Wall clock time and date at job start Tue Mar 31 2020 17:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86807 * 119.99757 * 2 1 4 4 H 1.48496 * 109.47019 * 269.99861 * 3 2 1 5 5 H 1.48494 * 109.47223 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47042 * 150.00043 * 3 2 1 7 7 C 1.38813 * 120.00556 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00394 * 197.01805 * 7 2 1 9 9 N 1.36934 * 119.99408 * 17.01756 * 7 2 1 10 10 C 1.47078 * 120.87897 * 206.58723 * 9 7 2 11 11 C 1.53249 * 108.52355 * 231.16418 * 10 9 7 12 12 N 1.46897 * 109.33481 * 306.17225 * 11 10 9 13 13 C 1.46904 * 110.99778 * 187.25018 * 12 11 10 14 14 C 1.53002 * 109.47015 * 169.99944 * 13 12 11 15 15 N 1.46504 * 109.46880 * 180.02562 * 14 13 12 16 16 C 1.34772 * 119.99809 * 179.97438 * 15 14 13 17 17 O 1.21601 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.47428 * 119.99854 * 179.97438 * 16 15 14 19 19 C 1.41709 * 126.50334 * 359.83139 * 18 16 15 20 20 N 1.30281 * 108.01326 * 179.97438 * 19 18 16 21 21 N 1.40515 * 109.01616 * 359.97438 * 20 19 18 22 22 C 1.34210 * 108.28375 * 0.22996 * 21 20 19 23 23 C 1.51385 * 110.37336 * 179.67929 * 22 21 20 24 24 C 1.54578 * 104.14574 * 343.53340 * 23 22 21 25 25 C 1.47263 * 140.81028 * 180.25418 * 21 20 19 26 26 C 1.46899 * 111.27397 * 63.10406 * 12 11 10 27 27 C 1.47077 * 120.88516 * 26.56502 * 9 7 2 28 28 H 0.96997 * 120.00653 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.63208 * 111.45424 * 10 9 7 30 30 H 1.09001 * 109.79147 * 350.96426 * 10 9 7 31 31 H 1.08994 * 109.49314 * 186.21326 * 11 10 9 32 32 H 1.09004 * 109.48948 * 66.12590 * 11 10 9 33 33 H 1.08997 * 109.47204 * 49.99887 * 13 12 11 34 34 H 1.09002 * 109.46967 * 290.00032 * 13 12 11 35 35 H 1.08996 * 109.47398 * 60.00433 * 14 13 12 36 36 H 1.08997 * 109.46892 * 299.99687 * 14 13 12 37 37 H 0.97005 * 119.99792 * 359.97438 * 15 14 13 38 38 H 1.07997 * 126.00124 * 0.02562 * 19 18 16 39 39 H 1.09004 * 110.49851 * 224.87426 * 23 22 21 40 40 H 1.09003 * 110.49822 * 102.19927 * 23 22 21 41 41 H 1.09003 * 110.98913 * 266.94560 * 24 23 22 42 42 H 1.09001 * 111.02224 * 143.13816 * 24 23 22 43 43 H 1.09003 * 110.22596 * 78.06007 * 25 21 20 44 44 H 1.08996 * 110.23097 * 316.18655 * 25 21 20 45 45 H 1.08996 * 109.49579 * 56.84916 * 26 12 11 46 46 H 1.08997 * 109.49764 * 176.93425 * 26 12 11 47 47 H 1.09002 * 109.62898 * 248.54845 * 27 9 7 48 48 H 1.08997 * 109.62605 * 9.12581 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3460 10 6 1.8309 -3.6608 0.1686 11 6 2.0024 -4.6201 -1.0141 12 7 0.7548 -4.6656 -1.7883 13 6 0.8184 -5.7007 -2.8287 14 6 -0.5692 -5.8905 -3.4448 15 7 -0.5059 -6.9233 -4.4819 16 6 -1.6175 -7.2613 -5.1649 17 8 -2.6729 -6.7089 -4.9207 18 6 -1.5537 -8.3002 -6.2091 19 6 -0.4032 -9.0253 -6.6076 20 7 -0.7539 -9.8488 -7.5542 21 7 -2.1277 -9.6968 -7.8076 22 6 -2.6048 -8.7483 -6.9868 23 6 -4.0850 -8.5400 -7.2262 24 6 -4.3425 -9.2018 -8.5992 25 6 -3.1958 -10.2331 -8.6680 26 6 0.4401 -3.3537 -2.3695 27 6 0.2046 -2.3426 -1.2423 28 1 -0.4851 0.8400 -0.0004 29 1 1.0921 -4.0627 0.8619 30 1 2.7850 -3.5375 0.6812 31 1 2.2364 -5.6176 -0.6424 32 1 2.8138 -4.2695 -1.6521 33 1 1.1514 -6.6399 -2.3870 34 1 1.5211 -5.3943 -3.6036 35 1 -0.9022 -4.9514 -3.8866 36 1 -1.2719 -6.1969 -2.6699 37 1 0.3361 -7.3637 -4.6771 38 1 0.5899 -8.9154 -6.1978 39 1 -4.3194 -7.4762 -7.2655 40 1 -4.6703 -9.0323 -6.4495 41 1 -4.2609 -8.4728 -9.4054 42 1 -5.3138 -9.6960 -8.6191 43 1 -3.5340 -11.1985 -8.2914 44 1 -2.8396 -10.3328 -9.6932 45 1 1.2731 -3.0208 -2.9886 46 1 -0.4589 -3.4328 -2.9808 47 1 -0.6906 -2.6178 -0.6847 48 1 0.0841 -1.3450 -1.6646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265259585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:04 Heat of formation + Delta-G solvation = 61.531733 kcal Electronic energy + Delta-G solvation = -27986.656671 eV Core-core repulsion = 24078.308477 eV Total energy + Delta-G solvation = -3908.348194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.82662 -40.42272 -39.60487 -37.29460 -36.79144 -35.34753 -33.30674 -32.16503 -31.63290 -30.46192 -30.32623 -28.40943 -27.24724 -25.01941 -24.27888 -23.55924 -23.04406 -22.51308 -21.45131 -20.85631 -20.58569 -18.76286 -18.50295 -17.47560 -17.27586 -16.75789 -16.54271 -16.00369 -15.90803 -15.75192 -15.48902 -15.32293 -15.19562 -14.96329 -14.92913 -14.74304 -14.53298 -14.26572 -14.11832 -13.93435 -13.19941 -13.04452 -12.99149 -12.78865 -12.61655 -12.54517 -12.51028 -12.21231 -12.12921 -12.03917 -12.00285 -11.83892 -11.54035 -11.39966 -10.96246 -10.58414 -10.37120 -10.15498 -9.62086 -9.27772 -8.67773 -7.86506 -5.31525 0.46107 1.10050 1.20695 1.46930 1.48255 1.57392 2.15571 2.43197 2.51482 3.04426 3.14368 3.28888 3.46404 3.64850 3.69557 3.86105 3.90156 3.98258 4.11983 4.12728 4.31385 4.35723 4.37337 4.47316 4.49967 4.52641 4.57600 4.66367 4.71409 4.74349 4.83836 4.88150 4.96757 4.97746 5.04442 5.06347 5.07814 5.22724 5.36336 5.38911 5.45186 5.62147 5.64896 5.69073 6.16376 6.25539 6.38194 6.51224 6.67046 7.13749 7.31470 7.84972 8.39285 9.20321 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.001909 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.011011 B =14667.353627 C =15230.740987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.542 5.542 13 C 0.054 3.946 14 C 0.133 3.867 15 N -0.711 5.711 16 C 0.592 3.408 17 O -0.591 6.591 18 C -0.310 4.310 19 C 0.093 3.907 20 N -0.305 5.305 21 N -0.388 5.388 22 C 0.129 3.871 23 C -0.077 4.077 24 C -0.117 4.117 25 C 0.113 3.887 26 C 0.050 3.950 27 C 0.185 3.815 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.227 0.773 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.023 0.977 46 H 0.075 0.925 47 H -0.004 1.004 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 -24.397 -19.435 31.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.016 3.984 11 C -0.071 4.071 12 N -0.268 5.268 13 C -0.074 4.074 14 C 0.009 3.991 15 N -0.363 5.363 16 C 0.381 3.619 17 O -0.472 6.472 18 C -0.325 4.325 19 C -0.095 4.095 20 N -0.123 5.123 21 N -0.167 5.167 22 C -0.006 4.006 23 C -0.115 4.115 24 C -0.155 4.155 25 C -0.005 4.005 26 C -0.080 4.080 27 C 0.059 3.941 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.251 0.749 38 H 0.243 0.757 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.157 0.843 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.041 0.959 46 H 0.093 0.907 47 H 0.014 0.986 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.264 -25.110 -19.902 32.471 hybrid contribution 1.015 1.978 0.365 2.253 sum -4.249 -23.132 -19.537 30.575 Atomic orbital electron populations 1.70195 1.06726 1.25836 1.55570 1.25837 0.96090 1.01636 1.01456 0.85227 0.78082 0.79392 0.77510 1.21259 1.22259 1.19137 1.19560 0.92944 0.85932 1.40774 0.91215 1.44413 1.34116 1.02323 1.53004 1.21167 0.97551 0.85474 0.94238 1.22475 0.89085 1.00279 0.95257 1.61750 1.35015 1.05218 1.24805 1.22192 0.94979 0.96568 0.93621 1.21092 0.97904 0.90482 0.89622 1.45467 1.11807 1.40867 1.38140 1.17494 0.83191 0.81004 0.80193 1.90751 1.31086 1.56387 1.69024 1.19616 0.94433 1.09792 1.08628 1.24698 0.99901 0.91696 0.93156 1.77113 0.89330 1.25173 1.20649 1.50582 1.06346 1.29594 1.30172 1.23127 0.96937 0.90037 0.90502 1.21186 0.86383 1.04303 0.99664 1.22931 0.99220 0.97578 0.95764 1.22931 0.83014 0.99394 0.95176 1.22613 0.99323 0.89474 0.96560 1.20605 0.87881 0.96329 0.89319 0.94124 0.96718 0.91843 0.88071 0.95311 0.87844 0.93471 0.93217 0.92207 0.74884 0.75659 0.88603 0.87172 0.88578 0.84348 0.87106 0.87232 0.95890 0.90659 0.98591 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 11.15 21.65 0.24 -56.89 16 2 C -0.06 -3.15 4.94 84.86 0.42 -2.73 16 3 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.26 -14.71 9.63 84.03 0.81 -13.90 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -31.93 3.04 -698.12 -2.12 -34.05 16 10 C 0.14 5.93 6.69 86.35 0.58 6.51 16 11 C 0.06 1.89 5.62 86.39 0.49 2.38 16 12 N -0.54 -18.16 4.63 -895.23 -4.14 -22.30 16 13 C 0.05 1.30 5.08 86.30 0.44 1.74 16 14 C 0.13 3.51 5.61 86.38 0.48 4.00 16 15 N -0.71 -15.23 5.55 -466.37 -2.59 -17.82 16 16 C 0.59 15.81 7.81 86.66 0.68 16.49 16 17 O -0.59 -20.69 16.90 -4.03 -0.07 -20.75 16 18 C -0.31 -6.88 6.15 -20.00 -0.12 -7.00 16 19 C 0.09 1.64 11.52 85.78 0.99 2.63 16 20 N -0.30 -6.24 12.64 -56.08 -0.71 -6.95 16 21 N -0.39 -6.74 4.81 -328.19 -1.58 -8.32 16 22 C 0.13 2.54 7.31 42.41 0.31 2.85 16 23 C -0.08 -0.97 6.86 30.60 0.21 -0.76 16 24 C -0.12 -0.47 7.18 31.60 0.23 -0.24 16 25 C 0.11 0.82 7.77 86.70 0.67 1.49 16 26 C 0.05 1.96 5.46 86.38 0.47 2.43 16 27 C 0.18 9.41 5.42 86.35 0.47 9.88 16 28 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 31 H 0.10 2.57 7.99 -2.39 -0.02 2.55 16 32 H 0.03 0.95 8.14 -2.38 -0.02 0.94 16 33 H 0.10 1.94 7.97 -2.39 -0.02 1.92 16 34 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.05 1.53 6.40 -2.39 -0.02 1.52 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.41 5.69 7.44 -92.70 -0.69 5.00 16 38 H 0.23 2.03 7.52 -2.91 -0.02 2.00 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.14 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.41 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 2.80 6.16 -2.39 -0.01 2.79 16 47 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 48 H 0.06 3.15 6.12 -2.39 -0.01 3.14 16 Total: -1.00 -81.49 384.10 -1.54 -83.03 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.28 Total: 10.56 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 7.12 Total: 25.77 kcal Atomic # 7 Polarization: -135.44 SS G_CDS: -10.90 Total: -146.33 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.07 Total: -20.75 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -81.49 -1.54 -83.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265259585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.563 kcal (2) G-P(sol) polarization free energy of solvation -81.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds