Wall clock time and date at job start Tue Mar 31 2020 17:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86807 * 119.99757 * 2 1 4 4 H 1.48496 * 109.47019 * 269.99861 * 3 2 1 5 5 H 1.48494 * 109.47223 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47042 * 150.00043 * 3 2 1 7 7 C 1.38813 * 120.00556 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00394 * 197.01805 * 7 2 1 9 9 N 1.36934 * 119.99408 * 17.01756 * 7 2 1 10 10 C 1.47078 * 120.87897 * 206.58723 * 9 7 2 11 11 C 1.53249 * 108.52355 * 231.16418 * 10 9 7 12 12 N 1.46897 * 109.33481 * 306.17225 * 11 10 9 13 13 C 1.46904 * 110.99778 * 187.25018 * 12 11 10 14 14 C 1.53002 * 109.47015 * 169.99944 * 13 12 11 15 15 N 1.46504 * 109.46880 * 180.02562 * 14 13 12 16 16 C 1.34772 * 119.99809 * 179.97438 * 15 14 13 17 17 O 1.21601 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.47428 * 119.99854 * 179.97438 * 16 15 14 19 19 C 1.41709 * 126.50334 * 359.83139 * 18 16 15 20 20 N 1.30281 * 108.01326 * 179.97438 * 19 18 16 21 21 N 1.40515 * 109.01616 * 359.97438 * 20 19 18 22 22 C 1.34210 * 108.28375 * 0.22996 * 21 20 19 23 23 C 1.51385 * 110.37336 * 179.67929 * 22 21 20 24 24 C 1.54578 * 104.14574 * 343.53340 * 23 22 21 25 25 C 1.47263 * 140.81028 * 180.25418 * 21 20 19 26 26 C 1.46899 * 111.27397 * 63.10406 * 12 11 10 27 27 C 1.47077 * 120.88516 * 26.56502 * 9 7 2 28 28 H 0.96997 * 120.00653 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.63208 * 111.45424 * 10 9 7 30 30 H 1.09001 * 109.79147 * 350.96426 * 10 9 7 31 31 H 1.08994 * 109.49314 * 186.21326 * 11 10 9 32 32 H 1.09004 * 109.48948 * 66.12590 * 11 10 9 33 33 H 1.08997 * 109.47204 * 49.99887 * 13 12 11 34 34 H 1.09002 * 109.46967 * 290.00032 * 13 12 11 35 35 H 1.08996 * 109.47398 * 60.00433 * 14 13 12 36 36 H 1.08997 * 109.46892 * 299.99687 * 14 13 12 37 37 H 0.97005 * 119.99792 * 359.97438 * 15 14 13 38 38 H 1.07997 * 126.00124 * 0.02562 * 19 18 16 39 39 H 1.09004 * 110.49851 * 224.87426 * 23 22 21 40 40 H 1.09003 * 110.49822 * 102.19927 * 23 22 21 41 41 H 1.09003 * 110.98913 * 266.94560 * 24 23 22 42 42 H 1.09001 * 111.02224 * 143.13816 * 24 23 22 43 43 H 1.09003 * 110.22596 * 78.06007 * 25 21 20 44 44 H 1.08996 * 110.23097 * 316.18655 * 25 21 20 45 45 H 1.08996 * 109.49579 * 56.84916 * 26 12 11 46 46 H 1.08997 * 109.49764 * 176.93425 * 26 12 11 47 47 H 1.09002 * 109.62898 * 248.54845 * 27 9 7 48 48 H 1.08997 * 109.62605 * 9.12581 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3460 10 6 1.8309 -3.6608 0.1686 11 6 2.0024 -4.6201 -1.0141 12 7 0.7548 -4.6656 -1.7883 13 6 0.8184 -5.7007 -2.8287 14 6 -0.5692 -5.8905 -3.4448 15 7 -0.5059 -6.9233 -4.4819 16 6 -1.6175 -7.2613 -5.1649 17 8 -2.6729 -6.7089 -4.9207 18 6 -1.5537 -8.3002 -6.2091 19 6 -0.4032 -9.0253 -6.6076 20 7 -0.7539 -9.8488 -7.5542 21 7 -2.1277 -9.6968 -7.8076 22 6 -2.6048 -8.7483 -6.9868 23 6 -4.0850 -8.5400 -7.2262 24 6 -4.3425 -9.2018 -8.5992 25 6 -3.1958 -10.2331 -8.6680 26 6 0.4401 -3.3537 -2.3695 27 6 0.2046 -2.3426 -1.2423 28 1 -0.4851 0.8400 -0.0004 29 1 1.0921 -4.0627 0.8619 30 1 2.7850 -3.5375 0.6812 31 1 2.2364 -5.6176 -0.6424 32 1 2.8138 -4.2695 -1.6521 33 1 1.1514 -6.6399 -2.3870 34 1 1.5211 -5.3943 -3.6036 35 1 -0.9022 -4.9514 -3.8866 36 1 -1.2719 -6.1969 -2.6699 37 1 0.3361 -7.3637 -4.6771 38 1 0.5899 -8.9154 -6.1978 39 1 -4.3194 -7.4762 -7.2655 40 1 -4.6703 -9.0323 -6.4495 41 1 -4.2609 -8.4728 -9.4054 42 1 -5.3138 -9.6960 -8.6191 43 1 -3.5340 -11.1985 -8.2914 44 1 -2.8396 -10.3328 -9.6932 45 1 1.2731 -3.0208 -2.9886 46 1 -0.4589 -3.4328 -2.9808 47 1 -0.6906 -2.6178 -0.6847 48 1 0.0841 -1.3450 -1.6646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265259585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:05 Heat of formation + Delta-G solvation = 88.535043 kcal Electronic energy + Delta-G solvation = -27985.485720 eV Core-core repulsion = 24078.308477 eV Total energy + Delta-G solvation = -3907.177242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15295 -39.33833 -38.10750 -36.75030 -35.31322 -33.86989 -31.66615 -31.22314 -29.90383 -29.87834 -29.07938 -27.46892 -25.72437 -23.39509 -22.86999 -22.60276 -22.22176 -21.35096 -20.69965 -19.79826 -19.07086 -17.75401 -16.94231 -16.77073 -15.98850 -15.48140 -15.11077 -15.03337 -14.83406 -14.53285 -14.46369 -14.14742 -14.06806 -13.79727 -13.68714 -13.41427 -13.36858 -13.29182 -12.87718 -12.53800 -12.45223 -12.14406 -11.76789 -11.57764 -11.40303 -11.27117 -11.22717 -11.02071 -10.73219 -10.41704 -10.27496 -10.02027 -9.92060 -9.74755 -9.71678 -9.57842 -9.11470 -8.79639 -8.47747 -7.84375 -6.63727 -5.74572 -3.15982 1.22647 1.74867 1.86654 3.15586 3.37813 3.40167 3.46824 3.48207 3.52870 3.95552 4.11446 4.19040 4.45912 4.51625 4.55154 4.73370 4.86014 4.91977 4.94856 5.05265 5.16390 5.23326 5.35045 5.36829 5.42635 5.45955 5.53339 5.58349 5.87239 5.94686 6.02147 6.06999 6.14442 6.16393 6.25294 6.25691 6.36435 6.46962 6.57666 6.72681 6.95874 7.23741 7.27858 7.51437 7.60382 7.68123 7.73159 7.84758 8.28519 8.46835 9.24583 9.88029 10.46594 11.34149 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.001909 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.011011 B =14667.353627 C =15230.740987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.124 3.876 15 N -0.726 5.726 16 C 0.594 3.406 17 O -0.546 6.546 18 C -0.280 4.280 19 C 0.084 3.916 20 N -0.275 5.275 21 N -0.387 5.387 22 C 0.140 3.860 23 C -0.071 4.071 24 C -0.134 4.134 25 C 0.125 3.875 26 C 0.031 3.969 27 C 0.178 3.822 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.396 0.604 38 H 0.196 0.804 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.028 0.972 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -22.177 -17.894 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.084 4.084 14 C 0.001 3.999 15 N -0.377 5.377 16 C 0.381 3.619 17 O -0.424 6.424 18 C -0.294 4.294 19 C -0.104 4.104 20 N -0.093 5.093 21 N -0.166 5.166 22 C 0.006 3.994 23 C -0.110 4.110 24 C -0.172 4.172 25 C 0.005 3.995 26 C -0.098 4.098 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.213 0.787 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.563 -22.820 -18.335 30.000 hybrid contribution 1.447 1.384 -0.125 2.006 sum -5.116 -21.437 -18.460 28.749 Atomic orbital electron populations 1.70024 1.05177 1.25473 1.54018 1.25030 0.95315 0.98347 1.01098 0.86284 0.79065 0.83760 0.77627 1.21532 1.21761 1.20504 1.19197 0.92569 0.84797 1.41590 0.91638 1.44125 1.34150 1.01247 1.52366 1.20972 0.97816 0.86494 0.92551 1.22624 0.89316 0.99483 0.96893 1.61868 1.34592 1.05774 1.23207 1.22203 0.95147 0.96868 0.94216 1.21355 0.97962 0.90883 0.89748 1.45695 1.11276 1.41610 1.39154 1.17159 0.83580 0.81099 0.80079 1.90781 1.29391 1.54644 1.67547 1.19607 0.92823 1.09052 1.07968 1.24222 0.99115 0.92993 0.94033 1.77195 0.88078 1.24224 1.19809 1.50164 1.06398 1.29954 1.30112 1.22549 0.95534 0.90315 0.90983 1.21026 0.88218 1.04490 0.97244 1.22885 0.98278 0.98042 0.98009 1.22480 0.83734 0.98311 0.94960 1.23004 0.98866 0.89210 0.98733 1.20872 0.88980 0.96580 0.88411 0.93600 0.95612 0.92599 0.91976 0.95376 0.90872 0.94993 0.91075 0.90435 0.77066 0.78724 0.87470 0.87815 0.89136 0.87566 0.88862 0.88594 0.95622 0.91704 0.95431 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.15 55.49 0.62 -25.93 16 2 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.25 3.04 -172.01 -0.52 -15.77 16 10 C 0.15 3.17 6.69 -3.60 -0.02 3.14 16 11 C 0.05 0.82 5.62 -3.70 -0.02 0.80 16 12 N -0.53 -9.30 4.63 -234.31 -1.08 -10.38 16 13 C 0.04 0.60 5.08 -3.82 -0.02 0.58 16 14 C 0.12 1.69 5.61 -4.04 -0.02 1.67 16 15 N -0.73 -8.28 5.55 -61.38 -0.34 -8.62 16 16 C 0.59 7.97 7.81 -12.52 -0.10 7.87 16 17 O -0.55 -9.27 16.90 5.28 0.09 -9.18 16 18 C -0.28 -3.19 6.15 -104.84 -0.64 -3.83 16 19 C 0.08 0.81 11.52 -16.89 -0.19 0.62 16 20 N -0.28 -3.01 12.64 30.92 0.39 -2.62 16 21 N -0.39 -3.64 4.81 -55.08 -0.27 -3.90 16 22 C 0.14 1.42 7.31 -81.22 -0.59 0.83 16 23 C -0.07 -0.48 6.86 -26.72 -0.18 -0.66 16 24 C -0.13 -0.43 7.18 -25.18 -0.18 -0.61 16 25 C 0.13 0.60 7.77 -2.91 -0.02 0.58 16 26 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 27 C 0.18 4.36 5.42 -3.60 -0.02 4.34 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 31 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.86 7.97 -51.93 -0.41 0.44 16 34 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 35 H 0.07 1.10 6.40 -51.93 -0.33 0.76 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.40 3.25 7.44 -40.82 -0.30 2.95 16 38 H 0.20 1.13 7.52 -52.49 -0.39 0.74 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.11 0.08 8.14 -51.93 -0.42 -0.35 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 2.40 6.12 -51.93 -0.32 2.09 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -35.86 384.10 -10.16 -46.03 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.53 Total: -0.98 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -2.27 Total: 8.69 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.20 Total: -67.22 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.86 -10.16 -46.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265259585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.561 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds