Wall clock time and date at job start Tue Mar 31 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 11 11 C 1.53187 * 108.77628 * 233.63550 * 10 9 7 12 12 C 1.53047 * 109.31470 * 305.36580 * 11 10 9 13 13 C 1.53349 * 109.60312 * 61.37322 * 12 11 10 14 14 H 1.08994 * 109.47524 * 58.55537 * 13 12 11 15 15 C 1.53003 * 109.68078 * 178.74970 * 13 12 11 16 16 N 1.46502 * 109.47260 * 184.75546 * 15 13 12 17 17 C 1.34770 * 120.00081 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00348 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.47351 * 180.02562 * 19 17 16 21 21 C 1.35307 * 125.87089 * 124.99356 * 20 19 17 22 22 C 1.35345 * 106.17299 * 179.97438 * 21 20 19 23 23 C 1.50706 * 126.74956 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49580 * 343.74624 * 23 22 21 25 25 C 1.52998 * 117.49607 * 275.08948 * 23 22 21 26 26 N 1.33770 * 106.50193 * 0.02562 * 22 21 20 27 27 N 1.28636 * 108.88209 * 359.73114 * 26 22 21 28 28 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 29 29 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58255 * 353.42549 * 10 9 7 31 31 H 1.09000 * 109.58150 * 113.70283 * 10 9 7 32 32 H 1.09000 * 109.49944 * 65.31598 * 11 10 9 33 33 H 1.09005 * 109.49966 * 185.41716 * 11 10 9 34 34 H 1.08995 * 109.45823 * 181.38501 * 12 11 10 35 35 H 1.08997 * 109.45689 * 301.36057 * 12 11 10 36 36 H 1.09003 * 109.47356 * 304.74990 * 15 13 12 37 37 H 1.08998 * 109.47102 * 64.75224 * 15 13 12 38 38 H 0.97004 * 119.99608 * 359.97438 * 16 15 13 39 39 H 1.09007 * 109.46924 * 299.99737 * 19 17 16 40 40 H 1.08998 * 109.47443 * 59.99626 * 19 17 16 41 41 H 1.07998 * 126.91067 * 0.02729 * 21 20 19 42 42 H 1.08997 * 115.55236 * 129.42179 * 23 22 21 43 43 H 1.08999 * 117.50166 * 0.02562 * 24 23 22 44 44 H 1.09004 * 117.49532 * 145.02183 * 24 23 22 45 45 H 1.09005 * 117.50103 * 214.98204 * 25 23 22 46 46 H 1.09009 * 117.50186 * 359.97374 * 25 23 22 47 47 H 1.09000 * 109.58339 * 246.15009 * 28 9 7 48 48 H 1.09003 * 109.58852 * 6.43598 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 0.2264 -2.3400 1.2683 11 6 0.4986 -3.3187 2.4150 12 6 0.8133 -4.7005 1.8372 13 6 2.0709 -4.6185 0.9634 14 1 2.9059 -4.2542 1.5616 15 6 2.4050 -6.0053 0.4099 16 7 3.6681 -5.9445 -0.3299 17 6 4.1634 -7.0555 -0.9100 18 8 3.5638 -8.1058 -0.8193 19 6 5.4630 -6.9931 -1.6705 20 7 5.7823 -8.3206 -2.2016 21 6 6.0319 -8.6169 -3.4980 22 6 6.2783 -9.9471 -3.5401 23 6 6.6111 -10.7643 -4.7618 24 6 6.3162 -10.1435 -6.1287 25 6 5.4438 -11.2858 -5.6023 26 7 6.1683 -10.3938 -2.2840 27 7 5.8789 -9.4046 -1.5142 28 6 1.8140 -3.6530 -0.1978 29 1 -0.4849 0.8400 0.0004 30 1 0.0994 -1.3342 1.6687 31 1 -0.6773 -2.6386 0.7370 32 1 1.3485 -2.9667 2.9997 33 1 -0.3817 -3.3837 3.0545 34 1 0.9833 -5.4045 2.6517 35 1 -0.0269 -5.0410 1.2321 36 1 2.5005 -6.7122 1.2341 37 1 1.6080 -6.3316 -0.2582 38 1 4.1475 -5.1043 -0.4027 39 1 5.3682 -6.2857 -2.4944 40 1 6.2599 -6.6675 -1.0020 41 1 6.0348 -7.9300 -4.3314 42 1 7.4932 -11.3989 -4.6770 43 1 5.8819 -9.1439 -6.1444 44 1 7.0042 -10.3700 -6.9433 45 1 5.5582 -12.2634 -6.0707 46 1 4.4351 -11.0382 -5.2713 47 1 1.0401 -4.0610 -0.8480 48 1 2.7331 -3.5130 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265584251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:47 Heat of formation + Delta-G solvation = 83.283098 kcal Electronic energy + Delta-G solvation = -28015.998492 eV Core-core repulsion = 24108.593508 eV Total energy + Delta-G solvation = -3907.404984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.28863 -40.92627 -39.36465 -38.15716 -36.35739 -35.44171 -34.70332 -32.29969 -32.13425 -31.69880 -29.78936 -27.24253 -26.61556 -25.03960 -23.92278 -23.69059 -22.99898 -22.38358 -21.82441 -21.27171 -20.56848 -18.83090 -18.55257 -18.43320 -17.24910 -16.86459 -16.68404 -16.55763 -16.30830 -15.87833 -15.59670 -15.53073 -15.28477 -15.05527 -14.76386 -14.50636 -14.04436 -14.00572 -13.75426 -13.47159 -13.27828 -12.99645 -12.89357 -12.56761 -12.52490 -12.30099 -12.23131 -12.18190 -11.94539 -11.82558 -11.73875 -11.59161 -11.48669 -11.27521 -11.19113 -11.08618 -10.79172 -10.53145 -10.17430 -9.98753 -8.66860 -7.85376 -5.31392 0.57043 1.24649 1.42277 1.47729 1.48791 1.50657 1.59867 2.12121 2.52303 2.87850 3.27444 3.30220 3.52599 3.60618 3.75533 3.90898 3.98370 4.00075 4.00857 4.04049 4.05046 4.07275 4.27684 4.39479 4.41251 4.56042 4.60263 4.75798 4.78196 4.85089 4.87069 4.90529 4.98374 5.00100 5.10527 5.19721 5.20234 5.23408 5.30427 5.31466 5.34932 5.44380 5.54517 5.58343 5.68282 5.78722 6.39191 6.42153 7.08217 7.16069 7.51497 7.87692 8.40099 9.21205 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002134 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.317408 B =13115.396746 C =14066.267572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.255 4.255 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.099 4.099 14 H 0.081 0.919 15 C 0.140 3.860 16 N -0.706 5.706 17 C 0.499 3.501 18 O -0.571 6.571 19 C 0.093 3.907 20 N -0.279 5.279 21 C -0.033 4.033 22 C -0.010 4.010 23 C -0.090 4.090 24 C -0.143 4.143 25 C -0.176 4.176 26 N -0.310 5.310 27 N -0.101 5.101 28 C 0.152 3.848 29 H 0.248 0.752 30 H 0.050 0.950 31 H -0.009 1.009 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.419 0.581 39 H 0.186 0.814 40 H 0.162 0.838 41 H 0.235 0.765 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.078 0.922 47 H 0.004 0.996 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.330 -14.083 -8.567 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.386 4.386 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.119 4.119 14 H 0.100 0.900 15 C 0.016 3.984 16 N -0.359 5.359 17 C 0.284 3.716 18 O -0.449 6.449 19 C -0.030 4.030 20 N -0.073 5.073 21 C -0.183 4.183 22 C -0.148 4.148 23 C -0.110 4.110 24 C -0.180 4.180 25 C -0.214 4.214 26 N -0.176 5.176 27 N -0.080 5.080 28 C 0.026 3.974 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.009 0.991 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.257 0.743 39 H 0.203 0.797 40 H 0.180 0.820 41 H 0.251 0.749 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.142 0.858 45 H 0.131 0.869 46 H 0.096 0.904 47 H 0.022 0.978 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.702 -15.279 -7.049 21.700 hybrid contribution -0.209 1.947 -0.703 2.081 sum 13.493 -13.332 -7.752 20.492 Atomic orbital electron populations 1.70206 1.06868 1.25633 1.55764 1.25833 0.95959 1.01662 1.01609 0.85241 0.78986 0.80002 0.76414 1.18369 1.22351 1.22297 1.19598 0.93030 0.85667 1.40260 0.90578 1.44317 1.35784 1.02426 1.50710 1.20615 0.87809 0.97671 0.89255 1.21991 1.00921 0.95916 0.98046 1.21397 0.96739 0.96719 0.98878 1.21766 0.98984 0.93300 0.97894 0.90019 1.21228 0.84988 0.96823 0.95389 1.45804 1.24648 1.11817 1.53632 1.20809 0.87190 0.83753 0.79889 1.90826 1.61604 1.31160 1.61334 1.22349 0.96877 0.79786 1.04033 1.47008 1.44184 1.09301 1.06776 1.23964 1.07489 0.98454 0.88412 1.21579 1.06669 0.92767 0.93762 1.20090 1.01302 1.02855 0.86745 1.23174 1.02229 0.98327 0.94300 1.23056 0.94980 1.00364 1.02982 1.74996 1.17412 1.22476 1.02687 1.78369 1.18940 0.88892 1.21796 1.21049 0.97462 0.85522 0.93333 0.94337 0.93139 0.99115 0.92640 0.91567 0.90488 0.92917 0.91423 0.92673 0.74285 0.79656 0.82012 0.74853 0.85947 0.87366 0.85848 0.86921 0.90354 0.97801 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.11 11.20 21.65 0.24 -53.87 16 2 C -0.06 -2.96 4.92 84.86 0.42 -2.54 16 3 Si 0.96 42.54 29.59 68.60 2.03 44.57 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.26 -12.92 9.58 84.03 0.81 -12.11 16 8 H 0.08 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -28.15 2.99 -699.08 -2.09 -30.24 16 10 C 0.17 7.97 5.30 86.36 0.46 8.43 16 11 C -0.13 -4.52 6.08 30.67 0.19 -4.33 16 12 C -0.10 -2.89 5.19 30.73 0.16 -2.73 16 13 C -0.10 -2.74 2.39 -10.61 -0.03 -2.76 16 14 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 15 C 0.14 3.40 5.08 86.38 0.44 3.84 16 16 N -0.71 -13.46 5.33 -463.05 -2.47 -15.93 16 17 C 0.50 10.77 7.84 87.66 0.69 11.46 16 18 O -0.57 -19.06 15.69 -3.04 -0.05 -19.10 16 19 C 0.09 1.11 6.94 85.63 0.59 1.71 16 20 N -0.28 -5.77 3.19 -351.45 -1.12 -6.89 16 21 C -0.03 -0.54 10.89 83.49 0.91 0.37 16 22 C -0.01 -0.21 6.88 41.60 0.29 0.07 16 23 C -0.09 -1.40 6.33 -11.54 -0.07 -1.48 16 24 C -0.14 -1.27 10.03 30.62 0.31 -0.96 16 25 C -0.18 -2.42 10.24 30.62 0.31 -2.11 16 26 N -0.31 -9.53 12.41 -48.60 -0.60 -10.14 16 27 N -0.10 -3.08 12.14 37.02 0.45 -2.63 16 28 C 0.15 5.39 5.59 86.36 0.48 5.87 16 29 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.05 2.68 6.06 -2.39 -0.01 2.67 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.42 5.71 7.69 -92.71 -0.71 5.00 16 39 H 0.19 0.39 8.07 -2.38 -0.02 0.37 16 40 H 0.16 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.24 1.35 7.45 -2.91 -0.02 1.33 16 42 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.11 0.70 7.23 -2.39 -0.02 0.68 16 44 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 45 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.07 2.09 7.13 -2.39 -0.02 2.08 16 Total: -1.00 -81.94 390.95 2.59 -79.35 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.25 Total: 12.15 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.95 Total: 2.73 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.59 Total: -119.69 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -81.94 2.59 -79.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265584251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.631 kcal (2) G-P(sol) polarization free energy of solvation -81.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds