Wall clock time and date at job start Tue Mar 31 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99691 * 2 1 4 4 H 1.48493 * 109.47241 * 84.65947 * 3 2 1 5 5 H 1.48508 * 109.47149 * 324.65679 * 3 2 1 6 6 H 1.48500 * 109.46943 * 204.65893 * 3 2 1 7 7 C 1.38810 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99979 * 325.42365 * 7 2 1 9 9 N 1.36933 * 120.00227 * 145.42708 * 7 2 1 10 10 C 1.46623 * 119.88850 * 331.43216 * 9 7 2 11 11 C 1.53902 * 107.38571 * 238.54920 * 10 9 7 12 12 C 1.53009 * 108.69794 * 299.55763 * 11 10 9 13 13 H 1.09010 * 113.83575 * 275.74651 * 12 11 10 14 14 C 1.54651 * 110.84267 * 145.04252 * 12 11 10 15 15 N 1.46629 * 85.48055 * 270.85109 * 14 12 11 16 16 C 1.34774 * 134.54854 * 153.44568 * 15 14 12 17 17 O 1.21282 * 119.99953 * 179.58915 * 16 15 14 18 18 C 1.50696 * 120.00061 * 359.59193 * 16 15 14 19 19 C 1.52997 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47155 * 179.97438 * 19 18 16 21 21 C 1.53003 * 109.46894 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.46629 * 180.02562 * 21 20 19 23 23 C 1.35345 * 126.91584 * 85.00197 * 22 21 20 24 24 N 1.33772 * 106.49888 * 179.97438 * 23 22 21 25 25 N 1.28636 * 108.88503 * 359.97438 * 24 23 22 26 26 N 1.28718 * 110.17713 * 359.75942 * 25 24 23 27 27 H 0.96998 * 125.86533 * 180.24149 * 26 25 24 28 28 C 1.46823 * 90.43478 * 333.15732 * 15 14 12 29 29 H 1.08998 * 111.56097 * 275.43959 * 28 15 14 30 30 C 1.45681 * 119.89392 * 151.70942 * 9 7 2 31 31 H 0.96995 * 120.00154 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.75432 * 356.96199 * 10 9 7 33 33 H 1.08998 * 109.74934 * 117.70132 * 10 9 7 34 34 H 1.09001 * 108.89940 * 180.35251 * 11 10 9 35 35 H 1.08992 * 110.79433 * 59.89032 * 11 10 9 36 36 H 1.09005 * 113.81918 * 24.44568 * 14 12 11 37 37 H 1.08992 * 113.82547 * 155.88771 * 14 12 11 38 38 H 1.09005 * 109.47044 * 300.00426 * 18 16 15 39 39 H 1.09001 * 109.47256 * 59.99710 * 18 16 15 40 40 H 1.08992 * 109.47354 * 299.99890 * 19 18 16 41 41 H 1.09007 * 109.47110 * 60.00140 * 19 18 16 42 42 H 1.09001 * 109.47101 * 300.00071 * 20 19 18 43 43 H 1.08993 * 109.46993 * 60.00239 * 20 19 18 44 44 H 1.09001 * 109.47229 * 299.99900 * 21 20 19 45 45 H 1.08993 * 109.47181 * 60.00261 * 21 20 19 46 46 H 1.08004 * 126.74966 * 359.97438 * 23 22 21 47 47 H 1.08994 * 108.71284 * 261.74718 * 30 9 7 48 48 H 1.09000 * 108.70949 * 19.88903 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3847 2.1116 1.3939 5 1 1.5085 2.6175 -0.8099 6 1 3.5996 1.4103 -0.5841 7 6 2.0103 -1.2021 -0.0005 8 1 1.6134 -2.0551 0.5299 9 7 3.1983 -1.3064 -0.6735 10 6 3.4481 -0.4671 -1.8495 11 6 3.7233 -1.4080 -3.0359 12 6 4.9542 -2.2576 -2.7129 13 1 5.9004 -1.7674 -2.9427 14 6 4.8109 -3.6802 -3.3023 15 7 4.1676 -4.0175 -2.0286 16 6 3.2612 -4.9367 -1.6414 17 8 2.9076 -4.9890 -0.4824 18 6 2.6871 -5.8996 -2.6485 19 6 1.6904 -6.8298 -1.9541 20 6 1.1071 -7.8070 -2.9767 21 6 0.1099 -8.7367 -2.2824 22 6 -0.4642 -9.6996 -3.2896 23 6 0.0745 -10.8752 -3.6891 24 7 -0.7692 -11.3935 -4.5885 25 7 -1.7646 -10.5922 -4.7358 26 7 -1.6252 -9.5658 -3.9717 27 1 -2.2446 -8.8229 -3.8993 28 6 4.9195 -2.9521 -1.3538 29 1 5.9100 -3.2913 -1.0505 30 6 4.2075 -2.2553 -0.2223 31 1 -0.4850 0.8400 -0.0004 32 1 2.5645 0.1325 -2.0685 33 1 4.3001 0.1862 -1.6615 34 1 3.9189 -0.8078 -3.9245 35 1 2.8694 -2.0602 -3.2187 36 1 4.1359 -3.7370 -4.1563 37 1 5.7624 -4.1821 -3.4774 38 1 2.1777 -5.3422 -3.4346 39 1 3.4918 -6.4909 -3.0854 40 1 2.2002 -7.3870 -1.1683 41 1 0.8856 -6.2387 -1.5168 42 1 0.5971 -7.2493 -3.7623 43 1 1.9115 -8.3980 -3.4143 44 1 0.6194 -9.2944 -1.4966 45 1 -0.6945 -8.1454 -1.8451 46 1 1.0029 -11.3095 -3.3486 47 1 4.9440 -1.7228 0.3793 48 1 3.7255 -3.0080 0.4017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221712898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:16 Heat of formation + Delta-G solvation = 86.400107 kcal Electronic energy + Delta-G solvation = -28672.935794 eV Core-core repulsion = 24765.665974 eV Total energy + Delta-G solvation = -3907.269820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.27767 -41.89811 -39.40874 -37.23359 -36.77349 -34.36811 -33.96596 -33.34057 -32.62791 -31.09057 -29.64411 -28.62854 -26.09619 -25.45460 -24.63772 -23.96026 -22.84889 -22.74271 -22.03003 -21.04429 -19.29311 -19.13330 -18.58654 -17.69881 -17.19520 -17.06254 -17.03378 -16.70939 -16.39183 -15.61981 -15.44875 -15.41788 -15.21244 -14.92951 -14.64127 -14.38283 -14.17538 -13.99468 -13.66427 -13.55359 -13.22519 -13.07067 -12.89724 -12.70258 -12.64045 -12.52472 -12.27113 -12.15959 -12.13992 -12.08400 -11.82661 -11.60050 -11.56547 -11.46013 -11.27596 -11.22975 -10.59260 -10.41667 -10.10580 -9.49071 -8.87592 -8.22617 -5.40804 0.58192 1.34311 1.44446 1.52477 1.54598 1.84842 1.88039 2.02832 2.44194 2.94083 3.39277 3.44666 3.50920 3.62889 3.75904 3.91746 3.96092 4.00117 4.16074 4.17996 4.34091 4.38619 4.43783 4.47110 4.52005 4.56395 4.60335 4.66654 4.69401 4.73290 4.81160 4.87791 4.90011 4.96252 5.01330 5.06294 5.09718 5.13927 5.22080 5.28032 5.31580 5.34368 5.47595 5.60958 5.90569 5.97006 6.11814 6.96251 7.00183 7.37820 7.43174 7.70637 8.05182 8.97043 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002465 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.356109 B =11355.053265 C =12356.292499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.022 4.022 3 Si 0.916 3.084 4 H -0.305 1.305 5 H -0.294 1.294 6 H -0.222 1.222 7 C -0.256 4.256 8 H 0.019 0.981 9 N -0.604 5.604 10 C 0.134 3.866 11 C -0.111 4.111 12 C -0.102 4.102 13 H 0.130 0.870 14 C 0.110 3.890 15 N -0.640 5.640 16 C 0.517 3.483 17 O -0.594 6.594 18 C -0.122 4.122 19 C -0.099 4.099 20 C -0.101 4.101 21 C -0.047 4.047 22 C 0.011 3.989 23 C -0.057 4.057 24 N -0.303 5.303 25 N -0.118 5.118 26 N -0.380 5.380 27 H 0.460 0.540 28 C 0.117 3.883 29 H 0.112 0.888 30 C 0.141 3.859 31 H 0.262 0.738 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.216 0.784 47 H 0.030 0.970 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.136 -14.032 -12.765 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.218 4.218 3 Si 0.742 3.258 4 H -0.233 1.233 5 H -0.221 1.221 6 H -0.145 1.145 7 C -0.385 4.385 8 H 0.037 0.963 9 N -0.328 5.328 10 C 0.010 3.990 11 C -0.150 4.150 12 C -0.121 4.121 13 H 0.148 0.852 14 C -0.011 4.011 15 N -0.375 5.375 16 C 0.308 3.692 17 O -0.475 6.475 18 C -0.161 4.161 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.086 4.086 22 C -0.124 4.124 23 C -0.215 4.215 24 N -0.169 5.169 25 N -0.097 5.097 26 N -0.103 5.103 27 H 0.308 0.692 28 C 0.013 3.987 29 H 0.130 0.870 30 C 0.015 3.985 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.129 0.871 45 H 0.102 0.898 46 H 0.232 0.768 47 H 0.048 0.952 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.846 -14.985 -13.203 22.267 hybrid contribution -0.461 1.936 1.800 2.683 sum 9.386 -13.049 -11.402 19.708 Atomic orbital electron populations 1.70195 1.08072 1.27442 1.52826 1.25838 0.95422 1.00927 0.99649 0.86360 0.82057 0.80256 0.77126 1.23339 1.22106 1.14466 1.18533 0.96048 0.94435 1.29527 0.96280 1.43844 1.15395 1.43997 1.29569 1.21561 0.98369 0.92664 0.86411 1.21913 0.96699 0.98139 0.98237 1.22933 1.00127 0.95747 0.93307 0.85224 1.23574 0.98611 0.92261 0.86649 1.49864 1.40810 1.32630 1.14182 1.21172 0.78428 0.80249 0.89332 1.90690 1.61824 1.72460 1.22488 1.21605 1.00851 0.96553 0.97135 1.21249 0.97722 0.96612 0.98171 1.21495 0.98746 0.96333 0.97323 1.20260 0.99229 0.94745 0.94414 1.22599 0.88994 0.99951 1.00901 1.23950 1.03364 0.94738 0.99426 1.75052 1.00886 1.23510 1.17485 1.78245 1.20588 0.95224 1.15653 1.45235 1.18176 1.18976 1.27907 0.69184 1.22498 0.94553 0.86329 0.95331 0.87025 1.20240 0.91073 0.91857 0.95344 0.92963 0.94399 0.93061 0.88859 0.94052 0.88933 0.85955 0.88580 0.85980 0.91541 0.94060 0.91713 0.89367 0.87070 0.89758 0.76763 0.95250 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.63 13.97 21.65 0.30 -60.33 16 2 C -0.02 -1.32 4.84 84.86 0.41 -0.91 16 3 Si 0.92 44.97 26.40 68.60 1.81 46.78 16 4 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.22 -9.56 4.86 99.48 0.48 -9.07 16 7 C -0.26 -15.43 9.80 84.03 0.82 -14.60 16 8 H 0.02 1.36 8.01 -2.91 -0.02 1.33 16 9 N -0.60 -29.08 2.70 -706.24 -1.90 -30.99 16 10 C 0.13 5.36 4.33 86.66 0.38 5.73 16 11 C -0.11 -3.22 5.70 30.90 0.18 -3.04 16 12 C -0.10 -2.18 4.36 -10.28 -0.04 -2.23 16 13 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 14 C 0.11 1.78 7.91 86.56 0.68 2.47 16 15 N -0.64 -17.80 3.24 -843.01 -2.73 -20.53 16 16 C 0.52 16.86 7.99 87.66 0.70 17.56 16 17 O -0.59 -26.41 15.10 -3.04 -0.05 -26.45 16 18 C -0.12 -2.53 5.44 29.85 0.16 -2.37 16 19 C -0.10 -2.03 4.50 30.59 0.14 -1.89 16 20 C -0.10 -1.25 5.20 30.60 0.16 -1.09 16 21 C -0.05 -0.53 5.78 29.85 0.17 -0.35 16 22 C 0.01 0.15 6.56 41.35 0.27 0.42 16 23 C -0.06 -0.94 11.99 83.73 1.00 0.06 16 24 N -0.30 -7.14 12.41 -58.26 -0.72 -7.86 16 25 N -0.12 -2.65 13.38 37.02 0.50 -2.15 16 26 N -0.38 -5.87 6.98 -47.79 -0.33 -6.21 16 27 H 0.46 4.20 8.96 -219.96 -1.97 2.23 16 28 C 0.12 3.36 4.28 43.74 0.19 3.55 16 29 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 30 C 0.14 5.84 6.18 85.81 0.53 6.37 16 31 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 32 H 0.04 1.71 5.47 -2.39 -0.01 1.70 16 33 H 0.05 1.88 6.77 -2.39 -0.02 1.86 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.41 7.67 -2.39 -0.02 1.40 16 36 H 0.09 1.27 7.97 -2.38 -0.02 1.26 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.04 1.12 8.10 -2.38 -0.02 1.10 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.03 1.74 6.31 -2.39 -0.02 1.73 16 Total: -1.00 -90.15 381.39 1.40 -88.76 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -1.23 Total: 9.32 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.75 Total: 9.67 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -4.89 Total: -128.07 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.81 Total: 46.78 kcal Total: -90.15 1.40 -88.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221712898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.155 kcal (2) G-P(sol) polarization free energy of solvation -90.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds