Wall clock time and date at job start Tue Mar 31 2020 17:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99834 * 2 1 4 4 H 1.48498 * 109.46738 * 239.99785 * 3 2 1 5 5 H 1.48498 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47015 * 120.00110 * 3 2 1 7 7 C 1.38809 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00441 * 157.94743 * 7 2 1 9 9 N 1.36937 * 119.99706 * 337.95169 * 7 2 1 10 10 C 1.46499 * 120.00236 * 324.91552 * 9 7 2 11 11 C 1.52999 * 109.47021 * 270.00277 * 10 9 7 12 12 C 1.53001 * 109.46810 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00161 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99787 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.69623 * 59.44950 * 16 14 13 18 18 C 1.53429 * 109.69501 * 179.97438 * 16 14 13 19 19 C 1.53103 * 109.56038 * 169.43613 * 18 16 14 20 20 C 1.53425 * 109.58372 * 289.95125 * 19 18 16 21 21 C 1.50601 * 108.33321 * 49.81857 * 20 19 18 22 22 N 1.32908 * 129.16100 * 163.42971 * 21 20 19 23 23 N 1.29019 * 108.63570 * 180.08852 * 22 21 20 24 24 N 1.29112 * 110.25768 * 0.02562 * 23 22 21 25 25 H 0.96994 * 126.00359 * 179.97438 * 24 23 22 26 26 C 1.34393 * 107.98427 * 359.91009 * 24 23 22 27 27 C 1.46506 * 120.00017 * 144.92306 * 9 7 2 28 28 C 1.52996 * 117.49974 * 3.22865 * 27 9 7 29 29 C 1.53002 * 117.49445 * 294.57372 * 27 9 7 30 30 H 0.96996 * 119.99785 * 355.76104 * 1 2 3 31 31 H 1.09000 * 109.47486 * 150.00085 * 10 9 7 32 32 H 1.09002 * 109.46909 * 30.00109 * 10 9 7 33 33 H 1.09000 * 109.46996 * 60.00134 * 11 10 9 34 34 H 1.08991 * 109.47567 * 299.99847 * 11 10 9 35 35 H 1.09002 * 109.47253 * 299.99914 * 12 11 10 36 36 H 1.09000 * 109.47352 * 60.00019 * 12 11 10 37 37 H 0.97006 * 119.99314 * 0.02562 * 13 12 11 38 38 H 1.09003 * 109.45632 * 289.46470 * 18 16 14 39 39 H 1.09004 * 109.45776 * 49.42867 * 18 16 14 40 40 H 1.08997 * 109.45144 * 49.97939 * 19 18 16 41 41 H 1.09003 * 109.45727 * 169.91962 * 19 18 16 42 42 H 1.08997 * 109.69286 * 169.53291 * 20 19 18 43 43 H 1.09003 * 109.69237 * 290.06822 * 20 19 18 44 44 H 1.08997 * 115.55178 * 148.90798 * 27 9 7 45 45 H 1.09005 * 117.49891 * 0.02562 * 28 27 9 46 46 H 1.09002 * 117.50233 * 145.02193 * 28 27 9 47 47 H 1.09002 * 117.49575 * 214.98154 * 29 27 9 48 48 H 1.09004 * 117.49949 * 359.97022 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3444 0.4462 10 6 0.4455 -2.2802 1.5551 11 6 1.1885 -2.4655 2.8797 12 6 0.1909 -2.3977 4.0377 13 7 0.9024 -2.5746 5.3062 14 6 0.2220 -2.5518 6.4694 15 8 -0.9792 -2.3845 6.4661 16 6 0.9539 -2.7331 7.7741 17 1 1.7036 -1.9499 7.8867 18 6 -0.0419 -2.6662 8.9394 19 6 0.6503 -3.1087 10.2313 20 6 0.9322 -4.6157 10.1735 21 6 1.6103 -4.9209 8.8639 22 7 2.2942 -6.0025 8.5049 23 7 2.7056 -5.8464 7.2921 24 7 2.3212 -4.7024 6.8334 25 1 2.5047 -4.3525 5.9476 26 6 1.6210 -4.0824 7.7985 27 6 1.7040 -3.6309 -0.1857 28 6 2.7656 -3.6440 -1.2874 29 6 1.2876 -3.8160 -1.6463 30 1 -0.4850 0.8377 0.0621 31 1 -0.2969 -3.0701 1.4414 32 1 -0.0521 -1.3104 1.5502 33 1 1.9309 -1.6755 2.9934 34 1 1.6861 -3.4351 2.8846 35 1 -0.3064 -1.4278 4.0327 36 1 -0.5518 -3.1874 3.9242 37 1 1.8632 -2.7080 5.3088 38 1 -0.4010 -1.6431 9.0518 39 1 -0.8849 -3.3263 8.7350 40 1 1.5899 -2.5677 10.3433 41 1 0.0038 -2.8927 11.0819 42 1 1.5841 -4.8993 10.9997 43 1 -0.0055 -5.1676 10.2396 44 1 1.6464 -4.5011 0.4681 45 1 3.2387 -2.6955 -1.5417 46 1 3.4063 -4.5230 -1.3585 47 1 0.9564 -4.8081 -1.9533 48 1 0.7875 -2.9808 -2.1368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266153660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:23 Heat of formation + Delta-G solvation = 91.671498 kcal Electronic energy + Delta-G solvation = -28747.004372 eV Core-core repulsion = 24839.963137 eV Total energy + Delta-G solvation = -3907.041235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.82880 -40.08107 -37.37122 -37.06037 -35.51115 -34.31978 -33.62331 -31.80403 -30.88954 -30.43920 -29.43273 -25.92079 -24.81145 -23.77060 -23.29393 -22.73831 -21.52455 -21.27825 -20.84944 -19.90621 -19.71592 -18.50005 -17.35042 -16.62465 -16.47333 -15.92423 -15.77979 -15.50676 -15.03678 -14.71864 -14.49153 -14.24779 -14.14077 -13.95853 -13.80764 -13.35415 -12.74844 -12.58902 -12.35669 -12.02827 -11.91518 -11.72273 -11.68499 -11.60123 -11.41252 -11.13248 -11.00900 -10.93442 -10.84575 -10.75811 -10.67508 -10.31750 -10.24550 -10.00440 -9.76419 -9.66730 -9.34871 -9.19214 -9.18156 -8.56241 -6.68177 -5.89081 -3.50225 1.16590 2.15126 2.24814 2.45791 2.94190 3.27310 3.34808 3.35285 3.87677 4.01515 4.26025 4.34762 4.38829 4.50933 4.80800 4.84755 4.86753 4.91811 5.02143 5.05810 5.21078 5.22997 5.45637 5.50181 5.55359 5.58703 5.66003 5.67759 5.81666 5.83733 5.89549 5.95338 6.02219 6.11972 6.17069 6.23531 6.42342 6.43848 6.48670 6.53269 6.60939 6.93679 6.97777 7.15606 7.23387 7.54447 7.69923 7.93918 8.13060 8.36570 9.04381 9.67334 10.22968 11.06773 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.002749 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.333970 B =10184.089384 C =11246.193866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.012 3.988 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.551 5.551 10 C 0.150 3.850 11 C -0.148 4.148 12 C 0.119 3.881 13 N -0.730 5.730 14 C 0.512 3.488 15 O -0.521 6.521 16 C -0.033 4.033 17 H 0.120 0.880 18 C -0.098 4.098 19 C -0.119 4.119 20 C -0.036 4.036 21 C -0.005 4.005 22 N -0.258 5.258 23 N -0.078 5.078 24 N -0.379 5.379 25 H 0.446 0.554 26 C -0.012 4.012 27 C 0.119 3.881 28 C -0.196 4.196 29 C -0.221 4.221 30 H 0.256 0.744 31 H 0.028 0.972 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.388 0.612 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -5.335 18.304 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.189 4.189 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.268 5.268 10 C 0.023 3.977 11 C -0.188 4.188 12 C -0.004 4.004 13 N -0.382 5.382 14 C 0.296 3.704 15 O -0.396 6.396 16 C -0.057 4.057 17 H 0.137 0.863 18 C -0.136 4.136 19 C -0.157 4.157 20 C -0.075 4.075 21 C -0.145 4.145 22 N -0.124 5.124 23 N -0.057 5.057 24 N -0.099 5.099 25 H 0.293 0.707 26 C -0.148 4.148 27 C 0.010 3.990 28 C -0.234 4.234 29 C -0.262 4.262 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.222 0.778 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.194 -6.433 18.022 19.261 hybrid contribution 0.662 1.962 -0.775 2.211 sum 2.856 -4.471 17.248 18.045 Atomic orbital electron populations 1.70029 1.05484 1.26303 1.50579 1.25131 0.94975 0.98752 1.00033 0.86478 0.79245 0.83422 0.78326 1.20644 1.21505 1.20933 1.19031 0.94412 0.85505 1.40057 0.91647 1.43396 1.49102 1.01431 1.32843 1.20845 0.90461 1.03431 0.83000 1.22493 0.98900 1.01208 0.96198 1.21573 0.95612 1.02302 0.80937 1.46359 1.10890 1.73865 1.07107 1.20370 0.88109 0.77049 0.84894 1.90741 1.13988 1.47787 1.87046 1.20092 0.98400 0.91813 0.95362 0.86281 1.21481 0.97009 1.03950 0.91195 1.21683 1.01470 0.94743 0.97855 1.20037 0.99895 0.96589 0.90983 1.21728 1.03142 0.91513 0.98072 1.74863 1.11703 1.21871 1.03945 1.78626 1.20113 1.00581 1.06397 1.44869 1.36081 1.13799 1.15162 0.70720 1.21467 1.03283 0.99074 0.90959 1.21225 1.00470 0.90147 0.87126 1.23034 0.91947 1.01840 1.06603 1.23361 0.97344 1.00679 1.04842 0.93369 0.95312 0.87896 0.91374 0.93289 0.90877 0.91581 0.77802 0.89589 0.89853 0.91155 0.89869 0.89454 0.89541 0.89677 0.88498 0.90781 0.91221 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 11.33 55.49 0.63 -23.33 16 2 C 0.01 0.30 4.96 -17.43 -0.09 0.22 16 3 Si 0.90 20.44 29.61 -169.99 -5.03 15.40 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.59 8.63 -15.06 -0.13 -6.72 16 8 H 0.07 1.67 6.55 -52.49 -0.34 1.32 16 9 N -0.55 -12.67 2.78 -165.66 -0.46 -13.13 16 10 C 0.15 3.14 5.34 -4.04 -0.02 3.12 16 11 C -0.15 -2.41 5.65 -26.73 -0.15 -2.56 16 12 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 13 N -0.73 -8.34 5.11 -60.29 -0.31 -8.65 16 14 C 0.51 6.17 7.13 -10.99 -0.08 6.09 16 15 O -0.52 -8.26 15.83 5.56 0.09 -8.17 16 16 C -0.03 -0.28 2.90 -92.78 -0.27 -0.55 16 17 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.10 -0.76 4.67 -26.46 -0.12 -0.88 16 19 C -0.12 -0.67 5.90 -26.46 -0.16 -0.83 16 20 C -0.04 -0.26 6.30 -27.71 -0.17 -0.43 16 21 C 0.00 -0.05 7.11 -83.12 -0.59 -0.64 16 22 N -0.26 -3.40 12.40 33.16 0.41 -2.99 16 23 N -0.08 -1.01 13.40 60.35 0.81 -0.20 16 24 N -0.38 -3.85 6.77 33.39 0.23 -3.63 16 25 H 0.45 3.54 6.90 -190.08 -1.31 2.23 16 26 C -0.01 -0.12 6.38 -82.50 -0.53 -0.65 16 27 C 0.12 2.43 6.56 -67.93 -0.45 1.98 16 28 C -0.20 -3.73 9.80 -26.70 -0.26 -3.99 16 29 C -0.22 -4.40 10.36 -26.70 -0.28 -4.68 16 30 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 31 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.10 2.49 5.36 -51.93 -0.28 2.21 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.39 3.40 6.64 -40.82 -0.27 3.13 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.78 7.74 -51.93 -0.40 0.38 16 40 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.10 2.01 6.37 -51.93 -0.33 1.68 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -31.41 385.82 -9.55 -40.96 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.41 Total: 6.75 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.32 Total: -8.82 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 1.31 Total: -51.93 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.41 -9.55 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266153660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.628 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds