Wall clock time and date at job start Tue Mar 31 2020 18:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48493 * 109.47716 * 270.00188 * 3 2 1 5 5 H 1.48497 * 109.47226 * 30.00629 * 3 2 1 6 6 H 1.48509 * 109.46737 * 150.00278 * 3 2 1 7 7 C 1.37877 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99363 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99760 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47193 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99621 * 4.98672 * 12 11 10 14 14 N 1.34769 * 120.00214 * 184.98827 * 12 11 10 15 15 C 1.39600 * 120.00233 * 5.37712 * 14 12 11 16 16 N 1.32239 * 119.74168 * 94.88960 * 15 14 12 17 17 C 1.31978 * 121.71096 * 179.97438 * 16 15 14 18 18 C 1.38101 * 120.99098 * 0.02562 * 17 16 15 19 19 C 1.38749 * 119.37239 * 359.97438 * 18 17 16 20 20 C 1.38965 * 118.42835 * 359.97438 * 19 18 17 21 21 N 1.39908 * 120.51118 * 179.97438 * 20 19 18 22 22 C 1.46501 * 120.00042 * 185.37080 * 14 12 11 23 23 C 1.53112 * 109.52306 * 55.47500 * 22 14 12 24 24 C 1.53044 * 109.27601 * 182.50218 * 23 22 14 25 25 N 1.46846 * 109.57422 * 59.08503 * 24 23 22 26 26 C 1.46848 * 111.19715 * 298.28947 * 25 24 23 27 27 C 1.53037 * 109.52192 * 61.74321 * 26 25 24 28 28 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47671 * 59.99598 * 9 7 2 30 30 H 1.09003 * 109.46771 * 299.99979 * 9 7 2 31 31 H 1.00898 * 110.99918 * 56.04209 * 10 9 7 32 32 H 1.09001 * 109.47412 * 59.99420 * 11 10 9 33 33 H 1.09000 * 109.47263 * 299.99660 * 11 10 9 34 34 H 1.07999 * 119.50438 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.30855 * 180.02562 * 18 17 16 36 36 H 1.07998 * 120.78122 * 180.02562 * 19 18 17 37 37 H 0.97006 * 119.99766 * 355.00836 * 21 20 19 38 38 H 0.97001 * 119.99585 * 175.00301 * 21 20 19 39 39 H 1.09002 * 109.52114 * 175.60262 * 22 14 12 40 40 H 1.08998 * 109.50508 * 302.38499 * 23 22 14 41 41 H 1.09003 * 109.50325 * 62.49884 * 23 22 14 42 42 H 1.08992 * 109.41207 * 299.07070 * 24 23 22 43 43 H 1.09002 * 109.46096 * 179.13015 * 24 23 22 44 44 H 1.00906 * 110.99842 * 62.38788 * 25 24 23 45 45 H 1.08997 * 109.46350 * 301.72454 * 26 25 24 46 46 H 1.09003 * 109.45200 * 181.75117 * 26 25 24 47 47 H 1.09000 * 109.50012 * 180.88108 * 27 26 25 48 48 H 1.08999 * 109.53568 * 60.78275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5054 -4.9070 -0.0020 12 6 2.5149 -6.0259 -0.0023 13 8 3.6979 -5.7753 0.0891 14 7 2.1030 -7.3051 -0.1043 15 6 0.7536 -7.5887 -0.3222 16 7 0.3150 -7.7841 -1.5543 17 6 -0.9522 -8.0550 -1.8048 18 6 -1.8758 -8.1449 -0.7820 19 6 -1.4623 -7.9475 0.5276 20 6 -0.1221 -7.6648 0.7627 21 7 0.3420 -7.4575 2.0662 22 6 3.0714 -8.3981 0.0134 23 6 3.8282 -8.2707 1.3383 24 6 4.8809 -9.3780 1.4273 25 7 5.8114 -9.2642 0.2970 26 6 5.1136 -9.4315 -0.9842 27 6 4.0690 -8.3248 -1.1459 28 1 -0.4851 0.8400 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5574 0.8880 31 1 2.8400 -3.5489 0.7804 32 1 0.8808 -4.9813 -0.8922 33 1 0.8801 -4.9816 0.8878 34 1 -1.2717 -8.2087 -2.8250 35 1 -2.9100 -8.3676 -0.9995 36 1 -2.1651 -8.0129 1.3450 37 1 -0.2842 -7.4387 2.8068 38 1 1.2900 -7.3326 2.2293 39 1 2.5477 -9.3535 -0.0166 40 1 4.3190 -7.2986 1.3850 41 1 3.1278 -8.3655 2.1681 42 1 4.3881 -10.3497 1.3956 43 1 5.4320 -9.2808 2.3627 44 1 6.3096 -8.3872 0.3257 45 1 4.6197 -10.4030 -1.0046 46 1 5.8339 -9.3731 -1.8002 47 1 3.5405 -8.4584 -2.0898 48 1 4.5633 -7.3534 -1.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218694797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:57 Heat of formation + Delta-G solvation = -8.114275 kcal Electronic energy + Delta-G solvation = -29809.554291 eV Core-core repulsion = 25898.186019 eV Total energy + Delta-G solvation = -3911.368271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27906 -40.58946 -39.17730 -36.92034 -36.52529 -35.89170 -34.54130 -32.71989 -31.87031 -31.64930 -29.99407 -29.26613 -26.93575 -24.80581 -24.43261 -24.04047 -23.77210 -23.34469 -21.93550 -20.59059 -19.17722 -18.62794 -18.27179 -17.97198 -17.82514 -17.03299 -16.61119 -16.40923 -16.19307 -15.93873 -15.69034 -15.33539 -15.26173 -15.09541 -14.91695 -14.84311 -14.42024 -14.28891 -14.15060 -13.80439 -13.43468 -13.34195 -13.22137 -13.11342 -12.95530 -12.73769 -12.66803 -12.34260 -12.13615 -12.11030 -11.89971 -11.80964 -11.45657 -10.89625 -10.71051 -10.68901 -10.43512 -9.91594 -9.43468 -9.28851 -8.71152 -8.27471 -6.38815 0.11069 0.46737 1.32121 1.39045 1.41288 1.52555 1.63805 2.37440 2.72521 2.80079 3.05834 3.15049 3.36665 3.53421 3.71166 3.71832 3.92120 3.94490 4.07423 4.10646 4.16916 4.19687 4.21997 4.23395 4.41365 4.43018 4.53166 4.60389 4.64599 4.88096 4.92306 4.92983 4.95738 4.99280 5.12261 5.15427 5.18015 5.25112 5.49366 5.53573 5.61679 5.90047 6.04390 6.09204 6.27720 6.36119 6.36955 6.55096 6.72446 6.78021 6.98678 7.10548 7.31804 8.84310 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010499 B = 0.003593 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.231489 B = 7790.254416 C = 9546.773786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.215 3.785 10 N -0.677 5.677 11 C 0.055 3.945 12 C 0.534 3.466 13 O -0.532 6.532 14 N -0.544 5.544 15 C 0.225 3.775 16 N -0.477 5.477 17 C 0.037 3.963 18 C -0.104 4.104 19 C -0.152 4.152 20 C 0.180 3.820 21 N -0.856 5.856 22 C 0.163 3.837 23 C -0.169 4.169 24 C 0.068 3.932 25 N -0.687 5.687 26 C 0.070 3.930 27 C -0.167 4.167 28 H 0.267 0.733 29 H 0.000 1.000 30 H -0.031 1.031 31 H 0.340 0.660 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.414 0.586 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.342 0.658 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -25.106 4.275 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.087 3.913 10 N -0.309 5.309 11 C -0.078 4.078 12 C 0.322 3.678 13 O -0.408 6.408 14 N -0.275 5.275 15 C -0.006 4.006 16 N -0.187 5.187 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.183 4.183 20 C 0.068 3.932 21 N -0.396 5.396 22 C 0.061 3.939 23 C -0.209 4.209 24 C -0.062 4.062 25 N -0.315 5.315 26 C -0.060 4.060 27 C -0.207 4.207 28 H 0.076 0.924 29 H 0.018 0.982 30 H -0.013 1.013 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.192 0.808 35 H 0.192 0.808 36 H 0.185 0.815 37 H 0.246 0.754 38 H 0.226 0.774 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.160 0.840 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.675 -25.463 2.992 25.647 hybrid contribution -1.266 2.013 1.387 2.753 sum -1.941 -23.450 4.379 23.934 Atomic orbital electron populations 1.70071 1.07656 1.28192 1.51061 1.25914 0.95848 1.03231 0.94250 0.85315 0.78515 0.77841 0.78528 1.19882 1.20104 1.18951 1.21463 0.93718 0.91321 1.51330 0.92139 1.19209 0.90287 0.88277 0.93492 1.60282 1.20155 1.00211 1.50252 1.21643 0.94995 0.89565 1.01593 1.20589 0.89207 0.83243 0.74728 1.90603 1.18101 1.83239 1.48818 1.45151 1.05650 1.05314 1.71372 1.17717 0.84898 1.09564 0.88381 1.67077 1.19658 1.09676 1.22315 1.22796 0.86807 1.01337 1.01500 1.22398 1.02423 0.95693 0.91885 1.21457 0.93059 1.04386 0.99429 1.18903 0.93849 0.94159 0.86273 1.42493 1.11599 1.81090 1.04457 1.21184 0.88575 0.88342 0.95770 1.22703 1.00041 1.02057 0.96058 1.21998 0.92089 0.97377 0.94726 1.60739 1.27775 1.40581 1.02408 1.21953 0.94665 0.97177 0.92218 1.22616 0.98623 1.01307 0.98138 0.92389 0.98165 1.01333 0.84236 0.90678 0.92509 0.80752 0.80788 0.81530 0.75432 0.77358 0.89146 0.91550 0.90602 0.89850 0.89213 0.84032 0.89898 0.89969 0.92378 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -32.19 9.32 25.60 0.24 -31.96 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 12.07 5.44 85.55 0.47 12.53 16 10 N -0.68 -32.71 6.15 -521.99 -3.21 -35.92 16 11 C 0.05 2.19 5.02 85.56 0.43 2.62 16 12 C 0.53 19.03 7.00 87.66 0.61 19.64 16 13 O -0.53 -21.27 12.36 -3.03 -0.04 -21.31 16 14 N -0.54 -15.30 1.74 -613.85 -1.07 -16.37 16 15 C 0.22 5.97 4.78 133.03 0.64 6.60 16 16 N -0.48 -13.15 10.38 -192.43 -2.00 -15.15 16 17 C 0.04 0.74 11.17 84.64 0.95 1.69 16 18 C -0.10 -1.55 10.10 22.36 0.23 -1.32 16 19 C -0.15 -2.42 10.04 22.57 0.23 -2.19 16 20 C 0.18 3.74 6.58 38.36 0.25 3.99 16 21 N -0.86 -14.32 9.08 -50.75 -0.46 -14.78 16 22 C 0.16 3.87 2.58 45.07 0.12 3.98 16 23 C -0.17 -3.50 5.23 30.65 0.16 -3.34 16 24 C 0.07 1.15 6.55 86.33 0.57 1.71 16 25 N -0.69 -13.24 6.87 -514.00 -3.53 -16.77 16 26 C 0.07 1.37 6.55 86.33 0.57 1.94 16 27 C -0.17 -4.25 5.38 30.65 0.16 -4.08 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 31 H 0.34 16.15 8.35 -89.70 -0.75 15.40 16 32 H 0.08 3.21 7.87 -2.39 -0.02 3.19 16 33 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16 34 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.41 4.67 8.86 -92.70 -0.82 3.85 16 38 H 0.40 7.37 6.95 -92.71 -0.64 6.73 16 39 H 0.09 1.96 7.91 -2.39 -0.02 1.95 16 40 H 0.07 1.81 5.97 -2.39 -0.01 1.80 16 41 H 0.08 1.34 7.05 -2.39 -0.02 1.32 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.34 7.13 8.86 -89.69 -0.79 6.34 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 1.84 6.26 -2.39 -0.01 1.83 16 Total: -1.00 -74.11 385.33 -3.92 -78.03 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -1.99 Total: 38.52 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.07 Total: 12.65 kcal Atomic # 7 Polarization: -145.23 SS G_CDS: -9.98 Total: -155.22 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.11 -3.92 -78.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218694797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.911 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds