Wall clock time and date at job start Tue Mar 31 2020 18:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48493 * 109.47241 * 84.65947 * 3 2 1 5 5 H 1.48508 * 109.47149 * 324.65679 * 3 2 1 6 6 H 1.48500 * 109.46943 * 204.65893 * 3 2 1 7 7 C 1.38810 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99979 * 325.42365 * 7 2 1 9 9 N 1.36933 * 120.00227 * 145.42708 * 7 2 1 10 10 C 1.46623 * 119.88850 * 331.43216 * 9 7 2 11 11 C 1.53902 * 107.38571 * 238.54920 * 10 9 7 12 12 C 1.53009 * 108.69794 * 299.55763 * 11 10 9 13 13 H 1.09010 * 113.83575 * 275.74651 * 12 11 10 14 14 C 1.54651 * 110.84267 * 145.04252 * 12 11 10 15 15 N 1.46629 * 85.48055 * 270.85109 * 14 12 11 16 16 C 1.34774 * 134.54854 * 153.44568 * 15 14 12 17 17 O 1.21282 * 119.99953 * 179.58915 * 16 15 14 18 18 C 1.50696 * 120.00061 * 359.59193 * 16 15 14 19 19 C 1.52997 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47155 * 179.97438 * 19 18 16 21 21 C 1.53003 * 109.46894 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.46629 * 180.02562 * 21 20 19 23 23 C 1.35345 * 126.91584 * 85.00197 * 22 21 20 24 24 N 1.33772 * 106.49888 * 179.97438 * 23 22 21 25 25 N 1.28636 * 108.88503 * 359.97438 * 24 23 22 26 26 N 1.28718 * 110.17713 * 359.75942 * 25 24 23 27 27 H 0.96998 * 125.86533 * 180.24149 * 26 25 24 28 28 C 1.46823 * 90.43478 * 333.15732 * 15 14 12 29 29 H 1.08998 * 111.56097 * 275.43959 * 28 15 14 30 30 C 1.45681 * 119.89392 * 151.70942 * 9 7 2 31 31 H 0.96995 * 120.00154 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.75432 * 356.96199 * 10 9 7 33 33 H 1.08998 * 109.74934 * 117.70132 * 10 9 7 34 34 H 1.09001 * 108.89940 * 180.35251 * 11 10 9 35 35 H 1.08992 * 110.79433 * 59.89032 * 11 10 9 36 36 H 1.09005 * 113.81918 * 24.44568 * 14 12 11 37 37 H 1.08992 * 113.82547 * 155.88771 * 14 12 11 38 38 H 1.09005 * 109.47044 * 300.00426 * 18 16 15 39 39 H 1.09001 * 109.47256 * 59.99710 * 18 16 15 40 40 H 1.08992 * 109.47354 * 299.99890 * 19 18 16 41 41 H 1.09007 * 109.47110 * 60.00140 * 19 18 16 42 42 H 1.09001 * 109.47101 * 300.00071 * 20 19 18 43 43 H 1.08993 * 109.46993 * 60.00239 * 20 19 18 44 44 H 1.09001 * 109.47229 * 299.99900 * 21 20 19 45 45 H 1.08993 * 109.47181 * 60.00261 * 21 20 19 46 46 H 1.08004 * 126.74966 * 359.97438 * 23 22 21 47 47 H 1.08994 * 108.71284 * 261.74718 * 30 9 7 48 48 H 1.09000 * 108.70949 * 19.88903 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3847 2.1116 1.3939 5 1 1.5085 2.6175 -0.8099 6 1 3.5996 1.4103 -0.5841 7 6 2.0103 -1.2021 -0.0005 8 1 1.6134 -2.0551 0.5299 9 7 3.1983 -1.3064 -0.6735 10 6 3.4481 -0.4671 -1.8495 11 6 3.7233 -1.4080 -3.0359 12 6 4.9542 -2.2576 -2.7129 13 1 5.9004 -1.7674 -2.9427 14 6 4.8109 -3.6802 -3.3023 15 7 4.1676 -4.0175 -2.0286 16 6 3.2612 -4.9367 -1.6414 17 8 2.9076 -4.9890 -0.4824 18 6 2.6871 -5.8996 -2.6485 19 6 1.6904 -6.8298 -1.9541 20 6 1.1071 -7.8070 -2.9767 21 6 0.1099 -8.7367 -2.2824 22 6 -0.4642 -9.6996 -3.2896 23 6 0.0745 -10.8752 -3.6891 24 7 -0.7692 -11.3935 -4.5885 25 7 -1.7646 -10.5922 -4.7358 26 7 -1.6252 -9.5658 -3.9717 27 1 -2.2446 -8.8229 -3.8993 28 6 4.9195 -2.9521 -1.3538 29 1 5.9100 -3.2913 -1.0505 30 6 4.2075 -2.2553 -0.2223 31 1 -0.4850 0.8400 -0.0004 32 1 2.5645 0.1325 -2.0685 33 1 4.3001 0.1862 -1.6615 34 1 3.9189 -0.8078 -3.9245 35 1 2.8694 -2.0602 -3.2187 36 1 4.1359 -3.7370 -4.1563 37 1 5.7624 -4.1821 -3.4774 38 1 2.1777 -5.3422 -3.4346 39 1 3.4918 -6.4909 -3.0854 40 1 2.2002 -7.3870 -1.1683 41 1 0.8856 -6.2387 -1.5168 42 1 0.5971 -7.2493 -3.7623 43 1 1.9115 -8.3980 -3.4143 44 1 0.6194 -9.2944 -1.4966 45 1 -0.6945 -8.1454 -1.8451 46 1 1.0029 -11.3095 -3.3486 47 1 4.9440 -1.7228 0.3793 48 1 3.7255 -3.0080 0.4017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221712898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:17 Heat of formation + Delta-G solvation = 113.484512 kcal Electronic energy + Delta-G solvation = -28671.761326 eV Core-core repulsion = 24765.665974 eV Total energy + Delta-G solvation = -3906.095352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.57522 -40.71985 -38.16037 -36.03265 -35.50267 -33.62800 -32.57745 -31.92240 -31.12301 -29.94909 -28.59132 -27.19953 -25.20431 -23.74332 -23.37900 -23.20265 -22.06589 -21.32351 -21.23877 -19.86059 -18.48049 -17.77591 -17.04309 -16.43645 -16.22270 -16.13077 -15.60915 -15.43398 -15.00784 -14.78187 -14.62320 -14.04170 -13.79408 -13.70687 -13.38541 -12.99120 -12.87539 -12.65828 -12.47258 -12.26708 -12.24274 -11.81960 -11.73116 -11.54364 -11.47287 -11.37659 -11.13229 -11.05683 -10.87754 -10.87214 -10.73696 -10.67118 -10.27726 -10.04149 -9.75613 -9.45016 -9.36520 -9.09901 -8.49066 -8.25439 -6.91986 -5.98589 -3.19779 1.25947 2.26341 2.45301 3.03547 3.08308 3.39882 3.52008 3.56334 4.08611 4.33639 4.53112 4.54825 4.59696 4.62361 4.66838 4.87905 4.95228 5.02109 5.09389 5.13856 5.21958 5.26627 5.28764 5.38503 5.41083 5.49401 5.54766 5.57148 5.62929 5.70250 5.71839 5.83749 5.84065 5.96529 6.00715 6.09617 6.22616 6.27806 6.32816 6.40310 6.52780 6.64363 6.75079 6.82947 7.00155 8.04088 8.10217 8.15539 8.40742 8.56876 9.04833 9.79499 10.16228 11.16636 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002465 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.356109 B =11355.053265 C =12356.292499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.035 3.965 3 Si 0.837 3.163 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.261 4.261 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.118 4.118 12 C -0.109 4.109 13 H 0.087 0.913 14 C 0.095 3.905 15 N -0.630 5.630 16 C 0.535 3.465 17 O -0.529 6.529 18 C -0.132 4.132 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.051 4.051 22 C -0.001 4.001 23 C -0.052 4.052 24 N -0.268 5.268 25 N -0.087 5.087 26 N -0.390 5.390 27 H 0.448 0.552 28 C 0.130 3.870 29 H 0.078 0.922 30 C 0.142 3.858 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.190 0.810 47 H 0.022 0.978 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 -14.332 -9.868 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.165 4.165 3 Si 0.665 3.335 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.389 4.389 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.157 4.157 12 C -0.128 4.128 13 H 0.105 0.895 14 C -0.029 4.029 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.405 6.405 18 C -0.172 4.172 19 C -0.142 4.142 20 C -0.152 4.152 21 C -0.091 4.091 22 C -0.135 4.135 23 C -0.209 4.209 24 N -0.135 5.135 25 N -0.067 5.067 26 N -0.111 5.111 27 H 0.294 0.706 28 C 0.026 3.974 29 H 0.096 0.904 30 C 0.016 3.984 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.207 0.793 47 H 0.039 0.961 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.928 -15.294 -10.228 19.330 hybrid contribution 0.761 2.043 0.803 2.324 sum 6.690 -13.251 -9.425 17.583 Atomic orbital electron populations 1.70086 1.06160 1.26575 1.50101 1.25219 0.94832 0.97329 0.99163 0.87576 0.82130 0.85993 0.77805 1.22243 1.22322 1.17993 1.18811 0.94280 0.96178 1.29631 0.90264 1.43787 1.16274 1.42815 1.28671 1.21433 0.99100 0.91940 0.85782 1.22058 0.95918 0.98635 0.99132 1.22953 0.99971 0.94605 0.95309 0.89510 1.23329 0.96844 0.94417 0.88292 1.49604 1.41211 1.33602 1.12221 1.20163 0.78580 0.79603 0.89193 1.90713 1.59710 1.70544 1.19574 1.21570 0.99861 0.97244 0.98523 1.21331 0.98855 0.96544 0.97486 1.21614 0.98211 0.96937 0.98413 1.20248 0.99237 0.95010 0.94605 1.22440 0.89458 1.00175 1.01403 1.23427 1.02787 0.94519 1.00128 1.75092 0.99971 1.22463 1.15969 1.78297 1.20020 0.94161 1.14212 1.45176 1.17871 1.19282 1.28762 0.70596 1.22370 0.93931 0.85446 0.95651 0.90405 1.20206 0.91852 0.93145 0.93234 0.92967 0.91544 0.94860 0.92612 0.91409 0.90521 0.90345 0.89385 0.89675 0.90891 0.90537 0.91836 0.91245 0.88378 0.89874 0.79287 0.96055 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.97 55.49 0.78 -26.38 16 2 C 0.03 1.00 4.84 -17.43 -0.08 0.92 16 3 Si 0.84 21.16 26.40 -169.99 -4.49 16.67 16 4 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 6 H -0.26 -6.00 4.86 56.52 0.27 -5.72 16 7 C -0.26 -7.42 9.80 -15.06 -0.15 -7.56 16 8 H 0.08 2.51 8.01 -52.48 -0.42 2.09 16 9 N -0.59 -14.03 2.70 -174.58 -0.47 -14.50 16 10 C 0.14 2.99 4.33 -3.51 -0.02 2.97 16 11 C -0.12 -1.92 5.70 -26.26 -0.15 -2.07 16 12 C -0.11 -1.45 4.36 -90.09 -0.39 -1.84 16 13 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 14 C 0.09 1.03 7.91 -3.65 -0.03 1.00 16 15 N -0.63 -9.46 3.24 -180.39 -0.58 -10.05 16 16 C 0.54 8.72 7.99 -10.99 -0.09 8.63 16 17 O -0.53 -10.99 15.10 5.56 0.08 -10.91 16 18 C -0.13 -1.48 5.44 -27.89 -0.15 -1.63 16 19 C -0.10 -1.07 4.50 -26.73 -0.12 -1.19 16 20 C -0.11 -0.82 5.20 -26.73 -0.14 -0.95 16 21 C -0.05 -0.32 5.78 -27.88 -0.16 -0.49 16 22 C 0.00 0.00 6.56 -82.09 -0.54 -0.54 16 23 C -0.05 -0.46 11.99 -17.74 -0.21 -0.68 16 24 N -0.27 -3.22 12.41 30.23 0.38 -2.84 16 25 N -0.09 -0.98 13.38 60.35 0.81 -0.18 16 26 N -0.39 -3.15 6.98 33.54 0.23 -2.91 16 27 H 0.45 2.16 8.96 -190.40 -1.71 0.46 16 28 C 0.13 2.04 4.28 -69.59 -0.30 1.74 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 C 0.14 2.91 6.18 -5.60 -0.03 2.88 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.53 5.47 -51.93 -0.28 1.25 16 33 H 0.03 0.68 6.77 -51.93 -0.35 0.33 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.22 7.67 -51.93 -0.40 0.83 16 36 H 0.08 0.75 7.97 -51.93 -0.41 0.34 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.19 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 1.84 6.31 -51.93 -0.33 1.51 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -36.68 381.39 -9.16 -45.85 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -9.08 Total: -1.68 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.56 Total: 1.19 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 1.14 Total: -56.86 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.49 Total: 16.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.68 -9.16 -45.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221712898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.330 kcal (2) G-P(sol) polarization free energy of solvation -36.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds