Wall clock time and date at job start Tue Mar 31 2020 18:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48499 * 109.46898 * 269.99946 * 3 2 1 5 5 H 1.48493 * 109.47147 * 30.00143 * 3 2 1 6 6 H 1.48501 * 109.47301 * 150.00310 * 3 2 1 7 7 C 1.37879 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99659 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00138 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47310 * 180.02562 * 11 10 9 13 13 O 1.21296 * 119.99909 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00105 * 180.02562 * 12 11 10 15 15 C 1.40187 * 119.99949 * 185.26519 * 14 12 11 16 16 C 1.39418 * 120.40437 * 32.66514 * 15 14 12 17 17 C 1.38254 * 118.44576 * 179.97438 * 16 15 14 18 18 C 1.39115 * 119.17050 * 0.02562 * 17 16 15 19 19 N 1.39218 * 119.62942 * 179.97438 * 18 17 16 20 20 C 1.46842 * 110.99878 * 179.97438 * 19 18 17 21 21 C 1.53037 * 109.52479 * 185.83667 * 20 19 18 22 22 C 1.53118 * 109.27819 * 300.82670 * 21 20 19 23 23 N 1.46901 * 109.51920 * 177.55588 * 22 21 20 24 24 C 1.53120 * 109.16254 * 57.65297 * 22 21 20 25 25 C 1.46838 * 110.99905 * 304.21052 * 19 18 17 26 26 N 1.32346 * 120.74032 * 0.25298 * 18 17 16 27 27 C 1.31973 * 121.68718 * 359.47996 * 26 18 17 28 28 H 0.96996 * 119.99898 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47213 * 60.00402 * 9 7 2 30 30 H 1.08997 * 109.47419 * 299.99908 * 9 7 2 31 31 H 1.00899 * 110.99920 * 56.04301 * 10 9 7 32 32 H 1.09001 * 109.47064 * 59.99845 * 11 10 9 33 33 H 1.08998 * 109.46798 * 299.99834 * 11 10 9 34 34 H 0.96995 * 119.99769 * 5.26332 * 14 12 11 35 35 H 1.07997 * 120.77527 * 0.02562 * 16 15 14 36 36 H 1.08003 * 120.41431 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.45795 * 65.82490 * 20 19 18 38 38 H 1.08993 * 109.46568 * 305.85926 * 20 19 18 39 39 H 1.09009 * 109.49565 * 60.76674 * 21 20 19 40 40 H 1.08999 * 109.50571 * 180.88063 * 21 20 19 41 41 H 1.08991 * 109.52271 * 297.74328 * 22 21 20 42 42 H 1.00908 * 111.00076 * 179.97438 * 23 22 21 43 43 H 1.00904 * 111.00136 * 303.95102 * 23 22 21 44 44 H 1.08998 * 109.50100 * 182.40191 * 24 22 21 45 45 H 1.09004 * 109.50165 * 62.28263 * 24 22 21 46 46 H 1.08997 * 109.46618 * 294.17406 * 25 19 18 47 47 H 1.09005 * 109.46770 * 54.14778 * 25 19 18 48 48 H 1.08004 * 119.61602 * 180.29010 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5054 -4.9071 -0.0011 12 6 2.5149 -6.0260 -0.0005 13 8 3.7011 -5.7726 -0.0001 14 7 2.0998 -7.3082 -0.0014 15 6 3.0339 -8.3475 0.1106 16 6 4.1962 -8.1737 0.8607 17 6 5.0894 -9.2257 0.9443 18 6 4.8011 -10.4143 0.2813 19 7 5.6942 -11.4795 0.3586 20 6 5.2045 -12.6332 -0.4065 21 6 6.1340 -13.8279 -0.1815 22 6 7.5504 -13.4580 -0.6303 23 7 8.4591 -14.5808 -0.3625 24 6 8.0180 -12.2246 0.1473 25 6 7.0340 -11.0763 -0.0869 26 7 3.6901 -10.5418 -0.4265 27 6 2.8134 -9.5602 -0.5235 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8406 -3.5487 0.7808 32 1 0.8808 -4.9812 -0.8914 33 1 0.8803 -4.9817 0.8886 34 1 1.1546 -7.5118 -0.0796 35 1 4.3937 -7.2395 1.3653 36 1 5.9996 -9.1259 1.5171 37 1 5.1845 -12.3834 -1.4674 38 1 4.1981 -12.8884 -0.0747 39 1 6.1437 -14.0870 0.8773 40 1 5.7791 -14.6796 -0.7618 41 1 7.5482 -13.2366 -1.6975 42 1 9.4007 -14.3607 -0.6508 43 1 8.4310 -14.8445 0.6111 44 1 9.0092 -11.9309 -0.1983 45 1 8.0574 -12.4585 1.2112 46 1 7.0058 -10.8335 -1.1491 47 1 7.3562 -10.2009 0.4771 48 1 1.9153 -9.7023 -1.1064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218725649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:07 Heat of formation + Delta-G solvation = -10.196471 kcal Electronic energy + Delta-G solvation = -27420.895290 eV Core-core repulsion = 23509.436728 eV Total energy + Delta-G solvation = -3911.458562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08911 -40.95979 -39.50318 -37.01745 -36.47754 -35.37149 -34.48542 -33.42641 -31.88966 -31.64195 -30.17832 -28.89032 -26.67403 -25.45949 -24.67337 -23.57632 -23.53622 -22.81939 -21.53256 -20.88538 -19.27792 -18.70684 -18.32819 -18.05782 -17.41712 -16.90936 -16.59063 -16.55089 -16.31509 -15.98327 -15.63932 -15.40555 -15.21254 -15.06641 -14.87197 -14.80460 -14.36393 -14.29329 -14.10203 -14.02475 -13.50265 -13.31675 -13.22969 -13.10581 -12.70582 -12.62321 -12.38306 -12.26568 -12.09345 -12.06242 -11.89381 -11.50794 -11.44893 -11.12909 -10.85642 -10.66662 -10.50307 -10.23763 -9.59280 -9.17476 -8.77138 -8.23906 -6.33766 -0.02052 0.21975 1.41554 1.42694 1.50962 1.53989 1.84905 2.40072 2.44111 2.80058 3.10014 3.40091 3.53102 3.59247 3.67944 3.74708 3.83604 3.87286 3.97207 4.09743 4.12921 4.23904 4.31427 4.39179 4.43314 4.49010 4.57596 4.60373 4.71084 4.74405 4.81513 4.86305 5.00452 5.04138 5.06237 5.15303 5.19013 5.24464 5.32481 5.56497 5.59463 5.72498 5.97941 6.10039 6.24004 6.28747 6.39265 6.60958 6.64958 6.84127 6.89667 7.09274 7.36658 8.87229 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.001679 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.536436 B =16672.643276 C =17376.023096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.209 3.791 10 N -0.684 5.684 11 C 0.044 3.956 12 C 0.520 3.480 13 O -0.546 6.546 14 N -0.654 5.654 15 C 0.068 3.932 16 C -0.071 4.071 17 C -0.166 4.166 18 C 0.282 3.718 19 N -0.475 5.475 20 C 0.073 3.927 21 C -0.104 4.104 22 C 0.090 3.910 23 N -0.848 5.848 24 C -0.141 4.141 25 C 0.059 3.941 26 N -0.512 5.512 27 C 0.106 3.894 28 H 0.266 0.734 29 H 0.012 0.988 30 H -0.026 1.026 31 H 0.337 0.663 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.431 0.569 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.349 0.651 43 H 0.346 0.654 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.087 0.913 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.105 -30.349 1.499 32.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.082 3.918 10 N -0.316 5.316 11 C -0.089 4.089 12 C 0.309 3.691 13 O -0.421 6.421 14 N -0.302 5.302 15 C -0.030 4.030 16 C -0.099 4.099 17 C -0.188 4.188 18 C 0.050 3.950 19 N -0.193 5.193 20 C -0.055 4.055 21 C -0.143 4.143 22 C -0.022 4.022 23 N -0.378 5.378 24 C -0.181 4.181 25 C -0.068 4.068 26 N -0.226 5.226 27 C -0.054 4.054 28 H 0.075 0.925 29 H 0.030 0.970 30 H -0.009 1.009 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.270 0.730 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.106 0.894 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.328 -31.403 0.367 33.385 hybrid contribution -0.164 2.732 1.219 2.996 sum 11.165 -28.671 1.586 30.809 Atomic orbital electron populations 1.70050 1.07473 1.28045 1.51287 1.25844 0.95810 1.03018 0.94523 0.85383 0.78493 0.78301 0.78424 1.19948 1.20374 1.19229 1.21522 0.93712 0.91696 1.50955 0.92377 1.19268 0.90349 0.87950 0.94214 1.60262 1.20268 1.00650 1.50434 1.21852 0.94644 0.88111 1.04282 1.21044 0.89890 0.83833 0.74360 1.90688 1.19126 1.84000 1.48320 1.43292 1.10844 1.03382 1.72711 1.18803 0.93447 0.90509 1.00197 1.21525 0.93473 0.99186 0.95737 1.21571 1.02141 0.92018 1.03111 1.19983 0.91699 0.90321 0.93004 1.59280 1.02331 1.04209 1.53476 1.21907 0.99117 0.88881 0.95550 1.21607 0.93604 0.96694 1.02369 1.21466 0.92828 0.88759 0.99108 1.58881 1.13011 1.39110 1.26769 1.22446 0.98342 0.95200 1.02099 1.22279 0.86114 0.99466 0.98897 1.67612 1.04456 1.32408 1.18077 1.22721 0.99131 0.87256 0.96314 0.92504 0.97002 1.00857 0.84518 0.86844 0.90609 0.72952 0.84971 0.83141 0.94199 0.90210 0.91105 0.90111 0.90972 0.83706 0.84020 0.89602 0.90594 0.94331 0.89420 0.79595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -30.94 9.32 25.60 0.24 -30.70 16 8 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.21 10.87 5.44 85.56 0.47 11.33 16 10 N -0.68 -29.59 6.11 -521.99 -3.19 -32.78 16 11 C 0.04 1.36 6.17 85.56 0.53 1.89 16 12 C 0.52 15.38 7.63 87.66 0.67 16.05 16 13 O -0.55 -20.59 13.89 -3.08 -0.04 -20.63 16 14 N -0.65 -13.71 5.36 -303.08 -1.62 -15.33 16 15 C 0.07 1.55 6.31 38.18 0.24 1.79 16 16 C -0.07 -1.80 8.76 22.56 0.20 -1.60 16 17 C -0.17 -3.64 9.18 22.48 0.21 -3.44 16 18 C 0.28 6.13 6.41 133.00 0.85 6.99 16 19 N -0.47 -8.45 4.68 -701.87 -3.29 -11.73 16 20 C 0.07 1.19 4.65 86.33 0.40 1.59 16 21 C -0.10 -1.29 5.64 30.65 0.17 -1.12 16 22 C 0.09 0.97 3.32 44.99 0.15 1.12 16 23 N -0.85 -7.47 9.26 -168.35 -1.56 -9.02 16 24 C -0.14 -1.39 5.67 30.65 0.17 -1.22 16 25 C 0.06 0.85 5.25 86.33 0.45 1.31 16 26 N -0.51 -11.33 8.68 -192.68 -1.67 -13.00 16 27 C 0.11 2.09 11.11 84.76 0.94 3.03 16 28 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H -0.03 -1.41 8.14 -2.39 -0.02 -1.43 16 31 H 0.34 14.74 8.42 -89.69 -0.76 13.98 16 32 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.43 5.60 8.82 -92.71 -0.82 4.78 16 35 H 0.13 3.77 6.47 -2.91 -0.02 3.75 16 36 H 0.15 2.75 7.14 -2.91 -0.02 2.73 16 37 H 0.04 0.73 8.11 -2.38 -0.02 0.71 16 38 H 0.08 1.45 7.71 -2.39 -0.02 1.43 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.35 2.15 9.04 -89.69 -0.81 1.34 16 43 H 0.35 2.42 8.98 -89.69 -0.81 1.61 16 44 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.75 8.14 -2.38 -0.02 0.74 16 46 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.09 1.21 6.67 -2.38 -0.02 1.19 16 48 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -71.64 389.41 -5.09 -76.73 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -2.17 Total: 26.01 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.15 Total: 7.88 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -11.05 Total: -136.34 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -71.64 -5.09 -76.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218725649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.531 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds