Wall clock time and date at job start Tue Mar 31 2020 18:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46936 * 270.27389 * 3 2 1 5 5 H 1.48492 * 109.47328 * 30.27754 * 3 2 1 6 6 H 1.48504 * 109.47101 * 150.27753 * 3 2 1 7 7 C 1.38810 * 119.99865 * 180.27754 * 2 1 3 8 8 H 1.07995 * 120.00126 * 179.72682 * 7 2 1 9 9 N 1.36936 * 120.00119 * 359.72204 * 7 2 1 10 10 C 1.46500 * 120.00180 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47503 * 180.02562 * 10 9 7 12 12 C 1.53046 * 109.45991 * 295.07011 * 11 10 9 13 13 C 1.53190 * 109.31112 * 178.61181 * 12 11 10 14 14 N 1.46921 * 108.77682 * 54.63419 * 13 12 11 15 15 C 1.34782 * 120.62983 * 126.36854 * 14 13 12 16 16 O 1.21283 * 119.99789 * 175.32541 * 15 14 13 17 17 C 1.50693 * 120.00000 * 355.32419 * 15 14 13 18 18 H 1.09001 * 109.45680 * 35.36888 * 17 15 14 19 19 C 1.53108 * 109.45792 * 155.33041 * 17 15 14 20 20 C 1.53425 * 109.57746 * 190.09463 * 19 17 15 21 21 C 1.50592 * 108.33697 * 310.18126 * 20 19 17 22 22 N 1.32905 * 129.16946 * 196.47125 * 21 20 19 23 23 N 1.29019 * 108.64001 * 179.90042 * 22 21 20 24 24 N 1.29105 * 110.26012 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.01166 * 180.09693 * 24 23 22 26 26 C 1.34404 * 107.98245 * 0.07261 * 24 23 22 27 27 C 1.50537 * 129.25387 * 179.73042 * 26 24 23 28 28 C 1.46931 * 118.74109 * 306.39017 * 14 13 12 29 29 C 1.53036 * 109.46458 * 175.00201 * 11 10 9 30 30 H 0.96997 * 120.00216 * 359.71991 * 1 2 3 31 31 H 0.96998 * 120.00043 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47205 * 300.00029 * 10 9 7 33 33 H 1.09000 * 109.47335 * 59.99882 * 10 9 7 34 34 H 1.09003 * 109.46144 * 55.02734 * 11 10 9 35 35 H 1.08998 * 109.49567 * 298.56227 * 12 11 10 36 36 H 1.09002 * 109.49644 * 58.66104 * 12 11 10 37 37 H 1.08997 * 109.58949 * 294.84623 * 13 12 11 38 38 H 1.09001 * 109.58832 * 174.42130 * 13 12 11 39 39 H 1.09001 * 109.45370 * 310.12918 * 19 17 15 40 40 H 1.08997 * 109.45412 * 70.06323 * 19 17 15 41 41 H 1.09004 * 109.68871 * 69.89279 * 20 19 17 42 42 H 1.09001 * 109.69165 * 190.43074 * 20 19 17 43 43 H 1.08996 * 109.69039 * 76.84885 * 27 26 24 44 44 H 1.08995 * 109.68868 * 316.27178 * 27 26 24 45 45 H 1.08997 * 109.58312 * 293.82275 * 28 14 13 46 46 H 1.09000 * 109.58807 * 173.39464 * 28 14 13 47 47 H 1.09010 * 109.49346 * 301.33645 * 29 11 10 48 48 H 1.09000 * 109.50182 * 61.39488 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4918 2.0497 -1.4000 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4385 0.6942 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2022 -0.0103 9 7 1.3256 -2.3880 -0.0058 10 6 2.0580 -3.6568 -0.0125 11 6 1.0638 -4.8197 -0.0117 12 6 0.2732 -4.8137 1.2988 13 6 -0.7449 -5.9582 1.2814 14 7 -0.0372 -7.2167 1.0094 15 6 -0.1749 -8.2740 1.8339 16 8 0.3460 -9.3330 1.5541 17 6 -0.9760 -8.1404 3.1032 18 1 -1.8185 -7.4704 2.9320 19 6 -1.4967 -9.5170 3.5250 20 6 -2.5131 -9.3557 4.6629 21 6 -1.9046 -8.4722 5.7198 22 7 -2.2761 -8.2977 6.9839 23 7 -1.4747 -7.4508 7.5361 24 7 -0.5862 -7.0565 6.6864 25 1 0.1273 -6.4228 6.8600 26 6 -0.8234 -7.6790 5.5191 27 6 -0.0846 -7.5666 4.2123 28 6 0.8240 -7.3006 -0.1781 29 6 1.8245 -6.1410 -0.1444 30 1 -0.4850 0.8400 0.0041 31 1 0.3556 -2.3881 -0.0014 32 1 2.6806 -3.7122 -0.9055 33 1 2.6888 -3.7169 0.8744 34 1 0.3765 -4.7106 -0.8507 35 1 0.9571 -4.9478 2.1368 36 1 -0.2497 -3.8631 1.4038 37 1 -1.4837 -5.7783 0.5005 38 1 -1.2415 -6.0202 2.2498 39 1 -1.9779 -9.9994 2.6741 40 1 -0.6637 -10.1312 3.8667 41 1 -3.4239 -8.8958 4.2794 42 1 -2.7457 -10.3318 5.0887 43 1 0.8450 -8.1331 4.2661 44 1 0.1343 -6.5196 4.0031 45 1 0.2131 -7.2301 -1.0781 46 1 1.3626 -8.2482 -0.1727 47 1 2.4057 -6.1351 -1.0666 48 1 2.4943 -6.2623 0.7069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206870068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:10 Heat of formation + Delta-G solvation = 31.722361 kcal Electronic energy + Delta-G solvation = -29113.628920 eV Core-core repulsion = 25203.988095 eV Total energy + Delta-G solvation = -3909.640825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.49306 -41.49295 -39.14560 -37.56767 -36.53179 -34.94842 -34.43915 -32.64441 -31.90652 -31.32120 -31.11766 -28.24122 -26.11513 -25.25465 -24.42521 -24.17123 -23.83725 -22.96176 -21.59674 -20.77532 -19.68719 -19.18446 -19.07213 -18.28153 -17.32660 -16.78561 -16.66826 -16.53762 -15.69592 -15.62378 -15.35990 -15.29925 -15.00595 -14.92147 -14.89582 -14.63318 -14.15709 -13.98551 -13.87220 -13.51370 -13.21362 -13.15689 -13.02128 -12.87018 -12.75135 -12.58650 -12.25764 -12.19166 -12.16845 -11.99673 -11.93611 -11.65886 -11.57857 -11.47505 -11.29880 -11.28465 -10.91355 -10.67559 -9.93074 -9.62367 -8.96297 -7.94390 -5.21546 0.50545 1.43265 1.47912 1.48156 1.48773 1.56948 1.84948 2.01732 2.56613 3.16333 3.37465 3.39561 3.60978 3.72824 3.79164 3.79654 3.86173 3.95651 3.97941 4.16122 4.18799 4.32291 4.35119 4.41718 4.45668 4.48817 4.56267 4.63604 4.73889 4.77578 4.80312 4.88610 4.91338 4.99732 4.99823 5.09345 5.11300 5.12816 5.20865 5.22680 5.32268 5.36667 5.49442 5.57478 5.62559 5.93505 6.28905 6.42505 7.15322 7.35994 7.37802 8.13053 8.36570 9.28773 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002776 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.383141 B =10084.685188 C =11692.179858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.120 4.120 13 C 0.108 3.892 14 N -0.604 5.604 15 C 0.525 3.475 16 O -0.574 6.574 17 C -0.099 4.099 18 H 0.120 0.880 19 C -0.093 4.093 20 C -0.029 4.029 21 C -0.028 4.028 22 N -0.292 5.292 23 N -0.117 5.117 24 N -0.366 5.366 25 H 0.464 0.536 26 C 0.000 4.000 27 C -0.031 4.031 28 C 0.115 3.885 29 C -0.115 4.115 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.014 0.986 33 H 0.017 0.983 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -19.510 6.516 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.030 3.970 11 C -0.104 4.104 12 C -0.158 4.158 13 C -0.014 4.014 14 N -0.336 5.336 15 C 0.314 3.686 16 O -0.453 6.453 17 C -0.121 4.121 18 H 0.138 0.862 19 C -0.132 4.132 20 C -0.068 4.068 21 C -0.169 4.169 22 N -0.157 5.157 23 N -0.095 5.095 24 N -0.087 5.087 25 H 0.313 0.687 26 C -0.137 4.137 27 C -0.070 4.070 28 C -0.008 4.008 29 C -0.154 4.154 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.448 -19.912 7.855 21.544 hybrid contribution 1.061 1.801 -0.891 2.272 sum -1.387 -18.110 6.964 19.453 Atomic orbital electron populations 1.69782 1.06361 1.25981 1.59542 1.25464 0.96360 1.00754 1.03860 0.85229 0.77785 0.79959 0.77341 1.21640 1.22196 1.19639 1.19588 0.91371 0.85570 1.41049 0.91106 1.42552 1.05695 1.00970 1.89262 1.20826 0.93939 0.85026 0.97206 1.21194 0.97032 0.93807 0.98342 1.21829 0.98273 0.98251 0.97434 1.21961 0.94134 0.81640 1.03667 1.48235 1.46606 1.13024 1.25725 1.20698 0.80297 0.82765 0.84840 1.90687 1.50396 1.28489 1.75752 1.21381 0.98914 1.00815 0.90996 0.86213 1.21420 0.98930 0.94605 0.98200 1.20066 0.98152 0.98287 0.90296 1.22217 0.97708 1.02994 0.93969 1.74788 1.20778 1.12075 1.08099 1.78529 1.00073 1.13300 1.17637 1.44744 1.24263 1.32170 1.07553 0.68742 1.21918 1.01012 0.99605 0.91127 1.20080 0.97309 1.04007 0.85615 1.21595 0.92519 0.99215 0.87426 1.21810 0.97649 0.92741 1.03158 0.94030 0.79091 0.96777 0.96548 0.91545 0.91505 0.91814 0.90217 0.87368 0.89400 0.91317 0.88210 0.88676 0.88474 0.87518 0.90575 0.89557 0.89902 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.66 13.06 21.65 0.28 -56.38 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 44.74 29.55 68.60 2.03 46.77 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 8 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 9 N -0.74 -35.09 5.32 -343.46 -1.83 -36.92 16 10 C 0.16 5.65 5.65 86.38 0.49 6.14 16 11 C -0.08 -2.23 2.19 -10.77 -0.02 -2.25 16 12 C -0.12 -2.77 5.25 30.67 0.16 -2.61 16 13 C 0.11 1.78 6.27 86.36 0.54 2.32 16 14 N -0.60 -10.80 2.97 -818.92 -2.43 -13.23 16 15 C 0.53 9.79 6.77 87.65 0.59 10.39 16 16 O -0.57 -14.73 15.69 -3.04 -0.05 -14.77 16 17 C -0.10 -1.29 1.66 -11.36 -0.02 -1.31 16 18 H 0.12 1.19 6.26 -2.39 -0.01 1.18 16 19 C -0.09 -1.22 4.59 30.77 0.14 -1.08 16 20 C -0.03 -0.38 6.30 29.96 0.19 -0.19 16 21 C -0.03 -0.53 7.11 41.75 0.30 -0.23 16 22 N -0.29 -7.23 12.40 -48.99 -0.61 -7.84 16 23 N -0.12 -2.70 13.40 37.02 0.50 -2.20 16 24 N -0.37 -5.74 6.97 -48.26 -0.34 -6.08 16 25 H 0.46 3.90 8.96 -219.68 -1.97 1.93 16 26 C 0.00 0.01 7.15 41.50 0.30 0.30 16 27 C -0.03 -0.36 5.51 29.94 0.17 -0.20 16 28 C 0.11 2.18 6.42 86.36 0.55 2.73 16 29 C -0.11 -2.38 5.36 30.67 0.16 -2.21 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.38 18.66 6.84 -92.71 -0.63 18.03 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.84 7.15 -2.39 -0.02 1.83 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.28 5.10 -2.39 -0.01 1.26 16 39 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 40 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.19 8.12 -2.39 -0.02 1.17 16 44 H 0.11 1.02 7.81 -2.39 -0.02 1.01 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.09 1.77 7.03 -2.39 -0.02 1.75 16 47 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.58 377.45 0.80 -71.78 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -1.61 Total: 22.84 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.86 Total: -3.97 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -4.43 Total: -122.65 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.05 Total: -14.77 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.58 0.80 -71.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206870068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.504 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds