Wall clock time and date at job start Tue Mar 31 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48493 * 109.47716 * 270.00188 * 3 2 1 5 5 H 1.48497 * 109.47226 * 30.00629 * 3 2 1 6 6 H 1.48509 * 109.46737 * 150.00278 * 3 2 1 7 7 C 1.37877 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99363 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99760 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47193 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99621 * 4.98672 * 12 11 10 14 14 N 1.34769 * 120.00214 * 184.98827 * 12 11 10 15 15 C 1.39600 * 120.00233 * 5.37712 * 14 12 11 16 16 N 1.32239 * 119.74168 * 94.88960 * 15 14 12 17 17 C 1.31978 * 121.71096 * 179.97438 * 16 15 14 18 18 C 1.38101 * 120.99098 * 0.02562 * 17 16 15 19 19 C 1.38749 * 119.37239 * 359.97438 * 18 17 16 20 20 C 1.38965 * 118.42835 * 359.97438 * 19 18 17 21 21 N 1.39908 * 120.51118 * 179.97438 * 20 19 18 22 22 C 1.46501 * 120.00042 * 185.37080 * 14 12 11 23 23 C 1.53112 * 109.52306 * 55.47500 * 22 14 12 24 24 C 1.53044 * 109.27601 * 182.50218 * 23 22 14 25 25 N 1.46846 * 109.57422 * 59.08503 * 24 23 22 26 26 C 1.46848 * 111.19715 * 298.28947 * 25 24 23 27 27 C 1.53037 * 109.52192 * 61.74321 * 26 25 24 28 28 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47671 * 59.99598 * 9 7 2 30 30 H 1.09003 * 109.46771 * 299.99979 * 9 7 2 31 31 H 1.00898 * 110.99918 * 56.04209 * 10 9 7 32 32 H 1.09001 * 109.47412 * 59.99420 * 11 10 9 33 33 H 1.09000 * 109.47263 * 299.99660 * 11 10 9 34 34 H 1.07999 * 119.50438 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.30855 * 180.02562 * 18 17 16 36 36 H 1.07998 * 120.78122 * 180.02562 * 19 18 17 37 37 H 0.97006 * 119.99766 * 355.00836 * 21 20 19 38 38 H 0.97001 * 119.99585 * 175.00301 * 21 20 19 39 39 H 1.09002 * 109.52114 * 175.60262 * 22 14 12 40 40 H 1.08998 * 109.50508 * 302.38499 * 23 22 14 41 41 H 1.09003 * 109.50325 * 62.49884 * 23 22 14 42 42 H 1.08992 * 109.41207 * 299.07070 * 24 23 22 43 43 H 1.09002 * 109.46096 * 179.13015 * 24 23 22 44 44 H 1.00906 * 110.99842 * 62.38788 * 25 24 23 45 45 H 1.08997 * 109.46350 * 301.72454 * 26 25 24 46 46 H 1.09003 * 109.45200 * 181.75117 * 26 25 24 47 47 H 1.09000 * 109.50012 * 180.88108 * 27 26 25 48 48 H 1.08999 * 109.53568 * 60.78275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5054 -4.9070 -0.0020 12 6 2.5149 -6.0259 -0.0023 13 8 3.6979 -5.7753 0.0891 14 7 2.1030 -7.3051 -0.1043 15 6 0.7536 -7.5887 -0.3222 16 7 0.3150 -7.7841 -1.5543 17 6 -0.9522 -8.0550 -1.8048 18 6 -1.8758 -8.1449 -0.7820 19 6 -1.4623 -7.9475 0.5276 20 6 -0.1221 -7.6648 0.7627 21 7 0.3420 -7.4575 2.0662 22 6 3.0714 -8.3981 0.0134 23 6 3.8282 -8.2707 1.3383 24 6 4.8809 -9.3780 1.4273 25 7 5.8114 -9.2642 0.2970 26 6 5.1136 -9.4315 -0.9842 27 6 4.0690 -8.3248 -1.1459 28 1 -0.4851 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8400 -3.5489 0.7804 32 1 0.8808 -4.9813 -0.8922 33 1 0.8801 -4.9816 0.8878 34 1 -1.2717 -8.2087 -2.8250 35 1 -2.9100 -8.3676 -0.9995 36 1 -2.1651 -8.0129 1.3450 37 1 -0.2842 -7.4387 2.8068 38 1 1.2900 -7.3326 2.2293 39 1 2.5477 -9.3535 -0.0166 40 1 4.3190 -7.2986 1.3850 41 1 3.1278 -8.3655 2.1681 42 1 4.3881 -10.3497 1.3956 43 1 5.4320 -9.2808 2.3627 44 1 6.3096 -8.3872 0.3257 45 1 4.6197 -10.4030 -1.0046 46 1 5.8339 -9.3731 -1.8002 47 1 3.5405 -8.4584 -2.0898 48 1 4.5633 -7.3534 -1.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218694797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:58 Heat of formation + Delta-G solvation = 17.972310 kcal Electronic energy + Delta-G solvation = -29808.423091 eV Core-core repulsion = 25898.186019 eV Total energy + Delta-G solvation = -3910.237072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24251 -39.62215 -38.08536 -35.61739 -35.14856 -34.80207 -32.43905 -31.83183 -31.00499 -30.64278 -28.71838 -27.82060 -25.16584 -23.94160 -23.25362 -23.06763 -22.90670 -21.48123 -20.91872 -19.47960 -17.85860 -17.71582 -17.11261 -16.87766 -16.28478 -15.55887 -15.42384 -15.27090 -15.00015 -14.79879 -14.53765 -14.36750 -14.06973 -13.96749 -13.74536 -13.41617 -13.24006 -13.01267 -12.93555 -12.41145 -12.38988 -12.24436 -12.09743 -11.65672 -11.47829 -11.30795 -11.21459 -10.94710 -10.84495 -10.75024 -10.67664 -10.00969 -9.92208 -9.77430 -9.45224 -9.14519 -8.86867 -8.57835 -8.49065 -7.90498 -7.35576 -6.04512 -4.06118 0.92828 1.25882 2.61611 2.79694 3.33220 3.38562 3.43383 3.47225 3.62661 4.17707 4.30857 4.44839 4.55041 4.61813 4.72091 4.79371 4.89804 4.95067 5.02393 5.17335 5.20404 5.28583 5.29463 5.31091 5.34363 5.42730 5.52590 5.67014 5.69068 5.76197 5.80548 5.86175 5.90075 5.98556 6.07413 6.18486 6.34521 6.56879 6.84425 6.97033 7.13473 7.20621 7.33456 7.36694 7.44586 7.76197 7.92894 8.07812 8.28959 8.34834 8.56445 9.03049 9.58774 11.06780 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010499 B = 0.003593 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.231489 B = 7790.254416 C = 9546.773786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.197 3.803 10 N -0.671 5.671 11 C 0.047 3.953 12 C 0.530 3.470 13 O -0.506 6.506 14 N -0.560 5.560 15 C 0.265 3.735 16 N -0.442 5.442 17 C 0.051 3.949 18 C -0.117 4.117 19 C -0.153 4.153 20 C 0.184 3.816 21 N -0.863 5.863 22 C 0.164 3.836 23 C -0.178 4.178 24 C 0.065 3.935 25 N -0.686 5.686 26 C 0.063 3.937 27 C -0.174 4.174 28 H 0.261 0.739 29 H 0.028 0.972 30 H -0.014 1.014 31 H 0.338 0.662 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.402 0.598 38 H 0.401 0.599 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.346 0.654 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -23.968 3.351 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.304 5.304 11 C -0.087 4.087 12 C 0.319 3.681 13 O -0.379 6.379 14 N -0.293 5.293 15 C 0.033 3.967 16 N -0.152 5.152 17 C -0.109 4.109 18 C -0.137 4.137 19 C -0.184 4.184 20 C 0.073 3.927 21 N -0.403 5.403 22 C 0.061 3.939 23 C -0.218 4.218 24 C -0.066 4.066 25 N -0.315 5.315 26 C -0.068 4.068 27 C -0.214 4.214 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.004 0.996 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.231 0.769 38 H 0.231 0.769 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.164 0.836 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.069 -24.273 2.042 24.358 hybrid contribution -1.350 1.757 1.716 2.803 sum -1.281 -22.515 3.758 22.863 Atomic orbital electron populations 1.69963 1.06093 1.26827 1.50970 1.24981 0.94895 0.99397 0.95252 0.86447 0.79693 0.82774 0.78213 1.20539 1.21299 1.19761 1.21161 0.93679 0.89972 1.50316 0.91746 1.19583 0.90447 0.87176 0.95749 1.60457 1.20511 0.99375 1.50020 1.21769 0.94598 0.90461 1.01824 1.21078 0.90272 0.82411 0.74307 1.90604 1.17559 1.82541 1.47204 1.45355 1.04595 1.06345 1.73003 1.17561 0.85094 1.06566 0.87492 1.67179 1.17849 1.08449 1.21689 1.22320 0.87330 1.01463 0.99815 1.21987 1.01121 0.97970 0.92636 1.21011 0.93486 1.05703 0.98172 1.18798 0.93325 0.94301 0.86286 1.42502 1.11477 1.81659 1.04618 1.21021 0.88892 0.88690 0.95267 1.22798 0.99702 1.02885 0.96420 1.21935 0.92580 0.97493 0.94570 1.60690 1.27690 1.40913 1.02183 1.21978 0.95249 0.97692 0.91860 1.22709 0.98180 1.02032 0.98448 0.92908 0.95374 0.99616 0.84446 0.89255 0.93639 0.82562 0.84426 0.84552 0.76909 0.76924 0.90326 0.88781 0.92013 0.91260 0.90433 0.83597 0.91280 0.90429 0.91034 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.20 5.32 5.44 -4.98 -0.03 5.29 16 10 N -0.67 -15.58 6.15 -116.34 -0.72 -16.30 16 11 C 0.05 0.89 5.02 -4.98 -0.02 0.87 16 12 C 0.53 9.08 7.00 -10.99 -0.08 9.00 16 13 O -0.51 -9.65 12.36 5.56 0.07 -9.58 16 14 N -0.56 -7.70 1.74 -107.95 -0.19 -7.89 16 15 C 0.27 3.53 4.78 -154.38 -0.74 2.79 16 16 N -0.44 -6.07 10.38 -12.17 -0.13 -6.19 16 17 C 0.05 0.55 11.17 -17.54 -0.20 0.35 16 18 C -0.12 -1.02 10.10 -39.44 -0.40 -1.42 16 19 C -0.15 -1.41 10.04 -39.12 -0.39 -1.80 16 20 C 0.18 2.02 6.58 -83.38 -0.55 1.48 16 21 N -0.86 -7.77 9.08 32.61 0.30 -7.47 16 22 C 0.16 1.94 2.58 -67.81 -0.18 1.77 16 23 C -0.18 -1.89 5.23 -26.65 -0.14 -2.03 16 24 C 0.06 0.59 6.55 -3.83 -0.03 0.57 16 25 N -0.69 -6.91 6.87 -113.81 -0.78 -7.69 16 26 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 27 C -0.17 -2.15 5.38 -26.65 -0.14 -2.29 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 31 H 0.34 7.74 8.35 -39.29 -0.33 7.41 16 32 H 0.09 1.82 7.87 -51.93 -0.41 1.41 16 33 H 0.05 0.83 8.01 -51.93 -0.42 0.42 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.40 2.65 8.86 -40.82 -0.36 2.28 16 38 H 0.40 3.88 6.95 -40.82 -0.28 3.60 16 39 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 40 H 0.09 1.25 5.97 -51.93 -0.31 0.94 16 41 H 0.06 0.58 7.05 -51.93 -0.37 0.21 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.35 3.61 8.86 -39.29 -0.35 3.26 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.09 1.36 6.26 -51.93 -0.33 1.03 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -33.32 385.33 -10.59 -43.91 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.33 Total: 13.24 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.33 Total: 1.43 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.78 Total: -71.88 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.32 -10.59 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218694797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.879 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds