Wall clock time and date at job start Tue Mar 31 2020 17:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99834 * 2 1 4 4 H 1.48498 * 109.46738 * 239.99785 * 3 2 1 5 5 H 1.48498 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47015 * 120.00110 * 3 2 1 7 7 C 1.38809 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00441 * 157.94743 * 7 2 1 9 9 N 1.36937 * 119.99706 * 337.95169 * 7 2 1 10 10 C 1.46499 * 120.00236 * 324.91552 * 9 7 2 11 11 C 1.52999 * 109.47021 * 270.00277 * 10 9 7 12 12 C 1.53001 * 109.46810 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00161 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99787 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.69623 * 59.44950 * 16 14 13 18 18 C 1.53429 * 109.69501 * 179.97438 * 16 14 13 19 19 C 1.53103 * 109.56038 * 169.43613 * 18 16 14 20 20 C 1.53425 * 109.58372 * 289.95125 * 19 18 16 21 21 C 1.50601 * 108.33321 * 49.81857 * 20 19 18 22 22 N 1.32908 * 129.16100 * 163.42971 * 21 20 19 23 23 N 1.29019 * 108.63570 * 180.08852 * 22 21 20 24 24 N 1.29112 * 110.25768 * 0.02562 * 23 22 21 25 25 H 0.96994 * 126.00359 * 179.97438 * 24 23 22 26 26 C 1.34393 * 107.98427 * 359.91009 * 24 23 22 27 27 C 1.46506 * 120.00017 * 144.92306 * 9 7 2 28 28 C 1.52996 * 117.49974 * 3.22865 * 27 9 7 29 29 C 1.53002 * 117.49445 * 294.57372 * 27 9 7 30 30 H 0.96996 * 119.99785 * 355.76104 * 1 2 3 31 31 H 1.09000 * 109.47486 * 150.00085 * 10 9 7 32 32 H 1.09002 * 109.46909 * 30.00109 * 10 9 7 33 33 H 1.09000 * 109.46996 * 60.00134 * 11 10 9 34 34 H 1.08991 * 109.47567 * 299.99847 * 11 10 9 35 35 H 1.09002 * 109.47253 * 299.99914 * 12 11 10 36 36 H 1.09000 * 109.47352 * 60.00019 * 12 11 10 37 37 H 0.97006 * 119.99314 * 0.02562 * 13 12 11 38 38 H 1.09003 * 109.45632 * 289.46470 * 18 16 14 39 39 H 1.09004 * 109.45776 * 49.42867 * 18 16 14 40 40 H 1.08997 * 109.45144 * 49.97939 * 19 18 16 41 41 H 1.09003 * 109.45727 * 169.91962 * 19 18 16 42 42 H 1.08997 * 109.69286 * 169.53291 * 20 19 18 43 43 H 1.09003 * 109.69237 * 290.06822 * 20 19 18 44 44 H 1.08997 * 115.55178 * 148.90798 * 27 9 7 45 45 H 1.09005 * 117.49891 * 0.02562 * 28 27 9 46 46 H 1.09002 * 117.50233 * 145.02193 * 28 27 9 47 47 H 1.09002 * 117.49575 * 214.98154 * 29 27 9 48 48 H 1.09004 * 117.49949 * 359.97022 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3444 0.4462 10 6 0.4455 -2.2802 1.5551 11 6 1.1885 -2.4655 2.8797 12 6 0.1909 -2.3977 4.0377 13 7 0.9024 -2.5746 5.3062 14 6 0.2220 -2.5518 6.4694 15 8 -0.9792 -2.3845 6.4661 16 6 0.9539 -2.7331 7.7741 17 1 1.7036 -1.9499 7.8867 18 6 -0.0419 -2.6662 8.9394 19 6 0.6503 -3.1087 10.2313 20 6 0.9322 -4.6157 10.1735 21 6 1.6103 -4.9209 8.8639 22 7 2.2942 -6.0025 8.5049 23 7 2.7056 -5.8464 7.2921 24 7 2.3212 -4.7024 6.8334 25 1 2.5047 -4.3525 5.9476 26 6 1.6210 -4.0824 7.7985 27 6 1.7040 -3.6309 -0.1857 28 6 2.7656 -3.6440 -1.2874 29 6 1.2876 -3.8160 -1.6463 30 1 -0.4850 0.8377 0.0621 31 1 -0.2969 -3.0701 1.4414 32 1 -0.0521 -1.3104 1.5502 33 1 1.9309 -1.6755 2.9934 34 1 1.6861 -3.4351 2.8846 35 1 -0.3064 -1.4278 4.0327 36 1 -0.5518 -3.1874 3.9242 37 1 1.8632 -2.7080 5.3088 38 1 -0.4010 -1.6431 9.0518 39 1 -0.8849 -3.3263 8.7350 40 1 1.5899 -2.5677 10.3433 41 1 0.0038 -2.8927 11.0819 42 1 1.5841 -4.8993 10.9997 43 1 -0.0055 -5.1676 10.2396 44 1 1.6464 -4.5011 0.4681 45 1 3.2387 -2.6955 -1.5417 46 1 3.4063 -4.5230 -1.3585 47 1 0.9564 -4.8081 -1.9533 48 1 0.7875 -2.9808 -2.1368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266153660.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:22 Heat of formation + Delta-G solvation = 71.481677 kcal Electronic energy + Delta-G solvation = -28747.879868 eV Core-core repulsion = 24839.963137 eV Total energy + Delta-G solvation = -3907.916732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.65059 -41.07860 -38.90986 -37.88084 -36.73388 -35.45402 -34.97435 -33.35792 -31.84228 -31.18197 -30.85982 -27.38195 -25.97219 -24.98970 -24.19746 -23.58412 -23.05730 -22.55807 -21.99586 -21.42833 -20.55136 -19.35229 -18.30839 -18.22098 -17.44863 -17.30200 -16.95392 -16.77549 -16.35686 -16.10019 -15.65752 -15.22823 -15.01682 -14.90487 -14.68547 -14.45299 -14.34110 -13.95148 -13.67725 -13.28219 -13.15931 -12.79236 -12.70289 -12.62287 -12.51841 -12.45607 -12.34584 -12.25070 -12.06394 -12.02279 -11.86126 -11.67199 -11.47549 -11.39320 -11.32570 -11.08287 -10.90281 -10.47378 -10.29175 -9.99590 -8.55287 -7.80851 -5.46370 0.35019 1.27308 1.41358 1.44753 1.47196 1.53346 1.61940 1.98284 2.48574 3.12836 3.15651 3.26729 3.38993 3.47609 3.52448 3.71313 3.89621 4.11837 4.14110 4.22375 4.27282 4.29366 4.31664 4.42438 4.44482 4.51899 4.56375 4.57756 4.73000 4.86328 4.92570 4.97150 4.98728 5.04662 5.07314 5.11497 5.18684 5.26714 5.32087 5.33850 5.43805 5.45564 5.52599 5.67578 5.70617 5.83753 6.28264 6.43740 6.98517 7.14171 7.28134 7.84443 8.33948 9.09784 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.002749 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.333970 B =10184.089384 C =11246.193866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.036 4.036 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.259 4.259 8 H 0.062 0.938 9 N -0.568 5.568 10 C 0.148 3.852 11 C -0.125 4.125 12 C 0.132 3.868 13 N -0.720 5.720 14 C 0.511 3.489 15 O -0.561 6.561 16 C -0.022 4.022 17 H 0.153 0.847 18 C -0.099 4.099 19 C -0.109 4.109 20 C -0.038 4.038 21 C -0.011 4.011 22 N -0.288 5.288 23 N -0.106 5.106 24 N -0.370 5.370 25 H 0.454 0.546 26 C -0.009 4.009 27 C 0.103 3.897 28 C -0.180 4.180 29 C -0.223 4.223 30 H 0.250 0.750 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.404 0.596 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -5.780 20.043 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.285 5.285 10 C 0.021 3.979 11 C -0.165 4.165 12 C 0.008 3.992 13 N -0.373 5.373 14 C 0.297 3.703 15 O -0.439 6.439 16 C -0.045 4.045 17 H 0.170 0.830 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.077 4.077 21 C -0.151 4.151 22 N -0.153 5.153 23 N -0.085 5.085 24 N -0.092 5.092 25 H 0.302 0.698 26 C -0.146 4.146 27 C -0.005 4.005 28 C -0.218 4.218 29 C -0.264 4.264 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.118 0.882 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.764 -6.910 19.761 21.270 hybrid contribution 0.153 2.042 -1.370 2.463 sum 3.917 -4.869 18.391 19.424 Atomic orbital electron populations 1.70167 1.06713 1.26355 1.52537 1.25747 0.95509 1.01319 1.00730 0.85605 0.77969 0.80059 0.78434 1.20574 1.22263 1.19984 1.19199 0.94258 0.86551 1.38867 0.92062 1.43613 1.49179 1.01885 1.33856 1.20761 0.90686 1.01560 0.84878 1.22124 0.98250 1.01913 0.94231 1.21184 0.95095 1.01042 0.81868 1.46153 1.11642 1.73471 1.06046 1.20973 0.87735 0.75781 0.85813 1.90731 1.15921 1.49561 1.87651 1.20180 0.98876 0.92020 0.93431 0.83013 1.21525 0.96309 1.04093 0.91783 1.21665 1.02322 0.93403 0.97285 1.20229 0.99888 0.97892 0.89726 1.22330 1.02538 0.90722 0.99548 1.74832 1.12883 1.23269 1.04329 1.78573 1.21419 1.01728 1.06772 1.44873 1.35498 1.13237 1.15548 0.69765 1.21668 1.02847 0.99338 0.90706 1.21553 1.01430 0.89866 0.87683 1.23033 0.91642 1.02276 1.04893 1.23281 0.98085 1.00756 1.04299 0.94038 0.95404 0.91249 0.92328 0.91139 0.92949 0.92085 0.75949 0.88775 0.91855 0.89810 0.87657 0.88240 0.89288 0.86889 0.90724 0.87104 0.88248 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.26 11.33 21.65 0.25 -51.01 16 2 C -0.04 -1.87 4.96 84.86 0.42 -1.45 16 3 Si 0.95 42.52 29.61 68.60 2.03 44.55 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.26 -13.17 8.63 84.03 0.73 -12.45 16 8 H 0.06 3.13 6.55 -2.91 -0.02 3.11 16 9 N -0.57 -26.07 2.78 -678.03 -1.88 -27.95 16 10 C 0.15 6.26 5.34 86.38 0.46 6.72 16 11 C -0.13 -3.98 5.65 30.59 0.17 -3.81 16 12 C 0.13 3.80 5.67 86.38 0.49 4.29 16 13 N -0.72 -15.39 5.11 -463.05 -2.37 -17.76 16 14 C 0.51 11.61 7.13 87.66 0.63 12.23 16 15 O -0.56 -17.58 15.83 -3.02 -0.05 -17.63 16 16 C -0.02 -0.32 2.90 -12.19 -0.04 -0.36 16 17 H 0.15 1.32 8.14 -2.39 -0.02 1.31 16 18 C -0.10 -1.29 4.67 30.77 0.14 -1.15 16 19 C -0.11 -0.87 5.90 30.77 0.18 -0.69 16 20 C -0.04 -0.47 6.30 29.96 0.19 -0.28 16 21 C -0.01 -0.21 7.11 41.75 0.30 0.09 16 22 N -0.29 -7.35 12.40 -48.99 -0.61 -7.96 16 23 N -0.11 -2.65 13.40 37.02 0.50 -2.16 16 24 N -0.37 -6.94 6.77 -48.27 -0.33 -7.26 16 25 H 0.45 6.33 6.90 -219.69 -1.52 4.82 16 26 C -0.01 -0.16 6.38 41.50 0.26 0.10 16 27 C 0.10 4.02 6.56 44.99 0.30 4.32 16 28 C -0.18 -6.51 9.80 30.61 0.30 -6.21 16 29 C -0.22 -8.65 10.36 30.62 0.32 -8.33 16 30 H 0.25 13.74 8.32 -92.71 -0.77 12.97 16 31 H 0.03 1.15 8.07 -2.39 -0.02 1.13 16 32 H 0.07 3.48 5.36 -2.39 -0.01 3.47 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.40 6.15 6.64 -92.70 -0.62 5.54 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.11 7.74 -2.39 -0.02 1.09 16 40 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 45 H 0.07 3.04 6.37 -2.38 -0.02 3.03 16 46 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.05 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -70.39 385.82 1.25 -69.14 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -1.14 Total: 25.00 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.85 Total: -6.96 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -4.45 Total: -114.10 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.39 1.25 -69.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266153660.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.625 kcal (2) G-P(sol) polarization free energy of solvation -70.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds