Wall clock time and date at job start Tue Mar 31 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 11 11 C 1.53187 * 108.77628 * 233.63550 * 10 9 7 12 12 C 1.53047 * 109.31470 * 305.36580 * 11 10 9 13 13 C 1.53349 * 109.60312 * 61.37322 * 12 11 10 14 14 H 1.08994 * 109.47524 * 58.55537 * 13 12 11 15 15 C 1.53003 * 109.68078 * 178.74970 * 13 12 11 16 16 N 1.46502 * 109.47260 * 184.75546 * 15 13 12 17 17 C 1.34770 * 120.00081 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00348 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.47351 * 180.02562 * 19 17 16 21 21 C 1.35307 * 125.87089 * 124.99356 * 20 19 17 22 22 C 1.35345 * 106.17299 * 179.97438 * 21 20 19 23 23 C 1.50706 * 126.74956 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49580 * 343.74624 * 23 22 21 25 25 C 1.52998 * 117.49607 * 275.08948 * 23 22 21 26 26 N 1.33770 * 106.50193 * 0.02562 * 22 21 20 27 27 N 1.28636 * 108.88209 * 359.73114 * 26 22 21 28 28 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 29 29 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58255 * 353.42549 * 10 9 7 31 31 H 1.09000 * 109.58150 * 113.70283 * 10 9 7 32 32 H 1.09000 * 109.49944 * 65.31598 * 11 10 9 33 33 H 1.09005 * 109.49966 * 185.41716 * 11 10 9 34 34 H 1.08995 * 109.45823 * 181.38501 * 12 11 10 35 35 H 1.08997 * 109.45689 * 301.36057 * 12 11 10 36 36 H 1.09003 * 109.47356 * 304.74990 * 15 13 12 37 37 H 1.08998 * 109.47102 * 64.75224 * 15 13 12 38 38 H 0.97004 * 119.99608 * 359.97438 * 16 15 13 39 39 H 1.09007 * 109.46924 * 299.99737 * 19 17 16 40 40 H 1.08998 * 109.47443 * 59.99626 * 19 17 16 41 41 H 1.07998 * 126.91067 * 0.02729 * 21 20 19 42 42 H 1.08997 * 115.55236 * 129.42179 * 23 22 21 43 43 H 1.08999 * 117.50166 * 0.02562 * 24 23 22 44 44 H 1.09004 * 117.49532 * 145.02183 * 24 23 22 45 45 H 1.09005 * 117.50103 * 214.98204 * 25 23 22 46 46 H 1.09009 * 117.50186 * 359.97374 * 25 23 22 47 47 H 1.09000 * 109.58339 * 246.15009 * 28 9 7 48 48 H 1.09003 * 109.58852 * 6.43598 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 0.2264 -2.3400 1.2683 11 6 0.4986 -3.3187 2.4150 12 6 0.8133 -4.7005 1.8372 13 6 2.0709 -4.6185 0.9634 14 1 2.9059 -4.2542 1.5616 15 6 2.4050 -6.0053 0.4099 16 7 3.6681 -5.9445 -0.3299 17 6 4.1634 -7.0555 -0.9100 18 8 3.5638 -8.1058 -0.8193 19 6 5.4630 -6.9931 -1.6705 20 7 5.7823 -8.3206 -2.2016 21 6 6.0319 -8.6169 -3.4980 22 6 6.2783 -9.9471 -3.5401 23 6 6.6111 -10.7643 -4.7618 24 6 6.3162 -10.1435 -6.1287 25 6 5.4438 -11.2858 -5.6023 26 7 6.1683 -10.3938 -2.2840 27 7 5.8789 -9.4046 -1.5142 28 6 1.8140 -3.6530 -0.1978 29 1 -0.4849 0.8400 0.0004 30 1 0.0994 -1.3342 1.6687 31 1 -0.6773 -2.6386 0.7370 32 1 1.3485 -2.9667 2.9997 33 1 -0.3817 -3.3837 3.0545 34 1 0.9833 -5.4045 2.6517 35 1 -0.0269 -5.0410 1.2321 36 1 2.5005 -6.7122 1.2341 37 1 1.6080 -6.3316 -0.2582 38 1 4.1475 -5.1043 -0.4027 39 1 5.3682 -6.2857 -2.4944 40 1 6.2599 -6.6675 -1.0020 41 1 6.0348 -7.9300 -4.3314 42 1 7.4932 -11.3989 -4.6770 43 1 5.8819 -9.1439 -6.1444 44 1 7.0042 -10.3700 -6.9433 45 1 5.5582 -12.2634 -6.0707 46 1 4.4351 -11.0382 -5.2713 47 1 1.0401 -4.0610 -0.8480 48 1 2.7331 -3.5130 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265584251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:48 Heat of formation + Delta-G solvation = 107.207900 kcal Electronic energy + Delta-G solvation = -28014.961034 eV Core-core repulsion = 24108.593508 eV Total energy + Delta-G solvation = -3906.367527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.46710 -39.92633 -37.94417 -37.56375 -35.07657 -34.59767 -33.12793 -30.92368 -30.79173 -30.51948 -28.88658 -25.54143 -25.27216 -24.34215 -23.05444 -22.36912 -22.04847 -21.14285 -20.94021 -20.37637 -19.17170 -17.87916 -17.73935 -16.74617 -16.43869 -15.76249 -15.70483 -15.57195 -14.92322 -14.85677 -14.79424 -14.44419 -13.94701 -13.72796 -13.52445 -13.17349 -12.88522 -12.67676 -12.43484 -12.27832 -12.24444 -11.90607 -11.73552 -11.42173 -11.39311 -11.10568 -11.05193 -10.82023 -10.59635 -10.58677 -10.57060 -10.30927 -10.26137 -10.04090 -9.93844 -9.65855 -9.51309 -9.22993 -9.16148 -8.55937 -6.77038 -5.88191 -3.31940 1.35632 1.92034 2.29445 2.33697 2.96850 3.29219 3.37181 3.38789 3.44231 3.92045 4.21738 4.34106 4.39599 4.49451 4.51617 4.53553 4.60797 4.89533 4.97387 5.06244 5.19543 5.28295 5.32906 5.35300 5.48077 5.52001 5.53936 5.72905 5.74512 5.81788 5.82135 5.88858 5.93001 6.12008 6.18423 6.25456 6.27654 6.31467 6.48828 6.60614 6.66514 6.76898 6.85073 7.26448 7.31718 7.59203 7.69248 7.93945 8.34995 8.38217 9.11073 9.74543 10.31345 11.19987 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002134 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.317408 B =13115.396746 C =14066.267572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.129 3.871 16 N -0.716 5.716 17 C 0.499 3.501 18 O -0.515 6.515 19 C 0.094 3.906 20 N -0.280 5.280 21 C -0.048 4.048 22 C 0.008 3.992 23 C -0.071 4.071 24 C -0.170 4.170 25 C -0.165 4.165 26 N -0.266 5.266 27 N -0.051 5.051 28 C 0.154 3.846 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.406 0.594 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.190 0.810 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.018 0.982 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.898 -14.437 -7.390 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.005 3.995 16 N -0.369 5.369 17 C 0.282 3.718 18 O -0.389 6.389 19 C -0.031 4.031 20 N -0.073 5.073 21 C -0.197 4.197 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.208 4.208 25 C -0.203 4.203 26 N -0.133 5.133 27 N -0.031 5.031 28 C 0.027 3.973 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.241 0.759 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.207 0.793 42 H 0.139 0.861 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.036 0.964 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.226 -15.632 -5.894 20.128 hybrid contribution 0.582 2.075 -1.012 2.381 sum 11.809 -13.557 -6.906 19.260 Atomic orbital electron populations 1.70042 1.05303 1.25503 1.53556 1.25065 0.95286 0.98481 1.00755 0.86243 0.79286 0.83967 0.77353 1.20277 1.21700 1.21508 1.19168 0.92443 0.84782 1.42096 0.91735 1.44036 1.35953 1.01278 1.50101 1.20803 0.88545 0.98348 0.88030 1.22166 1.00188 0.95875 0.99836 1.21393 0.96607 0.97836 0.97962 1.22021 0.99011 0.93363 0.99476 0.90726 1.21518 0.84186 0.98346 0.95406 1.45938 1.25445 1.11172 1.54303 1.20145 0.86363 0.84786 0.80542 1.90835 1.59678 1.29147 1.59265 1.21930 0.98668 0.80459 1.02069 1.46715 1.45266 1.09061 1.06255 1.23252 1.09921 0.98449 0.88115 1.20980 1.06569 0.91358 0.94014 1.19986 1.00872 1.01768 0.86498 1.23034 1.03480 0.98512 0.95760 1.23023 0.95991 0.98755 1.02534 1.75078 1.16086 1.21292 1.00806 1.78454 1.16477 0.87610 1.20556 1.20891 0.97409 0.86943 0.92060 0.93593 0.89560 0.96391 0.92704 0.93095 0.93359 0.92449 0.91618 0.91373 0.75921 0.84481 0.85126 0.79341 0.86079 0.88554 0.87939 0.88067 0.88581 0.96388 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 11.20 55.49 0.62 -24.60 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 20.67 29.59 -169.99 -5.03 15.64 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.26 -6.55 9.58 -15.06 -0.14 -6.69 16 8 H 0.06 1.60 7.89 -52.48 -0.41 1.18 16 9 N -0.59 -13.76 2.99 -172.32 -0.52 -14.27 16 10 C 0.17 3.82 5.30 -3.71 -0.02 3.80 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.10 -1.55 5.19 -26.53 -0.14 -1.69 16 13 C -0.12 -1.76 2.39 -90.34 -0.22 -1.98 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.13 1.69 5.08 -4.04 -0.02 1.67 16 16 N -0.72 -7.81 5.33 -60.29 -0.32 -8.13 16 17 C 0.50 5.93 7.84 -10.99 -0.09 5.84 16 18 O -0.51 -8.70 15.69 5.55 0.09 -8.61 16 19 C 0.09 0.73 6.94 -5.19 -0.04 0.70 16 20 N -0.28 -3.18 3.19 -62.44 -0.20 -3.37 16 21 C -0.05 -0.46 10.89 -17.05 -0.19 -0.64 16 22 C 0.01 0.09 6.88 -82.78 -0.57 -0.48 16 23 C -0.07 -0.60 6.33 -91.77 -0.58 -1.18 16 24 C -0.17 -1.01 10.03 -26.69 -0.27 -1.28 16 25 C -0.17 -1.23 10.24 -26.70 -0.27 -1.50 16 26 N -0.27 -4.00 12.41 33.29 0.41 -3.59 16 27 N -0.05 -0.78 12.14 60.35 0.73 -0.05 16 28 C 0.15 2.84 5.59 -3.71 -0.02 2.82 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.09 2.22 6.06 -51.93 -0.31 1.90 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.41 3.53 7.69 -40.82 -0.31 3.22 16 39 H 0.14 0.53 8.07 -51.92 -0.42 0.11 16 40 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.19 1.02 7.45 -52.49 -0.39 0.63 16 42 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.51 7.23 -51.93 -0.38 0.13 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 0.84 7.13 -51.93 -0.37 0.47 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -35.08 390.95 -8.78 -43.86 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.65 Total: 0.53 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.81 Total: -3.30 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.73 Total: -54.01 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.08 -8.78 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265584251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.064 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds