9383 2.7449 39 1 -0.4612 -8.8187 5.7967 40 1 -1.4124 -12.2702 7.0097 41 1 0.4851 -9.8202 7.4938 42 1 -0.1348 -10.9835 8.7839 43 1 0.9748 -12.9168 7.5733 44 1 1.5942 -11.7537 6.2831 45 1 -1.4879 -5.7809 0.4998 46 1 -1.2578 -6.0159 2.2517 47 1 0.9489 -4.9412 2.1485 48 1 -0.2547 -3.8585 1.4079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205455010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:34 Heat of formation + Delta-G solvation = 80.751346 kcal Electronic energy + Delta-G solvation = -28096.350245 eV Core-core repulsion = 24188.835476 eV Total energy + Delta-G solvation = -3907.514769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.31113 -41.35214 -39.04564 -38.15460 -36.59530 -35.54623 -34.52336 -32.60628 -31.90796 -31.71088 -29.89123 -28.01846 -25.58203 -25.05694 -24.37814 -23.94332 -23.28348 -22.59340 -21.71595 -21.30581 -20.09093 -19.18732 -18.73290 -18.34064 -17.35767 -16.78088 -16.72452 -16.44263 -16.28077 -15.71056 -15.60455 -15.38662 -15.34952 -15.31970 -14.88894 -14.68238 -14.09030 -13.98328 -13.75131 -13.53070 -13.31880 -13.11623 -12.91682 -12.72447 -12.57638 -12.30761 -12.24496 -12.20109 -12.18122 -11.95202 -11.74675 -11.68271 -11.57549 -11.34331 -11.31956 -11.20255 -10.90883 -10.76555 -9.99881 -9.77303 -8.96477 -7.94091 -5.21321 0.54663 1.20191 1.34908 1.47454 1.48835 1.50362 1.56581 1.91305 2.57003 2.87159 3.08670 3.33732 3.39463 3.66131 3.75074 3.79222 3.88185 3.89410 3.94472 3.99497 4.05121 4.08854 4.26870 4.27792 4.36943 4.39098 4.42027 4.58440 4.72304 4.76616 4.77489 4.82787 4.84485 4.94703 4.97635 5.04376 5.07179 5.18074 5.18723 5.22727 5.26471 5.30009 5.47208 5.50526 5.54902 5.57313 6.21531 6.29110 6.91708 7.36332 7.49931 8.12529 8.37037 9.28701 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002030 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.723637 B =13792.649707 C =14482.175992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.740 5.740 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.114 4.114 13 C 0.117 3.883 14 N -0.598 5.598 15 C 0.501 3.499 16 O -0.569 6.569 17 C 0.091 3.909 18 N -0.279 5.279 19 C -0.033 4.033 20 C -0.008 4.008 21 C -0.090 4.090 22 C -0.144 4.144 23 C -0.175 4.175 24 N -0.308 5.308 25 N -0.100 5.100 26 C 0.106 3.894 27 C -0.120 4.120 28 H 0.252 0.748 29 H 0.377 0.623 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.234 0.766 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.066 0.934 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -18.190 13.907 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.104 4.104 12 C -0.153 4.153 13 C -0.006 4.006 14 N -0.331 5.331 15 C 0.288 3.712 16 O -0.448 6.448 17 C -0.032 4.032 18 N -0.073 5.073 19 C -0.184 4.184 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.181 4.181 23 C -0.213 4.213 24 N -0.175 5.175 25 N -0.079 5.079 26 C -0.015 4.015 27 C -0.159 4.159 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.199 0.801 38 H 0.178 0.822 39 H 0.250 0.750 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.138 0.862 47 H 0.084 0.916 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.285 -19.377 12.454 23.267 hybrid contribution 0.576 1.732 0.213 1.838 sum -2.710 -17.644 12.668 21.889 Atomic orbital electron populations 1.69768 1.06290 1.26096 1.59349 1.25468 0.96407 1.00747 1.03763 0.85293 0.77295 0.79608 0.78042 1.20809 1.22078 1.20502 1.19550 0.91355 0.85601 1.41354 0.91219 1.42515 1.05696 1.00848 1.89301 1.20812 0.93950 0.85113 0.97155 1.21198 0.97072 0.93438 0.98721 1.21794 0.97554 0.92850 1.03071 1.21594 0.92549 0.99131 0.87300 1.48156 1.46408 1.12947 1.25593 1.20733 0.82418 0.83264 0.84768 1.90807 1.49079 1.30382 1.74501 1.22410 1.04782 0.82188 0.93823 1.47016 1.43427 1.08211 1.08614 1.23956 1.07647 1.00110 0.86668 1.21567 1.05972 0.91687 0.95378 1.20092 0.97012 1.04227 0.89716 1.23163 1.00712 0.96962 0.97259 1.23044 0.93677 1.01137 1.03414 1.74995 1.18175 1.24973 0.99320 1.78368 1.19904 0.87760 1.21870 1.22183 0.94021 0.80879 1.04465 1.21911 0.98230 0.98514 0.97220 0.93967 0.78970 0.96653 0.96894 0.91230 0.91963 0.89894 0.90384 0.90055 0.80104 0.82240 0.74978 0.85922 0.87411 0.85865 0.86899 0.90298 0.89419 0.86180 0.91572 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.00 13.06 21.65 0.28 -55.72 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.25 -13.22 9.99 84.03 0.84 -12.38 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.74 -34.87 5.32 -343.46 -1.83 -36.70 16 10 C 0.16 5.69 5.65 86.38 0.49 6.18 16 11 C -0.09 -2.25 2.19 -10.77 -0.02 -2.27 16 12 C -0.11 -2.51 5.36 30.67 0.16 -2.35 16 13 C 0.12 2.42 6.43 86.36 0.56 2.98 16 14 N -0.60 -11.07 2.97 -818.06 -2.43 -13.50 16 15 C 0.50 10.64 7.71 87.66 0.68 11.31 16 16 O -0.57 -18.27 15.09 -3.03 -0.05 -18.31 16 17 C 0.09 1.13 5.28 85.63 0.45 1.59 16 18 N -0.28 -5.71 3.20 -351.47 -1.12 -6.83 16 19 C -0.03 -0.54 10.89 83.49 0.91 0.36 16 20 C -0.01 -0.17 6.88 41.60 0.29 0.11 16 21 C -0.09 -1.38 6.33 -11.54 -0.07 -1.45 16 22 C -0.14 -1.24 10.02 30.59 0.31 -0.93 16 23 C -0.18 -2.32 10.23 30.59 0.31 -2.01 16 24 N -0.31 -9.33 12.41 -48.60 -0.60 -9.93 16 25 N -0.10 -3.00 12.13 37.02 0.45 -2.55 16 26 C 0.11 1.52 6.37 86.51 0.55 2.07 16 27 C -0.12 -2.67 5.26 30.82 0.16 -2.51 16 28 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 29 H 0.38 18.46 6.84 -92.70 -0.63 17.82 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.88 7.01 -2.38 -0.02 1.86 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.18 0.58 7.63 -2.38 -0.02 0.56 16 38 H 0.16 1.07 7.93 -2.39 -0.02 1.05 16 39 H 0.23 1.36 7.45 -2.91 -0.02 1.33 16 40 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 0.68 7.23 -2.39 -0.02 0.66 16 42 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.12 0.77 5.93 -2.39 -0.01 0.76 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 1.92 7.15 -2.38 -0.02 1.90 16 Total: -1.00 -81.40 390.15 3.14 -78.26 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.34 Total: 21.49 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.07 Total: -2.75 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.25 Total: -125.22 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -81.40 3.14 -78.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205455010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.009 kcal (2) G-P(sol) polarization free energy of solvation -81.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds