Wall clock time and date at job start Tue Mar 31 2020 18:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46936 * 270.27389 * 3 2 1 5 5 H 1.48492 * 109.47328 * 30.27754 * 3 2 1 6 6 H 1.48504 * 109.47101 * 150.27753 * 3 2 1 7 7 C 1.38810 * 119.99865 * 180.27754 * 2 1 3 8 8 H 1.07995 * 120.00126 * 179.72682 * 7 2 1 9 9 N 1.36936 * 120.00119 * 359.72204 * 7 2 1 10 10 C 1.46500 * 120.00180 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47503 * 180.02562 * 10 9 7 12 12 C 1.53046 * 109.45991 * 295.07011 * 11 10 9 13 13 C 1.53190 * 109.31112 * 178.61181 * 12 11 10 14 14 N 1.46921 * 108.77682 * 54.63419 * 13 12 11 15 15 C 1.34782 * 120.62983 * 126.36854 * 14 13 12 16 16 O 1.21283 * 119.99789 * 175.32541 * 15 14 13 17 17 C 1.50693 * 120.00000 * 355.32419 * 15 14 13 18 18 H 1.09001 * 109.45680 * 35.36888 * 17 15 14 19 19 C 1.53108 * 109.45792 * 155.33041 * 17 15 14 20 20 C 1.53425 * 109.57746 * 190.09463 * 19 17 15 21 21 C 1.50592 * 108.33697 * 310.18126 * 20 19 17 22 22 N 1.32905 * 129.16946 * 196.47125 * 21 20 19 23 23 N 1.29019 * 108.64001 * 179.90042 * 22 21 20 24 24 N 1.29105 * 110.26012 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.01166 * 180.09693 * 24 23 22 26 26 C 1.34404 * 107.98245 * 0.07261 * 24 23 22 27 27 C 1.50537 * 129.25387 * 179.73042 * 26 24 23 28 28 C 1.46931 * 118.74109 * 306.39017 * 14 13 12 29 29 C 1.53036 * 109.46458 * 175.00201 * 11 10 9 30 30 H 0.96997 * 120.00216 * 359.71991 * 1 2 3 31 31 H 0.96998 * 120.00043 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47205 * 300.00029 * 10 9 7 33 33 H 1.09000 * 109.47335 * 59.99882 * 10 9 7 34 34 H 1.09003 * 109.46144 * 55.02734 * 11 10 9 35 35 H 1.08998 * 109.49567 * 298.56227 * 12 11 10 36 36 H 1.09002 * 109.49644 * 58.66104 * 12 11 10 37 37 H 1.08997 * 109.58949 * 294.84623 * 13 12 11 38 38 H 1.09001 * 109.58832 * 174.42130 * 13 12 11 39 39 H 1.09001 * 109.45370 * 310.12918 * 19 17 15 40 40 H 1.08997 * 109.45412 * 70.06323 * 19 17 15 41 41 H 1.09004 * 109.68871 * 69.89279 * 20 19 17 42 42 H 1.09001 * 109.69165 * 190.43074 * 20 19 17 43 43 H 1.08996 * 109.69039 * 76.84885 * 27 26 24 44 44 H 1.08995 * 109.68868 * 316.27178 * 27 26 24 45 45 H 1.08997 * 109.58312 * 293.82275 * 28 14 13 46 46 H 1.09000 * 109.58807 * 173.39464 * 28 14 13 47 47 H 1.09010 * 109.49346 * 301.33645 * 29 11 10 48 48 H 1.09000 * 109.50182 * 61.39488 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4918 2.0497 -1.4000 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4385 0.6942 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2022 -0.0103 9 7 1.3256 -2.3880 -0.0058 10 6 2.0580 -3.6568 -0.0125 11 6 1.0638 -4.8197 -0.0117 12 6 0.2732 -4.8137 1.2988 13 6 -0.7449 -5.9582 1.2814 14 7 -0.0372 -7.2167 1.0094 15 6 -0.1749 -8.2740 1.8339 16 8 0.3460 -9.3330 1.5541 17 6 -0.9760 -8.1404 3.1032 18 1 -1.8185 -7.4704 2.9320 19 6 -1.4967 -9.5170 3.5250 20 6 -2.5131 -9.3557 4.6629 21 6 -1.9046 -8.4722 5.7198 22 7 -2.2761 -8.2977 6.9839 23 7 -1.4747 -7.4508 7.5361 24 7 -0.5862 -7.0565 6.6864 25 1 0.1273 -6.4228 6.8600 26 6 -0.8234 -7.6790 5.5191 27 6 -0.0846 -7.5666 4.2123 28 6 0.8240 -7.3006 -0.1781 29 6 1.8245 -6.1410 -0.1444 30 1 -0.4850 0.8400 0.0041 31 1 0.3556 -2.3881 -0.0014 32 1 2.6806 -3.7122 -0.9055 33 1 2.6888 -3.7169 0.8744 34 1 0.3765 -4.7106 -0.8507 35 1 0.9571 -4.9478 2.1368 36 1 -0.2497 -3.8631 1.4038 37 1 -1.4837 -5.7783 0.5005 38 1 -1.2415 -6.0202 2.2498 39 1 -1.9779 -9.9994 2.6741 40 1 -0.6637 -10.1312 3.8667 41 1 -3.4239 -8.8958 4.2794 42 1 -2.7457 -10.3318 5.0887 43 1 0.8450 -8.1331 4.2661 44 1 0.1343 -6.5196 4.0031 45 1 0.2131 -7.2301 -1.0781 46 1 1.3626 -8.2482 -0.1727 47 1 2.4057 -6.1351 -1.0666 48 1 2.4943 -6.2623 0.7069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206870068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:11 Heat of formation + Delta-G solvation = 54.379197 kcal Electronic energy + Delta-G solvation = -29112.646446 eV Core-core repulsion = 25203.988095 eV Total energy + Delta-G solvation = -3908.658351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.74981 -40.65117 -38.16149 -36.79117 -35.04292 -34.18949 -32.97482 -31.55692 -30.65070 -30.46968 -30.26361 -26.89611 -25.12572 -24.05044 -23.46531 -23.25192 -22.98528 -21.75282 -20.60340 -19.91139 -18.87559 -18.39182 -17.62477 -17.06300 -16.54709 -15.93420 -15.77199 -14.89086 -14.85963 -14.43643 -14.30188 -14.27201 -14.11094 -13.98172 -13.77664 -13.61368 -13.20289 -12.84606 -12.59373 -12.50272 -12.43521 -12.27259 -11.93246 -11.81015 -11.57226 -11.41048 -11.22087 -11.06863 -10.90712 -10.89676 -10.63072 -10.50596 -10.41704 -10.37807 -10.06974 -9.81662 -9.72014 -9.21226 -8.93938 -8.73863 -6.98776 -5.83766 -3.12094 1.22612 2.20082 2.23141 2.53980 2.80690 3.38365 3.43975 3.45227 3.83792 4.05965 4.25795 4.36361 4.48458 4.52550 4.60736 4.68290 4.87695 4.92927 4.96135 4.99345 5.05937 5.07640 5.13045 5.26300 5.33961 5.38864 5.43712 5.48530 5.56178 5.63510 5.68041 5.71847 5.83164 5.85978 5.86821 5.95650 5.99861 6.08567 6.18213 6.33303 6.34511 6.51189 6.53417 6.71937 6.82364 7.24189 7.63814 7.97272 8.14929 8.35616 9.46931 10.04393 10.38918 11.39112 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002776 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.383141 B =10084.685188 C =11692.179858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.125 4.125 13 C 0.100 3.900 14 N -0.605 5.605 15 C 0.522 3.478 16 O -0.542 6.542 17 C -0.104 4.104 18 H 0.103 0.897 19 C -0.100 4.100 20 C -0.034 4.034 21 C -0.016 4.016 22 N -0.258 5.258 23 N -0.088 5.088 24 N -0.380 5.380 25 H 0.450 0.550 26 C -0.009 4.009 27 C -0.036 4.036 28 C 0.112 3.888 29 C -0.126 4.126 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 -18.996 6.679 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.163 4.163 13 C -0.022 4.022 14 N -0.338 5.338 15 C 0.309 3.691 16 O -0.419 6.419 17 C -0.126 4.126 18 H 0.121 0.879 19 C -0.138 4.138 20 C -0.073 4.073 21 C -0.156 4.156 22 N -0.124 5.124 23 N -0.067 5.067 24 N -0.099 5.099 25 H 0.296 0.704 26 C -0.144 4.144 27 C -0.076 4.076 28 C -0.010 4.010 29 C -0.164 4.164 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.834 -19.389 7.999 21.165 hybrid contribution 1.087 1.684 -0.896 2.195 sum -1.747 -17.706 7.103 19.157 Atomic orbital electron populations 1.69644 1.05083 1.25692 1.57848 1.24724 0.95528 0.97670 1.03021 0.86203 0.78656 0.83853 0.77565 1.21699 1.21759 1.20798 1.19220 0.91025 0.84214 1.42620 0.91286 1.42370 1.05794 0.99976 1.89499 1.20663 0.93150 0.85381 0.97744 1.21309 0.97903 0.94458 0.97636 1.21936 0.97912 0.98226 0.98236 1.21985 0.95074 0.83189 1.01967 1.48198 1.46809 1.12893 1.25912 1.20348 0.80809 0.83422 0.84476 1.90692 1.48989 1.27242 1.74958 1.21375 0.98781 1.00171 0.92241 0.87898 1.21490 0.99275 0.94907 0.98151 1.20008 0.97894 0.98301 0.91073 1.21744 0.97165 1.02478 0.94217 1.74829 1.19718 1.11130 1.06749 1.78592 0.99029 1.12364 1.16711 1.44716 1.24633 1.32550 1.07979 0.70420 1.21743 1.01525 1.00375 0.90802 1.20064 0.97632 1.03167 0.86723 1.21644 0.92527 1.00007 0.86807 1.21914 0.97716 0.94061 1.02746 0.93502 0.78289 0.96370 0.96510 0.90895 0.91888 0.89278 0.90809 0.89836 0.89846 0.90275 0.89558 0.89167 0.88714 0.88895 0.91423 0.89212 0.90582 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.34 5.32 -59.91 -0.32 -17.66 16 10 C 0.16 2.91 5.65 -4.04 -0.02 2.89 16 11 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 12 C -0.12 -1.55 5.25 -26.61 -0.14 -1.69 16 13 C 0.10 0.96 6.27 -3.71 -0.02 0.94 16 14 N -0.61 -6.19 2.97 -172.77 -0.51 -6.70 16 15 C 0.52 5.51 6.77 -10.99 -0.07 5.43 16 16 O -0.54 -7.43 15.69 5.55 0.09 -7.35 16 17 C -0.10 -0.82 1.66 -91.50 -0.15 -0.97 16 18 H 0.10 0.70 6.26 -51.93 -0.33 0.38 16 19 C -0.10 -0.76 4.59 -26.45 -0.12 -0.88 16 20 C -0.03 -0.25 6.30 -27.72 -0.17 -0.43 16 21 C -0.02 -0.16 7.11 -83.13 -0.59 -0.75 16 22 N -0.26 -3.27 12.40 33.16 0.41 -2.85 16 23 N -0.09 -1.04 13.40 60.35 0.81 -0.23 16 24 N -0.38 -3.23 6.97 33.39 0.23 -3.00 16 25 H 0.45 2.23 8.96 -190.08 -1.70 0.53 16 26 C -0.01 -0.07 7.15 -82.49 -0.59 -0.67 16 27 C -0.04 -0.26 5.51 -27.74 -0.15 -0.42 16 28 C 0.11 1.19 6.42 -3.71 -0.02 1.16 16 29 C -0.13 -1.42 5.36 -26.61 -0.14 -1.57 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.38 9.42 6.84 -40.82 -0.28 9.14 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.32 7.15 -51.93 -0.37 0.95 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.64 5.10 -51.93 -0.26 0.38 16 39 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 40 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.70 8.12 -51.93 -0.42 0.27 16 44 H 0.09 0.60 7.81 -51.93 -0.41 0.20 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.00 7.03 -51.93 -0.37 0.64 16 47 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -33.84 377.45 -9.31 -43.15 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.75 Total: 4.16 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.65 Total: -5.52 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 1.34 Total: -56.92 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.84 -9.31 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206870068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.526 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds