Wall clock time and date at job start Tue Mar 31 2020 18:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48492 * 109.47631 * 270.00272 * 3 2 1 5 5 H 1.48506 * 109.47176 * 30.00529 * 3 2 1 6 6 H 1.48505 * 109.47032 * 150.00009 * 3 2 1 7 7 C 1.38813 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99632 * 163.07131 * 7 2 1 9 9 N 1.36943 * 119.99965 * 343.07696 * 7 2 1 10 10 C 1.46927 * 120.62601 * 331.84568 * 9 7 2 11 11 C 1.53192 * 108.76913 * 233.58783 * 10 9 7 12 12 C 1.53037 * 109.31512 * 305.36645 * 11 10 9 13 13 C 1.53004 * 109.46087 * 181.38883 * 12 11 10 14 14 N 1.46501 * 109.46932 * 174.97110 * 13 12 11 15 15 C 1.34780 * 119.99588 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00168 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99629 * 180.02562 * 15 14 13 18 18 N 1.46504 * 109.46591 * 180.02562 * 17 15 14 19 19 C 1.35315 * 125.86168 * 125.33005 * 18 17 15 20 20 C 1.35357 * 106.17016 * 180.11364 * 19 18 17 21 21 C 1.50700 * 126.75017 * 179.85107 * 20 19 18 22 22 C 1.52994 * 117.49748 * 84.71113 * 21 20 19 23 23 C 1.52997 * 60.03456 * 252.49521 * 22 21 20 24 24 N 1.33769 * 106.49474 * 359.58981 * 20 19 18 25 25 N 1.28634 * 108.89160 * 0.26282 * 24 20 19 26 26 C 1.53035 * 109.53001 * 61.37439 * 12 11 10 27 27 C 1.46922 * 120.62862 * 151.82679 * 9 7 2 28 28 H 0.96990 * 120.00189 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58594 * 113.80574 * 10 9 7 30 30 H 1.08997 * 109.70732 * 353.44398 * 10 9 7 31 31 H 1.09005 * 109.49423 * 185.41612 * 11 10 9 32 32 H 1.08993 * 109.50068 * 65.32221 * 11 10 9 33 33 H 1.09002 * 109.45804 * 301.35929 * 12 11 10 34 34 H 1.09001 * 109.46989 * 54.97297 * 13 12 11 35 35 H 1.09000 * 109.46822 * 294.97384 * 13 12 11 36 36 H 0.97000 * 120.00131 * 0.02562 * 14 13 12 37 37 H 1.09000 * 109.46845 * 59.99967 * 17 15 14 38 38 H 1.08994 * 109.46785 * 299.99919 * 17 15 14 39 39 H 1.07999 * 126.91629 * 359.96642 * 19 18 17 40 40 H 1.09006 * 115.55797 * 230.40460 * 21 20 19 41 41 H 1.08997 * 117.50300 * 0.02562 * 22 21 20 42 42 H 1.09006 * 117.49703 * 144.99679 * 22 21 20 43 43 H 1.09006 * 117.49585 * 107.49814 * 23 22 21 44 44 H 1.08994 * 117.50749 * 252.52151 * 23 22 21 45 45 H 1.08998 * 109.49587 * 58.57695 * 26 12 11 46 46 H 1.08996 * 109.50492 * 178.68039 * 26 12 11 47 47 H 1.09008 * 109.58291 * 246.19507 * 27 9 7 48 48 H 1.09001 * 109.58896 * 6.47901 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2222 -0.2729 9 7 1.3701 -2.3626 0.3442 10 6 0.2261 -2.3410 1.2658 11 6 0.4975 -3.3210 2.4115 12 6 0.8121 -4.7022 1.8323 13 6 1.0498 -5.6919 2.9747 14 7 1.2322 -7.0375 2.4249 15 6 1.4575 -8.0782 3.2512 16 8 1.5089 -7.9007 4.4498 17 6 1.6457 -9.4624 2.6856 18 7 1.8731 -10.4100 3.7795 19 6 1.1643 -11.5393 4.0103 20 6 1.7065 -12.1059 5.1136 21 6 1.2669 -13.3843 5.7794 22 6 1.8253 -14.6970 5.2264 23 6 0.3624 -14.3241 4.9782 24 7 2.7130 -11.3107 5.4932 25 7 2.7856 -10.3148 4.6824 26 6 2.0676 -4.6178 0.9614 27 6 1.8140 -3.6527 -0.2010 28 1 -0.4850 0.8399 -0.0004 29 1 -0.6770 -2.6412 0.7344 30 1 0.0967 -1.3360 1.6676 31 1 -0.3831 -3.3865 3.0506 32 1 1.3472 -2.9699 2.9970 33 1 -0.0280 -5.0418 1.2265 34 1 0.1901 -5.6866 3.6448 35 1 1.9431 -5.4010 3.5274 36 1 1.1915 -7.1794 1.4662 37 1 2.5053 -9.4672 2.0155 38 1 0.7525 -9.7535 2.1330 39 1 0.3318 -11.9122 3.4322 40 1 1.1006 -13.3214 6.8548 41 1 2.5110 -14.6359 4.3813 42 1 2.0268 -15.4977 5.9381 43 1 0.0853 -14.0176 3.9695 44 1 -0.3986 -14.8791 5.5268 45 1 2.9024 -4.2544 1.5607 46 1 2.3047 -5.6063 0.5680 47 1 1.0403 -4.0599 -0.8521 48 1 2.7334 -3.5124 -0.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223449404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:14 Heat of formation + Delta-G solvation = 108.685839 kcal Electronic energy + Delta-G solvation = -27716.847004 eV Core-core repulsion = 23810.543565 eV Total energy + Delta-G solvation = -3906.303438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.53531 -40.01126 -37.98273 -37.63603 -35.19732 -34.68038 -33.00648 -31.00056 -30.96603 -29.91649 -29.15188 -26.69409 -24.42031 -24.14828 -23.10975 -22.47967 -22.09160 -21.20541 -21.03034 -20.45196 -19.20905 -18.00190 -17.78427 -16.77879 -16.32191 -16.13808 -15.82618 -15.49479 -14.93995 -14.86814 -14.77453 -14.26803 -13.99376 -13.73552 -13.57034 -13.34212 -13.08031 -12.65343 -12.43338 -12.39832 -11.99585 -11.95050 -11.81389 -11.46759 -11.41127 -11.16280 -11.04402 -10.76152 -10.73454 -10.59248 -10.53915 -10.32200 -10.28247 -10.07902 -9.92339 -9.63372 -9.51398 -9.29505 -9.22972 -8.51007 -6.71672 -5.83389 -3.25839 1.28618 1.84079 2.21468 2.27601 2.88563 3.34715 3.37412 3.42256 3.44735 3.82740 4.11498 4.25035 4.40095 4.42568 4.45313 4.46331 4.52691 4.84259 4.97598 4.99525 5.11577 5.19575 5.27547 5.36263 5.40503 5.45473 5.52385 5.66195 5.74278 5.75955 5.80672 5.86101 5.93606 6.01993 6.16989 6.23496 6.24747 6.35507 6.52573 6.60537 6.67796 6.73547 6.90219 7.17202 7.31659 7.60418 7.75634 7.86293 8.32115 8.40999 9.17216 9.80609 10.36797 11.25231 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.043813 B = 0.001699 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.933087 B =16471.696018 C =16510.121022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.089 4.089 13 C 0.124 3.876 14 N -0.717 5.717 15 C 0.497 3.503 16 O -0.512 6.512 17 C 0.095 3.905 18 N -0.281 5.281 19 C -0.050 4.050 20 C 0.009 3.991 21 C -0.071 4.071 22 C -0.165 4.165 23 C -0.170 4.170 24 N -0.265 5.265 25 N -0.049 5.049 26 C -0.128 4.128 27 C 0.145 3.855 28 H 0.254 0.746 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.189 0.811 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 -27.163 3.898 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.108 4.108 13 C 0.002 3.998 14 N -0.370 5.370 15 C 0.280 3.720 16 O -0.386 6.386 17 C -0.030 4.030 18 N -0.074 5.074 19 C -0.199 4.199 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.203 4.203 23 C -0.208 4.208 24 N -0.132 5.132 25 N -0.029 5.029 26 C -0.167 4.167 27 C 0.019 3.981 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.206 0.794 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.484 -25.974 5.284 26.510 hybrid contribution -0.631 0.369 -1.103 1.323 sum -1.115 -25.605 4.182 25.968 Atomic orbital electron populations 1.70019 1.05278 1.25556 1.53897 1.25040 0.95282 0.98430 1.00826 0.86317 0.79216 0.83640 0.77719 1.21388 1.21528 1.20472 1.19170 0.92540 0.84832 1.41792 0.91765 1.44040 1.35895 1.01522 1.50013 1.20758 0.88597 0.98174 0.87870 1.22188 1.00440 0.94546 1.00155 1.21320 0.98822 0.95393 0.95294 1.21666 1.01856 0.79456 0.96871 1.45967 1.72690 1.08069 1.10282 1.20165 0.78320 0.85943 0.87589 1.90848 1.48584 1.84574 1.14553 1.21911 1.06701 0.87387 0.87037 1.46723 1.22459 1.16849 1.21370 1.23234 1.03225 0.90682 1.02791 1.20986 0.96943 0.98850 0.96005 1.20008 1.04683 0.85678 0.98754 1.22999 0.96459 0.97312 1.03482 1.23032 0.93918 1.02498 1.01336 1.75096 1.17661 1.00347 1.20062 1.78485 1.10200 1.17310 0.96883 1.22088 0.97010 0.98702 0.98900 1.20886 0.97554 0.87064 0.92633 0.93613 0.96445 0.89366 0.93036 0.92307 0.91227 0.91573 0.91240 0.76248 0.85158 0.84676 0.79384 0.86003 0.88684 0.88077 0.88608 0.87921 0.92067 0.93525 0.96642 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.06 1.70 7.88 -52.48 -0.41 1.28 16 9 N -0.59 -14.17 2.99 -172.32 -0.52 -14.68 16 10 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 11 C -0.13 -2.35 5.36 -26.61 -0.14 -2.49 16 12 C -0.09 -1.28 2.19 -90.58 -0.20 -1.47 16 13 C 0.12 1.58 5.06 -4.04 -0.02 1.56 16 14 N -0.72 -6.97 5.27 -60.29 -0.32 -7.29 16 15 C 0.50 5.48 7.84 -10.98 -0.09 5.39 16 16 O -0.51 -8.43 15.68 5.56 0.09 -8.34 16 17 C 0.10 0.64 6.94 -5.19 -0.04 0.60 16 18 N -0.28 -2.96 3.20 -62.44 -0.20 -3.16 16 19 C -0.05 -0.43 10.89 -17.04 -0.19 -0.62 16 20 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 21 C -0.07 -0.55 6.33 -91.74 -0.58 -1.13 16 22 C -0.16 -0.98 10.23 -26.74 -0.27 -1.26 16 23 C -0.17 -0.83 10.03 -26.69 -0.27 -1.10 16 24 N -0.26 -3.87 12.41 33.29 0.41 -3.46 16 25 N -0.05 -0.73 12.13 60.35 0.73 0.01 16 26 C -0.13 -1.92 5.25 -26.61 -0.14 -2.06 16 27 C 0.15 2.80 6.52 -3.71 -0.02 2.77 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 2.70 7.65 -40.82 -0.31 2.39 16 37 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.14 0.30 8.07 -51.93 -0.42 -0.12 16 39 H 0.19 0.80 7.45 -52.49 -0.39 0.41 16 40 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.37 7.23 -51.93 -0.38 -0.01 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.55 7.15 -51.93 -0.37 0.17 16 47 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 48 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -36.10 390.69 -8.74 -44.83 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.64 Total: -1.75 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.77 Total: -3.36 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.73 Total: -53.62 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.10 -8.74 -44.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223449404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.520 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds