Wall clock time and date at job start Tue Mar 31 2020 18:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48499 * 109.46898 * 269.99946 * 3 2 1 5 5 H 1.48493 * 109.47147 * 30.00143 * 3 2 1 6 6 H 1.48501 * 109.47301 * 150.00310 * 3 2 1 7 7 C 1.37879 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99659 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00138 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47310 * 180.02562 * 11 10 9 13 13 O 1.21296 * 119.99909 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00105 * 180.02562 * 12 11 10 15 15 C 1.40187 * 119.99949 * 185.26519 * 14 12 11 16 16 C 1.39418 * 120.40437 * 32.66514 * 15 14 12 17 17 C 1.38254 * 118.44576 * 179.97438 * 16 15 14 18 18 C 1.39115 * 119.17050 * 0.02562 * 17 16 15 19 19 N 1.39218 * 119.62942 * 179.97438 * 18 17 16 20 20 C 1.46842 * 110.99878 * 179.97438 * 19 18 17 21 21 C 1.53037 * 109.52479 * 185.83667 * 20 19 18 22 22 C 1.53118 * 109.27819 * 300.82670 * 21 20 19 23 23 N 1.46901 * 109.51920 * 177.55588 * 22 21 20 24 24 C 1.53120 * 109.16254 * 57.65297 * 22 21 20 25 25 C 1.46838 * 110.99905 * 304.21052 * 19 18 17 26 26 N 1.32346 * 120.74032 * 0.25298 * 18 17 16 27 27 C 1.31973 * 121.68718 * 359.47996 * 26 18 17 28 28 H 0.96996 * 119.99898 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47213 * 60.00402 * 9 7 2 30 30 H 1.08997 * 109.47419 * 299.99908 * 9 7 2 31 31 H 1.00899 * 110.99920 * 56.04301 * 10 9 7 32 32 H 1.09001 * 109.47064 * 59.99845 * 11 10 9 33 33 H 1.08998 * 109.46798 * 299.99834 * 11 10 9 34 34 H 0.96995 * 119.99769 * 5.26332 * 14 12 11 35 35 H 1.07997 * 120.77527 * 0.02562 * 16 15 14 36 36 H 1.08003 * 120.41431 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.45795 * 65.82490 * 20 19 18 38 38 H 1.08993 * 109.46568 * 305.85926 * 20 19 18 39 39 H 1.09009 * 109.49565 * 60.76674 * 21 20 19 40 40 H 1.08999 * 109.50571 * 180.88063 * 21 20 19 41 41 H 1.08991 * 109.52271 * 297.74328 * 22 21 20 42 42 H 1.00908 * 111.00076 * 179.97438 * 23 22 21 43 43 H 1.00904 * 111.00136 * 303.95102 * 23 22 21 44 44 H 1.08998 * 109.50100 * 182.40191 * 24 22 21 45 45 H 1.09004 * 109.50165 * 62.28263 * 24 22 21 46 46 H 1.08997 * 109.46618 * 294.17406 * 25 19 18 47 47 H 1.09005 * 109.46770 * 54.14778 * 25 19 18 48 48 H 1.08004 * 119.61602 * 180.29010 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5054 -4.9071 -0.0011 12 6 2.5149 -6.0260 -0.0005 13 8 3.7011 -5.7726 -0.0001 14 7 2.0998 -7.3082 -0.0014 15 6 3.0339 -8.3475 0.1106 16 6 4.1962 -8.1737 0.8607 17 6 5.0894 -9.2257 0.9443 18 6 4.8011 -10.4143 0.2813 19 7 5.6942 -11.4795 0.3586 20 6 5.2045 -12.6332 -0.4065 21 6 6.1340 -13.8279 -0.1815 22 6 7.5504 -13.4580 -0.6303 23 7 8.4591 -14.5808 -0.3625 24 6 8.0180 -12.2246 0.1473 25 6 7.0340 -11.0763 -0.0869 26 7 3.6901 -10.5418 -0.4265 27 6 2.8134 -9.5602 -0.5235 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8406 -3.5487 0.7808 32 1 0.8808 -4.9812 -0.8914 33 1 0.8803 -4.9817 0.8886 34 1 1.1546 -7.5118 -0.0796 35 1 4.3937 -7.2395 1.3653 36 1 5.9996 -9.1259 1.5171 37 1 5.1845 -12.3834 -1.4674 38 1 4.1981 -12.8884 -0.0747 39 1 6.1437 -14.0870 0.8773 40 1 5.7791 -14.6796 -0.7618 41 1 7.5482 -13.2366 -1.6975 42 1 9.4007 -14.3607 -0.6508 43 1 8.4310 -14.8445 0.6111 44 1 9.0092 -11.9309 -0.1983 45 1 8.0574 -12.4585 1.2112 46 1 7.0058 -10.8335 -1.1491 47 1 7.3562 -10.2009 0.4771 48 1 1.9153 -9.7023 -1.1064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218725649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:08 Heat of formation + Delta-G solvation = 16.061524 kcal Electronic energy + Delta-G solvation = -27419.756658 eV Core-core repulsion = 23509.436728 eV Total energy + Delta-G solvation = -3910.319930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19887 -39.97250 -38.67237 -35.95700 -35.02141 -34.45983 -32.62742 -32.38698 -31.22099 -30.92244 -28.91933 -27.58442 -25.08030 -24.66981 -23.82579 -22.83437 -22.19984 -21.44390 -20.53615 -20.17800 -18.21975 -17.68813 -17.13337 -16.62876 -16.25440 -16.01195 -15.68625 -15.53846 -15.15514 -14.74994 -14.59030 -14.57551 -14.34489 -14.07843 -13.71520 -13.56058 -13.37673 -13.26768 -13.07035 -12.67503 -12.63616 -12.34086 -11.80428 -11.67813 -11.58982 -11.44929 -11.36641 -11.02626 -10.90331 -10.80992 -10.72201 -10.12130 -10.00061 -9.97995 -9.60660 -9.35308 -9.19674 -9.15254 -8.53021 -7.90734 -7.43609 -6.08472 -4.10179 0.87897 1.13393 2.66468 2.88152 3.22613 3.31005 3.36632 3.41355 3.66706 3.98789 4.19314 4.30363 4.39275 4.40317 4.61148 4.70110 4.74179 4.75970 4.87999 4.96233 5.03966 5.12739 5.20914 5.21632 5.24445 5.28469 5.38017 5.42057 5.46264 5.54510 5.64971 5.68091 5.71456 5.77456 5.85025 5.91244 6.09909 6.42923 6.49892 6.62997 6.91072 6.95986 7.05010 7.25693 7.30794 7.71316 7.76336 8.02803 8.17444 8.26949 8.49541 8.98793 9.55036 11.02701 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.001679 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.536436 B =16672.643276 C =17376.023096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.674 5.674 11 C 0.044 3.956 12 C 0.513 3.487 13 O -0.504 6.504 14 N -0.677 5.677 15 C 0.085 3.915 16 C -0.058 4.058 17 C -0.162 4.162 18 C 0.286 3.714 19 N -0.474 5.474 20 C 0.068 3.932 21 C -0.112 4.112 22 C 0.086 3.914 23 N -0.845 5.845 24 C -0.151 4.151 25 C 0.061 3.939 26 N -0.500 5.500 27 C 0.097 3.903 28 H 0.262 0.738 29 H 0.031 0.969 30 H -0.011 1.011 31 H 0.339 0.661 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.412 0.588 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.341 0.659 43 H 0.341 0.659 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.084 0.916 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -29.213 1.555 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.306 5.306 11 C -0.089 4.089 12 C 0.301 3.699 13 O -0.377 6.377 14 N -0.324 5.324 15 C -0.013 4.013 16 C -0.086 4.086 17 C -0.185 4.185 18 C 0.054 3.946 19 N -0.193 5.193 20 C -0.059 4.059 21 C -0.150 4.150 22 C -0.025 4.025 23 N -0.373 5.373 24 C -0.190 4.190 25 C -0.066 4.066 26 N -0.213 5.213 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.007 0.993 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.248 0.752 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.678 -30.199 0.422 32.034 hybrid contribution 0.044 2.526 1.197 2.795 sum 10.722 -27.674 1.619 29.723 Atomic orbital electron populations 1.69951 1.06078 1.26913 1.50834 1.24977 0.94905 0.99422 0.95196 0.86442 0.79692 0.82759 0.78197 1.20559 1.21274 1.19789 1.21161 0.93712 0.89995 1.50514 0.91739 1.19624 0.90452 0.87101 0.95990 1.60450 1.20561 0.99355 1.50282 1.21790 0.94386 0.90214 1.02529 1.21354 0.90928 0.82937 0.74656 1.90694 1.17718 1.83250 1.46000 1.43652 1.09815 1.04802 1.74140 1.18714 0.93314 0.90035 0.99261 1.21529 0.92553 0.99372 0.95118 1.21457 1.01816 0.92314 1.02904 1.19713 0.91476 0.89936 0.93515 1.59237 1.01975 1.04548 1.53500 1.21948 0.99056 0.88548 0.96343 1.21681 0.93482 0.97563 1.02295 1.21567 0.93060 0.88359 0.99554 1.58910 1.12552 1.39602 1.26195 1.22496 0.98338 0.96215 1.01996 1.22189 0.86569 0.98396 0.99402 1.67516 1.04052 1.32074 1.17682 1.22301 0.98636 0.88224 0.97139 0.92851 0.95137 0.99291 0.84270 0.88364 0.92832 0.75185 0.83364 0.84508 0.93265 0.89267 0.91194 0.90318 0.90235 0.84638 0.84686 0.91022 0.90810 0.93536 0.89718 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.19 4.96 5.44 -4.97 -0.03 4.93 16 10 N -0.67 -14.44 6.11 -116.34 -0.71 -15.15 16 11 C 0.04 0.70 6.17 -4.98 -0.03 0.67 16 12 C 0.51 7.72 7.63 -10.99 -0.08 7.64 16 13 O -0.50 -9.41 13.89 5.54 0.08 -9.33 16 14 N -0.68 -7.54 5.36 -9.73 -0.05 -7.59 16 15 C 0.08 1.00 6.31 -83.46 -0.53 0.48 16 16 C -0.06 -0.73 8.76 -39.14 -0.34 -1.07 16 17 C -0.16 -1.81 9.18 -39.25 -0.36 -2.17 16 18 C 0.29 3.21 6.41 -154.86 -0.99 2.22 16 19 N -0.47 -4.42 4.68 -173.20 -0.81 -5.23 16 20 C 0.07 0.59 4.65 -3.84 -0.02 0.57 16 21 C -0.11 -0.76 5.64 -26.65 -0.15 -0.91 16 22 C 0.09 0.53 3.32 -67.59 -0.22 0.30 16 23 N -0.84 -4.47 9.26 -4.56 -0.04 -4.51 16 24 C -0.15 -0.87 5.67 -26.65 -0.15 -1.02 16 25 C 0.06 0.47 5.25 -3.84 -0.02 0.45 16 26 N -0.50 -5.80 8.68 -12.25 -0.11 -5.91 16 27 C 0.10 1.04 11.11 -17.35 -0.19 0.85 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.34 7.28 8.42 -39.29 -0.33 6.95 16 32 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.41 3.13 8.82 -40.82 -0.36 2.77 16 35 H 0.15 2.04 6.47 -52.49 -0.34 1.70 16 36 H 0.14 1.28 7.14 -52.48 -0.37 0.90 16 37 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 38 H 0.09 0.84 7.71 -51.93 -0.40 0.44 16 39 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.34 1.38 9.04 -39.29 -0.36 1.02 16 43 H 0.34 1.51 8.98 -39.29 -0.35 1.16 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.63 6.67 -51.93 -0.35 0.28 16 48 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -33.25 389.41 -11.08 -44.32 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.48 Total: 6.97 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -3.54 Total: -0.44 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.99 Total: -64.02 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.25 -11.08 -44.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218725649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.386 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds