Wall clock time and date at job start Tue Mar 31 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48492 * 109.47631 * 270.00272 * 3 2 1 5 5 H 1.48506 * 109.47176 * 30.00529 * 3 2 1 6 6 H 1.48505 * 109.47032 * 150.00009 * 3 2 1 7 7 C 1.38813 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99632 * 163.07131 * 7 2 1 9 9 N 1.36943 * 119.99965 * 343.07696 * 7 2 1 10 10 C 1.46927 * 120.62601 * 331.84568 * 9 7 2 11 11 C 1.53192 * 108.76913 * 233.58783 * 10 9 7 12 12 C 1.53037 * 109.31512 * 305.36645 * 11 10 9 13 13 C 1.53004 * 109.46087 * 181.38883 * 12 11 10 14 14 N 1.46501 * 109.46932 * 174.97110 * 13 12 11 15 15 C 1.34780 * 119.99588 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00168 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99629 * 180.02562 * 15 14 13 18 18 N 1.46504 * 109.46591 * 180.02562 * 17 15 14 19 19 C 1.35315 * 125.86168 * 125.33005 * 18 17 15 20 20 C 1.35357 * 106.17016 * 180.11364 * 19 18 17 21 21 C 1.50700 * 126.75017 * 179.85107 * 20 19 18 22 22 C 1.52994 * 117.49748 * 84.71113 * 21 20 19 23 23 C 1.52997 * 60.03456 * 252.49521 * 22 21 20 24 24 N 1.33769 * 106.49474 * 359.58981 * 20 19 18 25 25 N 1.28634 * 108.89160 * 0.26282 * 24 20 19 26 26 C 1.53035 * 109.53001 * 61.37439 * 12 11 10 27 27 C 1.46922 * 120.62862 * 151.82679 * 9 7 2 28 28 H 0.96990 * 120.00189 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58594 * 113.80574 * 10 9 7 30 30 H 1.08997 * 109.70732 * 353.44398 * 10 9 7 31 31 H 1.09005 * 109.49423 * 185.41612 * 11 10 9 32 32 H 1.08993 * 109.50068 * 65.32221 * 11 10 9 33 33 H 1.09002 * 109.45804 * 301.35929 * 12 11 10 34 34 H 1.09001 * 109.46989 * 54.97297 * 13 12 11 35 35 H 1.09000 * 109.46822 * 294.97384 * 13 12 11 36 36 H 0.97000 * 120.00131 * 0.02562 * 14 13 12 37 37 H 1.09000 * 109.46845 * 59.99967 * 17 15 14 38 38 H 1.08994 * 109.46785 * 299.99919 * 17 15 14 39 39 H 1.07999 * 126.91629 * 359.96642 * 19 18 17 40 40 H 1.09006 * 115.55797 * 230.40460 * 21 20 19 41 41 H 1.08997 * 117.50300 * 0.02562 * 22 21 20 42 42 H 1.09006 * 117.49703 * 144.99679 * 22 21 20 43 43 H 1.09006 * 117.49585 * 107.49814 * 23 22 21 44 44 H 1.08994 * 117.50749 * 252.52151 * 23 22 21 45 45 H 1.08998 * 109.49587 * 58.57695 * 26 12 11 46 46 H 1.08996 * 109.50492 * 178.68039 * 26 12 11 47 47 H 1.09008 * 109.58291 * 246.19507 * 27 9 7 48 48 H 1.09001 * 109.58896 * 6.47901 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2222 -0.2729 9 7 1.3701 -2.3626 0.3442 10 6 0.2261 -2.3410 1.2658 11 6 0.4975 -3.3210 2.4115 12 6 0.8121 -4.7022 1.8323 13 6 1.0498 -5.6919 2.9747 14 7 1.2322 -7.0375 2.4249 15 6 1.4575 -8.0782 3.2512 16 8 1.5089 -7.9007 4.4498 17 6 1.6457 -9.4624 2.6856 18 7 1.8731 -10.4100 3.7795 19 6 1.1643 -11.5393 4.0103 20 6 1.7065 -12.1059 5.1136 21 6 1.2669 -13.3843 5.7794 22 6 1.8253 -14.6970 5.2264 23 6 0.3624 -14.3241 4.9782 24 7 2.7130 -11.3107 5.4932 25 7 2.7856 -10.3148 4.6824 26 6 2.0676 -4.6178 0.9614 27 6 1.8140 -3.6527 -0.2010 28 1 -0.4850 0.8399 -0.0004 29 1 -0.6770 -2.6412 0.7344 30 1 0.0967 -1.3360 1.6676 31 1 -0.3831 -3.3865 3.0506 32 1 1.3472 -2.9699 2.9970 33 1 -0.0280 -5.0418 1.2265 34 1 0.1901 -5.6866 3.6448 35 1 1.9431 -5.4010 3.5274 36 1 1.1915 -7.1794 1.4662 37 1 2.5053 -9.4672 2.0155 38 1 0.7525 -9.7535 2.1330 39 1 0.3318 -11.9122 3.4322 40 1 1.1006 -13.3214 6.8548 41 1 2.5110 -14.6359 4.3813 42 1 2.0268 -15.4977 5.9381 43 1 0.0853 -14.0176 3.9695 44 1 -0.3986 -14.8791 5.5268 45 1 2.9024 -4.2544 1.5607 46 1 2.3047 -5.6063 0.5680 47 1 1.0403 -4.0599 -0.8521 48 1 2.7334 -3.5124 -0.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223449404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:13 Heat of formation + Delta-G solvation = 83.318125 kcal Electronic energy + Delta-G solvation = -27717.947030 eV Core-core repulsion = 23810.543565 eV Total energy + Delta-G solvation = -3907.403465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.28103 -40.93807 -39.37517 -38.14463 -36.49858 -35.44152 -34.54206 -32.61149 -31.69007 -31.44918 -30.08214 -28.09255 -25.75718 -25.03083 -23.97398 -23.64154 -22.98378 -22.46783 -21.82142 -21.24047 -20.65382 -18.88981 -18.59371 -18.40001 -17.09330 -16.93684 -16.70966 -16.65679 -16.24604 -15.71944 -15.54855 -15.38696 -15.30642 -15.15440 -14.80223 -14.71935 -14.05129 -13.94461 -13.81674 -13.42320 -13.17796 -12.99787 -12.82870 -12.56595 -12.54726 -12.28963 -12.27691 -12.10068 -12.03118 -11.85333 -11.82697 -11.63024 -11.42982 -11.21779 -11.14355 -11.10923 -10.80494 -10.53095 -10.17877 -9.97058 -8.65905 -7.87972 -5.32139 0.58115 1.26217 1.43166 1.44623 1.47184 1.49947 1.55936 2.11633 2.50698 2.90374 3.26817 3.27397 3.54628 3.71781 3.76123 3.83459 3.91508 3.94081 4.00573 4.04766 4.07552 4.09219 4.31178 4.42659 4.50906 4.54471 4.68880 4.72458 4.78694 4.80934 4.87272 4.93373 4.99845 5.02971 5.13306 5.21194 5.24094 5.27620 5.29470 5.32426 5.34022 5.44184 5.55418 5.56839 5.66254 5.79577 6.39977 6.43056 7.11395 7.16151 7.52713 7.89176 8.38642 9.17994 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.043813 B = 0.001699 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.933087 B =16471.696018 C =16510.121022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.962 3.038 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.178 3.822 11 C -0.125 4.125 12 C -0.075 4.075 13 C 0.138 3.862 14 N -0.702 5.702 15 C 0.496 3.504 16 O -0.573 6.573 17 C 0.095 3.905 18 N -0.280 5.280 19 C -0.031 4.031 20 C -0.010 4.010 21 C -0.098 4.098 22 C -0.167 4.167 23 C -0.144 4.144 24 N -0.313 5.313 25 N -0.104 5.104 26 C -0.115 4.115 27 C 0.139 3.861 28 H 0.249 0.751 29 H 0.002 0.998 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.422 0.578 37 H 0.162 0.838 38 H 0.192 0.808 39 H 0.239 0.761 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.045 0.955 46 H 0.092 0.908 47 H 0.023 0.977 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -30.091 2.200 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.790 3.210 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.052 3.948 11 C -0.164 4.164 12 C -0.094 4.094 13 C 0.014 3.986 14 N -0.356 5.356 15 C 0.281 3.719 16 O -0.452 6.452 17 C -0.029 4.029 18 N -0.073 5.073 19 C -0.181 4.181 20 C -0.148 4.148 21 C -0.118 4.118 22 C -0.204 4.204 23 C -0.181 4.181 24 N -0.179 5.179 25 N -0.083 5.083 26 C -0.154 4.154 27 C 0.014 3.986 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.260 0.740 37 H 0.179 0.821 38 H 0.209 0.791 39 H 0.255 0.745 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.041 0.959 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.214 -28.922 3.541 29.163 hybrid contribution -0.423 1.229 -0.623 1.441 sum -1.637 -27.693 2.918 27.894 Atomic orbital electron populations 1.70159 1.06527 1.25751 1.55517 1.25735 0.96014 1.01311 1.01460 0.85366 0.78063 0.79958 0.77606 1.20999 1.21967 1.19892 1.19486 0.92763 0.86298 1.40737 0.91891 1.44324 1.35966 1.02508 1.50836 1.20551 0.87929 0.97389 0.88949 1.21994 1.00687 0.95450 0.98292 1.21137 0.99027 0.93651 0.95622 1.21248 1.00824 0.80701 0.95824 1.45728 1.71971 1.06645 1.11240 1.20898 0.76632 0.87580 0.86766 1.90841 1.51269 1.85675 1.17382 1.22367 1.10661 0.83803 0.86029 1.47042 1.21558 1.17606 1.21117 1.23979 1.02966 0.89285 1.01892 1.21583 0.96512 0.99609 0.97092 1.20076 1.07561 0.85490 0.98709 1.23049 0.97658 0.96384 1.03347 1.23183 0.93254 0.99937 1.01707 1.75007 1.19911 1.01506 1.21440 1.78395 1.12756 1.18331 0.98787 1.21949 0.96650 0.99709 0.97089 1.21098 0.97361 0.85877 0.94304 0.94166 0.98026 0.93351 0.91399 0.93615 0.89666 0.92051 0.93149 0.73955 0.82099 0.79062 0.74478 0.86946 0.89262 0.87261 0.86782 0.86398 0.93636 0.88947 0.95926 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 11.19 21.65 0.24 -54.34 16 2 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 3 Si 0.96 44.75 29.59 68.60 2.03 46.78 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.61 -29.52 2.99 -699.08 -2.09 -31.61 16 10 C 0.18 8.20 5.30 86.36 0.46 8.66 16 11 C -0.12 -4.34 5.36 30.67 0.16 -4.18 16 12 C -0.08 -1.98 2.19 -10.77 -0.02 -2.01 16 13 C 0.14 3.24 5.06 86.38 0.44 3.67 16 14 N -0.70 -11.12 5.27 -463.04 -2.44 -13.56 16 15 C 0.50 9.58 7.84 87.66 0.69 10.27 16 16 O -0.57 -18.61 15.68 -3.01 -0.05 -18.65 16 17 C 0.09 0.84 6.94 85.63 0.59 1.44 16 18 N -0.28 -5.21 3.20 -351.45 -1.12 -6.33 16 19 C -0.03 -0.43 10.89 83.49 0.91 0.47 16 20 C -0.01 -0.20 6.88 41.60 0.29 0.09 16 21 C -0.10 -1.42 6.33 -11.52 -0.07 -1.50 16 22 C -0.17 -1.72 10.23 30.59 0.31 -1.41 16 23 C -0.14 -0.94 10.03 30.62 0.31 -0.63 16 24 N -0.31 -9.39 12.41 -48.60 -0.60 -9.99 16 25 N -0.10 -3.07 12.13 37.02 0.45 -2.62 16 26 C -0.12 -3.16 5.25 30.67 0.16 -2.99 16 27 C 0.14 5.14 6.52 86.36 0.56 5.71 16 28 H 0.25 14.16 8.31 -92.72 -0.77 13.39 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.05 2.60 6.07 -2.39 -0.01 2.59 16 31 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.42 3.42 7.65 -92.71 -0.71 2.71 16 37 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.19 -0.48 8.07 -2.39 -0.02 -0.50 16 39 H 0.24 0.60 7.45 -2.91 -0.02 0.58 16 40 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.11 0.89 8.14 -2.38 -0.02 0.88 16 43 H 0.11 0.33 7.23 -2.38 -0.02 0.31 16 44 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.72 7.15 -2.39 -0.02 1.70 16 47 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 Total: -1.00 -86.59 390.69 2.68 -83.91 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 0.26 Total: 4.61 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.01 Total: 1.80 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -5.57 Total: -118.45 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -86.59 2.68 -83.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223449404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.231 kcal (2) G-P(sol) polarization free energy of solvation -86.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds