Wall clock time and date at job start Tue Mar 31 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47306 * 299.99787 * 3 2 1 6 6 H 1.48495 * 109.47169 * 59.99969 * 3 2 1 7 7 C 1.38818 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.90816 * 23.74240 * 10 9 7 12 12 C 1.53784 * 113.61491 * 154.99680 * 10 9 7 13 13 C 1.53787 * 87.07923 * 139.97939 * 12 10 9 14 14 H 1.08998 * 113.61103 * 89.12089 * 13 12 10 15 15 C 1.53003 * 113.61385 * 220.01697 * 13 12 10 16 16 N 1.46498 * 109.47015 * 185.00396 * 15 13 12 17 17 C 1.34775 * 120.00104 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.50690 * 120.00341 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.47509 * 179.97438 * 19 17 16 21 21 N 1.29115 * 126.00648 * 90.01809 * 20 19 17 22 22 N 1.29027 * 110.25484 * 179.90477 * 21 20 19 23 23 C 1.32912 * 108.63660 * 359.97438 * 22 21 20 24 24 C 1.34399 * 126.00811 * 269.71657 * 20 19 17 25 25 C 1.50532 * 129.24829 * 0.25751 * 24 20 19 26 26 C 1.53438 * 108.32054 * 163.50192 * 25 24 20 27 27 C 1.53105 * 109.55066 * 49.71418 * 26 25 24 28 28 C 1.50595 * 129.16060 * 180.20025 * 23 22 21 29 29 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 30 30 H 0.97002 * 119.99808 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 32 32 H 1.09004 * 113.61451 * 25.43425 * 12 10 9 33 33 H 1.08994 * 113.61477 * 254.52726 * 12 10 9 34 34 H 1.08996 * 109.47095 * 305.00324 * 15 13 12 35 35 H 1.09005 * 109.46621 * 65.00138 * 15 13 12 36 36 H 0.97004 * 120.00129 * 359.97438 * 16 15 13 37 37 H 1.09005 * 109.46754 * 299.99551 * 19 17 16 38 38 H 1.09004 * 109.47660 * 59.99139 * 19 17 16 39 39 H 1.08999 * 109.69862 * 283.20582 * 25 24 20 40 40 H 1.08998 * 109.69623 * 43.79327 * 25 24 20 41 41 H 1.09000 * 109.45983 * 169.74495 * 26 25 24 42 42 H 1.09004 * 109.45719 * 289.71002 * 26 25 24 43 43 H 1.09002 * 109.45569 * 49.96104 * 27 26 25 44 44 H 1.09003 * 109.45260 * 169.91301 * 27 26 25 45 45 H 1.09010 * 109.69070 * 283.15030 * 28 23 22 46 46 H 1.08999 * 109.69061 * 43.72495 * 28 23 22 47 47 H 1.08999 * 113.61111 * 139.98327 * 29 13 12 48 48 H 1.09004 * 113.61682 * 270.87724 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2601 -4.8288 0.5961 13 6 1.8479 -5.6976 -0.5285 14 1 2.7984 -6.1635 -0.2688 15 6 0.8447 -6.6853 -1.1279 16 7 1.5259 -7.5433 -2.1005 17 6 0.8356 -8.4951 -2.7593 18 8 -0.3494 -8.6415 -2.5466 19 6 1.5363 -9.3780 -3.7594 20 7 0.5758 -10.3236 -4.3334 21 7 -0.1418 -10.1298 -5.3892 22 7 -0.8807 -11.1614 -5.6226 23 6 -0.6436 -12.0744 -4.6862 24 6 0.2909 -11.5476 -3.8570 25 6 0.8504 -12.2543 -2.6513 26 6 -0.0775 -13.4264 -2.3056 27 6 -0.3527 -14.2510 -3.5659 28 6 -1.2470 -13.4440 -4.5189 29 6 1.9990 -4.4022 -1.3432 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.1798 -4.7002 0.5292 33 1 1.5917 -5.1212 1.5924 34 1 0.4220 -7.3007 -0.3338 35 1 0.0460 -6.1349 -1.6253 36 1 2.4736 -7.4259 -2.2709 37 1 1.9597 -8.7628 -4.5533 38 1 2.3345 -9.9286 -3.2616 39 1 1.8486 -12.6300 -2.8761 40 1 0.8983 -11.5632 -1.8098 41 1 0.3989 -14.0576 -1.5554 42 1 -1.0180 -13.0410 -1.9116 43 1 0.5905 -14.4865 -4.0588 44 1 -0.8594 -15.1761 -3.2910 45 1 -2.2516 -13.3547 -4.1052 46 1 -1.2904 -13.9467 -5.4850 47 1 2.9270 -4.3502 -1.9125 48 1 1.1207 -4.1570 -1.9404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263844118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:21 Heat of formation + Delta-G solvation = 81.950026 kcal Electronic energy + Delta-G solvation = -27756.572631 eV Core-core repulsion = 23849.109841 eV Total energy + Delta-G solvation = -3907.462790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.64566 -40.11426 -38.60568 -37.43108 -35.18057 -34.88104 -33.39274 -31.12307 -30.47367 -30.36343 -29.20396 -26.98116 -25.18369 -24.51292 -23.95756 -23.00379 -22.25891 -21.21184 -20.76121 -19.94654 -19.19950 -17.99087 -17.68597 -17.09057 -16.31222 -16.07976 -15.92426 -15.32653 -14.92700 -14.80476 -14.42301 -14.30604 -14.18731 -14.05944 -13.92549 -13.62102 -13.55201 -13.05455 -12.81732 -12.56383 -12.01456 -11.91595 -11.79045 -11.57843 -11.50619 -11.44766 -11.39042 -11.31268 -10.90480 -10.79186 -10.71087 -10.56303 -10.31539 -10.15854 -9.94213 -9.90403 -9.57843 -9.30107 -9.05470 -8.92662 -7.01697 -5.82817 -3.12128 1.25251 1.86532 2.12038 2.36275 2.84841 3.39351 3.44679 3.47349 3.78994 4.02223 4.17184 4.25469 4.37642 4.39468 4.49163 4.53812 4.58950 4.83111 4.86241 4.93299 4.99365 5.08554 5.10828 5.16197 5.37262 5.40931 5.40976 5.44090 5.54216 5.67145 5.67639 5.71395 5.74662 5.83273 5.84542 6.01387 6.02021 6.03237 6.19314 6.24611 6.26434 6.31356 6.50274 6.72619 7.02617 7.08221 7.64868 7.76509 8.32035 8.35463 9.46678 10.04394 10.38267 11.39488 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.001756 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.937605 B =15942.351984 C =16289.475861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.133 3.867 16 N -0.716 5.716 17 C 0.496 3.504 18 O -0.519 6.519 19 C 0.094 3.906 20 N -0.269 5.269 21 N -0.083 5.083 22 N -0.259 5.259 23 C -0.021 4.021 24 C -0.009 4.009 25 C -0.046 4.046 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.033 4.033 29 C -0.162 4.162 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -30.772 -4.526 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.182 4.182 13 C -0.147 4.147 14 H 0.108 0.892 15 C 0.010 3.990 16 N -0.368 5.368 17 C 0.279 3.721 18 O -0.394 6.394 19 C -0.032 4.032 20 N -0.060 5.060 21 N -0.060 5.060 22 N -0.124 5.124 23 C -0.160 4.160 24 C -0.142 4.142 25 C -0.086 4.086 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.072 4.072 29 C -0.203 4.203 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.237 -29.637 -5.504 30.595 hybrid contribution 0.965 0.642 0.705 1.356 sum 6.201 -28.994 -4.799 30.036 Atomic orbital electron populations 1.69672 1.05159 1.25713 1.57335 1.24788 0.95534 0.97857 1.02737 0.86113 0.78757 0.84042 0.77229 1.20526 1.21821 1.21814 1.19341 0.91093 0.84216 1.43057 0.91017 1.42419 1.05782 0.99888 1.86947 1.21507 0.95327 0.85078 0.92688 0.90617 1.23462 1.01117 0.96995 0.96647 1.22653 0.98273 0.94348 0.99383 0.89240 1.21532 0.95471 0.91474 0.90538 1.45935 1.13381 1.34851 1.42622 1.20368 0.87908 0.81751 0.82091 1.90831 1.14826 1.69391 1.64365 1.21867 0.90126 0.92370 0.98826 1.46260 1.28910 1.11499 1.19334 1.78630 1.04898 1.19619 1.02888 1.74808 1.17194 0.97929 1.22485 1.21624 1.00220 0.99187 0.95011 1.21756 1.03327 0.87470 1.01662 1.20202 0.99288 0.96728 0.92346 1.21583 0.99990 0.95756 0.98014 1.21672 1.00195 0.98294 0.95517 1.19990 0.98628 0.87918 1.00659 1.23977 1.01440 0.94836 1.00069 0.93442 0.78048 0.90080 0.91911 0.91485 0.90899 0.76226 0.84377 0.84998 0.89718 0.90177 0.90449 0.90993 0.91368 0.90544 0.89863 0.89898 0.92688 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -17.38 5.40 -52.63 -0.28 -17.66 16 10 C 0.17 3.05 4.48 -67.12 -0.30 2.75 16 11 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 12 C -0.14 -2.11 7.39 -25.91 -0.19 -2.30 16 13 C -0.13 -1.50 3.75 -89.80 -0.34 -1.83 16 14 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.13 1.53 5.51 -4.04 -0.02 1.51 16 16 N -0.72 -6.30 5.56 -60.30 -0.33 -6.64 16 17 C 0.50 5.27 7.90 -10.99 -0.09 5.18 16 18 O -0.52 -8.30 16.43 5.55 0.09 -8.21 16 19 C 0.09 0.67 6.72 -5.20 -0.03 0.64 16 20 N -0.27 -3.04 2.82 -58.43 -0.16 -3.20 16 21 N -0.08 -1.22 13.19 60.35 0.80 -0.42 16 22 N -0.26 -3.86 12.40 33.16 0.41 -3.45 16 23 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 24 C -0.01 -0.09 6.76 -82.50 -0.56 -0.65 16 25 C -0.05 -0.29 5.94 -27.74 -0.16 -0.45 16 26 C -0.12 -0.60 5.90 -26.45 -0.16 -0.76 16 27 C -0.12 -0.60 5.91 -26.37 -0.16 -0.75 16 28 C -0.03 -0.25 6.31 -27.63 -0.17 -0.43 16 29 C -0.16 -2.48 7.43 -25.92 -0.19 -2.68 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.39 10.08 7.92 -40.82 -0.32 9.76 16 32 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 36 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 37 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.13 0.37 7.95 -51.93 -0.41 -0.04 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 43 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -37.13 394.51 -8.83 -45.96 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.78 Total: 5.74 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.21 Total: -7.91 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 1.15 Total: -58.59 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.13 -8.83 -45.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263844118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.914 kcal (2) G-P(sol) polarization free energy of solvation -37.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds