Wall clock time and date at job start Tue Mar 31 2020 17:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47306 * 299.99787 * 3 2 1 6 6 H 1.48495 * 109.47169 * 59.99969 * 3 2 1 7 7 C 1.38818 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.90816 * 23.74240 * 10 9 7 12 12 C 1.53784 * 113.61491 * 154.99680 * 10 9 7 13 13 C 1.53787 * 87.07923 * 139.97939 * 12 10 9 14 14 H 1.08998 * 113.61103 * 89.12089 * 13 12 10 15 15 C 1.53003 * 113.61385 * 220.01697 * 13 12 10 16 16 N 1.46498 * 109.47015 * 185.00396 * 15 13 12 17 17 C 1.34775 * 120.00104 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.50690 * 120.00341 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.47509 * 179.97438 * 19 17 16 21 21 N 1.29115 * 126.00648 * 90.01809 * 20 19 17 22 22 N 1.29027 * 110.25484 * 179.90477 * 21 20 19 23 23 C 1.32912 * 108.63660 * 359.97438 * 22 21 20 24 24 C 1.34399 * 126.00811 * 269.71657 * 20 19 17 25 25 C 1.50532 * 129.24829 * 0.25751 * 24 20 19 26 26 C 1.53438 * 108.32054 * 163.50192 * 25 24 20 27 27 C 1.53105 * 109.55066 * 49.71418 * 26 25 24 28 28 C 1.50595 * 129.16060 * 180.20025 * 23 22 21 29 29 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 30 30 H 0.97002 * 119.99808 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 32 32 H 1.09004 * 113.61451 * 25.43425 * 12 10 9 33 33 H 1.08994 * 113.61477 * 254.52726 * 12 10 9 34 34 H 1.08996 * 109.47095 * 305.00324 * 15 13 12 35 35 H 1.09005 * 109.46621 * 65.00138 * 15 13 12 36 36 H 0.97004 * 120.00129 * 359.97438 * 16 15 13 37 37 H 1.09005 * 109.46754 * 299.99551 * 19 17 16 38 38 H 1.09004 * 109.47660 * 59.99139 * 19 17 16 39 39 H 1.08999 * 109.69862 * 283.20582 * 25 24 20 40 40 H 1.08998 * 109.69623 * 43.79327 * 25 24 20 41 41 H 1.09000 * 109.45983 * 169.74495 * 26 25 24 42 42 H 1.09004 * 109.45719 * 289.71002 * 26 25 24 43 43 H 1.09002 * 109.45569 * 49.96104 * 27 26 25 44 44 H 1.09003 * 109.45260 * 169.91301 * 27 26 25 45 45 H 1.09010 * 109.69070 * 283.15030 * 28 23 22 46 46 H 1.08999 * 109.69061 * 43.72495 * 28 23 22 47 47 H 1.08999 * 113.61111 * 139.98327 * 29 13 12 48 48 H 1.09004 * 113.61682 * 270.87724 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2601 -4.8288 0.5961 13 6 1.8479 -5.6976 -0.5285 14 1 2.7984 -6.1635 -0.2688 15 6 0.8447 -6.6853 -1.1279 16 7 1.5259 -7.5433 -2.1005 17 6 0.8356 -8.4951 -2.7593 18 8 -0.3494 -8.6415 -2.5466 19 6 1.5363 -9.3780 -3.7594 20 7 0.5758 -10.3236 -4.3334 21 7 -0.1418 -10.1298 -5.3892 22 7 -0.8807 -11.1614 -5.6226 23 6 -0.6436 -12.0744 -4.6862 24 6 0.2909 -11.5476 -3.8570 25 6 0.8504 -12.2543 -2.6513 26 6 -0.0775 -13.4264 -2.3056 27 6 -0.3527 -14.2510 -3.5659 28 6 -1.2470 -13.4440 -4.5189 29 6 1.9990 -4.4022 -1.3432 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.1798 -4.7002 0.5292 33 1 1.5917 -5.1212 1.5924 34 1 0.4220 -7.3007 -0.3338 35 1 0.0460 -6.1349 -1.6253 36 1 2.4736 -7.4259 -2.2709 37 1 1.9597 -8.7628 -4.5533 38 1 2.3345 -9.9286 -3.2616 39 1 1.8486 -12.6300 -2.8761 40 1 0.8983 -11.5632 -1.8098 41 1 0.3989 -14.0576 -1.5554 42 1 -1.0180 -13.0410 -1.9116 43 1 0.5905 -14.4865 -4.0588 44 1 -0.8594 -15.1761 -3.2910 45 1 -2.2516 -13.3547 -4.1052 46 1 -1.2904 -13.9467 -5.4850 47 1 2.9270 -4.3502 -1.9125 48 1 1.1207 -4.1570 -1.9404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263844118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:20 Heat of formation + Delta-G solvation = 54.494538 kcal Electronic energy + Delta-G solvation = -27757.763190 eV Core-core repulsion = 23849.109841 eV Total energy + Delta-G solvation = -3908.653349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.45495 -41.04824 -39.84597 -37.95141 -36.22039 -35.83588 -35.10085 -32.30782 -31.57721 -31.11623 -30.13414 -28.07743 -26.46375 -25.80892 -25.09929 -23.62610 -23.21300 -22.38849 -21.62384 -20.59593 -20.44539 -19.13495 -18.72760 -18.42465 -17.12443 -17.07760 -16.79427 -16.50291 -16.08042 -15.92855 -15.46378 -15.16571 -14.98789 -14.87072 -14.76659 -14.65934 -14.58454 -14.30787 -13.61190 -13.39668 -13.24837 -13.07431 -13.04737 -12.94429 -12.68667 -12.56198 -12.24905 -12.18647 -12.07239 -11.98829 -11.81671 -11.67584 -11.57327 -11.43304 -11.33282 -11.11032 -10.85694 -10.75253 -10.22933 -9.83426 -8.98739 -7.95967 -5.24270 0.44967 1.20856 1.32267 1.46605 1.47268 1.49795 1.57279 2.07390 2.55703 3.17383 3.35764 3.44967 3.53147 3.71152 3.72776 3.73154 3.88212 3.91944 3.94656 4.01534 4.12152 4.25249 4.34271 4.40854 4.43189 4.53218 4.57139 4.58583 4.61307 4.72122 4.90897 4.96126 4.98233 5.01513 5.03888 5.08971 5.19515 5.19867 5.21837 5.28007 5.34426 5.39726 5.46402 5.51687 5.56794 5.73092 6.26534 6.35925 7.03448 7.31800 7.44404 8.10865 8.31542 9.27827 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.001756 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.937605 B =15942.351984 C =16289.475861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.732 5.732 10 C 0.141 3.859 11 H 0.084 0.916 12 C -0.139 4.139 13 C -0.090 4.090 14 H 0.132 0.868 15 C 0.139 3.861 16 N -0.697 5.697 17 C 0.497 3.503 18 O -0.581 6.581 19 C 0.091 3.909 20 N -0.269 5.269 21 N -0.130 5.130 22 N -0.302 5.302 23 C -0.044 4.044 24 C -0.002 4.002 25 C -0.046 4.046 26 C -0.116 4.116 27 C -0.111 4.111 28 C -0.036 4.036 29 C -0.156 4.156 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.424 0.576 37 H 0.161 0.839 38 H 0.187 0.813 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -33.354 -3.521 35.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.369 5.369 10 C 0.032 3.968 11 H 0.102 0.898 12 C -0.178 4.178 13 C -0.109 4.109 14 H 0.150 0.850 15 C 0.015 3.985 16 N -0.350 5.350 17 C 0.282 3.718 18 O -0.460 6.460 19 C -0.032 4.032 20 N -0.061 5.061 21 N -0.107 5.107 22 N -0.166 5.166 23 C -0.184 4.184 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.075 4.075 29 C -0.196 4.196 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.263 0.737 37 H 0.179 0.821 38 H 0.204 0.796 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.068 -32.247 -4.519 33.801 hybrid contribution -0.167 1.365 0.432 1.442 sum 8.901 -30.882 -4.086 32.398 Atomic orbital electron populations 1.69838 1.06796 1.25899 1.59923 1.25621 0.96360 1.01352 1.04080 0.85066 0.78447 0.79797 0.76430 1.18537 1.22469 1.22256 1.19794 0.91684 0.85332 1.40367 0.90034 1.42670 1.05339 1.01384 1.87490 1.21999 0.95738 0.83760 0.95307 0.89784 1.23342 0.99728 0.96058 0.98721 1.22479 0.99569 0.92701 0.96188 0.85032 1.21248 0.94845 0.91526 0.90872 1.45694 1.14240 1.33622 1.41482 1.20941 0.87189 0.81728 0.81955 1.90819 1.17627 1.71164 1.66387 1.22309 0.89757 0.92413 0.98752 1.46573 1.28629 1.12313 1.18559 1.78512 1.06705 1.20313 1.05194 1.74720 1.18343 0.99026 1.24525 1.22353 1.00971 1.00255 0.94855 1.22493 1.02225 0.86956 1.01986 1.20463 1.00845 0.96700 0.90445 1.21631 0.99315 0.95800 0.98623 1.21668 1.00148 0.98392 0.94716 1.20167 0.98961 0.86652 1.01714 1.23740 1.01073 0.96267 0.98540 0.94189 0.79813 0.91986 0.90051 0.91284 0.94189 0.73706 0.82117 0.79630 0.86413 0.89758 0.87645 0.92791 0.90440 0.88581 0.90348 0.89688 0.90925 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.97 45.90 29.55 68.60 2.03 47.92 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.07 9.97 84.04 0.84 -12.23 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.73 -36.16 5.40 -320.44 -1.73 -37.89 16 10 C 0.14 5.03 4.48 45.52 0.20 5.23 16 11 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 12 C -0.14 -3.92 7.39 31.12 0.23 -3.69 16 13 C -0.09 -1.85 3.75 -10.27 -0.04 -1.89 16 14 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 15 C 0.14 2.98 5.51 86.38 0.48 3.45 16 16 N -0.70 -10.24 5.56 -463.07 -2.57 -12.81 16 17 C 0.50 9.65 7.90 87.65 0.69 10.34 16 18 O -0.58 -18.68 16.43 -3.04 -0.05 -18.73 16 19 C 0.09 1.04 6.72 85.63 0.58 1.62 16 20 N -0.27 -5.80 2.82 -338.79 -0.95 -6.75 16 21 N -0.13 -3.95 13.19 37.02 0.49 -3.46 16 22 N -0.30 -9.43 12.40 -48.99 -0.61 -10.04 16 23 C -0.04 -1.02 7.11 41.75 0.30 -0.73 16 24 C 0.00 -0.04 6.76 41.50 0.28 0.24 16 25 C -0.05 -0.41 5.94 29.94 0.18 -0.23 16 26 C -0.12 -0.87 5.90 30.78 0.18 -0.69 16 27 C -0.11 -0.84 5.91 30.83 0.18 -0.66 16 28 C -0.04 -0.54 6.31 30.02 0.19 -0.35 16 29 C -0.16 -4.52 7.43 31.12 0.23 -4.28 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 20.15 7.92 -92.71 -0.73 19.42 16 32 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.15 7.84 -2.38 -0.02 1.13 16 36 H 0.42 2.66 8.47 -92.71 -0.79 1.87 16 37 H 0.16 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.19 0.04 7.95 -2.39 -0.02 0.02 16 39 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.05 0.61 8.11 -2.38 -0.02 0.59 16 43 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 44 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.05 1.77 7.90 -2.38 -0.02 1.75 16 Total: -1.00 -88.05 394.51 1.33 -86.72 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.54 Total: 23.20 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.98 Total: -8.12 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -5.09 Total: -130.99 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -88.05 1.33 -86.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263844118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.213 kcal (2) G-P(sol) polarization free energy of solvation -88.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds