Wall clock time and date at job start Tue Mar 31 2020 18:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99967 * 2 1 4 4 H 1.48510 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47513 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.47290 * 60.00002 * 3 2 1 7 7 C 1.38813 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64594 * 359.97114 * 9 7 2 11 11 C 1.54909 * 104.83351 * 155.90840 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10 14 14 C 1.53000 * 110.72145 * 206.15534 * 12 11 10 15 15 C 1.53005 * 109.46967 * 184.99928 * 14 12 11 16 16 N 1.46497 * 109.47062 * 180.02562 * 15 14 12 17 17 C 1.34775 * 120.00083 * 180.02562 * 16 15 14 18 18 O 1.21595 * 119.99805 * 359.97438 * 17 16 15 19 19 C 1.47523 * 119.99857 * 179.97438 * 17 16 15 20 20 C 1.36603 * 125.76763 * 179.71336 * 19 17 16 21 21 N 1.34811 * 106.83628 * 179.90022 * 20 19 17 22 22 C 1.46504 * 126.59314 * 180.15326 * 21 20 19 23 23 C 1.53782 * 113.61457 * 14.40449 * 22 21 20 24 24 C 1.53955 * 87.01935 * 220.05032 * 23 22 21 25 25 C 1.53778 * 87.11082 * 25.36344 * 24 23 22 26 26 N 1.40214 * 106.81609 * 0.35934 * 21 20 19 27 27 N 1.28770 * 108.36323 * 359.77166 * 26 21 20 28 28 C 1.47016 * 125.64965 * 180.02562 * 9 7 2 29 29 H 0.96996 * 120.00056 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36544 * 37.07261 * 10 9 7 31 31 H 1.09002 * 110.46474 * 274.79611 * 10 9 7 32 32 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 33 33 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 34 34 H 1.08996 * 109.46874 * 305.00027 * 14 12 11 35 35 H 1.09005 * 109.47018 * 65.00123 * 14 12 11 36 36 H 1.09007 * 109.46917 * 299.99711 * 15 14 12 37 37 H 1.08996 * 109.46966 * 59.99640 * 15 14 12 38 38 H 0.97002 * 119.99705 * 359.97438 * 16 15 14 39 39 H 1.07993 * 126.57902 * 0.04246 * 20 19 17 40 40 H 1.08994 * 112.84783 * 145.60691 * 22 21 20 41 41 H 1.08996 * 113.61086 * 334.57528 * 23 22 21 42 42 H 1.08999 * 113.60819 * 105.46993 * 23 22 21 43 43 H 1.09000 * 113.53347 * 270.81079 * 24 23 22 44 44 H 1.09001 * 113.66103 * 139.93960 * 24 23 22 45 45 H 1.08999 * 113.61530 * 220.08394 * 25 24 23 46 46 H 1.09009 * 113.69056 * 89.19981 * 25 24 23 47 47 H 1.09000 * 109.88531 * 300.43071 * 28 9 7 48 48 H 1.08998 * 109.88872 * 61.60792 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7784 -4.7532 -0.0261 13 1 0.5460 -5.0989 0.9812 14 6 1.1227 -5.9319 -0.9387 15 6 2.2022 -6.7909 -0.2769 16 7 2.5323 -7.9193 -1.1510 17 6 3.4642 -8.8158 -0.7712 18 8 4.0313 -8.6878 0.2968 19 6 3.7961 -9.9523 -1.6512 20 6 4.7207 -10.9227 -1.3876 21 7 4.7121 -11.7662 -2.4392 22 6 5.5384 -12.9647 -2.6042 23 6 6.2203 -13.4265 -1.3055 24 6 7.4635 -13.7305 -2.1612 25 6 6.9462 -12.6720 -3.1495 26 7 3.7639 -11.2733 -3.3468 27 7 3.2443 -10.2047 -2.8504 28 6 1.9319 -3.7274 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5992 -1.7592 -0.6154 31 1 -0.5291 -2.4858 1.0183 32 1 -1.3590 -4.3329 -0.2771 33 1 -0.3526 -3.8988 -1.6991 34 1 0.2302 -6.5349 -1.1056 35 1 1.4915 -5.5567 -1.8933 36 1 3.0947 -6.1878 -0.1100 37 1 1.8334 -7.1660 0.6777 38 1 2.0796 -8.0215 -2.0028 39 1 5.3381 -11.0007 -0.5050 40 1 5.0223 -13.7647 -3.1348 41 1 6.3726 -12.6244 -0.5834 42 1 5.7648 -14.3133 -0.8648 43 1 7.4743 -14.7410 -2.5696 44 1 8.4029 -13.4571 -1.6805 45 1 7.0761 -12.9506 -4.1952 46 1 7.2970 -11.6627 -2.9336 47 1 2.5584 -3.8515 -0.8817 48 1 2.5281 -3.8639 0.9038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267559318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:41 Heat of formation + Delta-G solvation = 100.705304 kcal Electronic energy + Delta-G solvation = -27389.372480 eV Core-core repulsion = 23482.722980 eV Total energy + Delta-G solvation = -3906.649500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62101 -39.72415 -39.18751 -37.72576 -35.20809 -33.60512 -32.92522 -31.44234 -30.57490 -28.92024 -27.00496 -26.59607 -26.29186 -24.81956 -23.59997 -22.77745 -22.07111 -20.75364 -20.22918 -20.02269 -19.38640 -18.53372 -16.85091 -16.74484 -16.61843 -16.06873 -15.98133 -15.52893 -15.06250 -14.82867 -14.54959 -14.23265 -13.82565 -13.58519 -13.51501 -13.35213 -13.21107 -12.67284 -12.45781 -12.38473 -12.20671 -11.86402 -11.64465 -11.60417 -11.53453 -11.51189 -11.24455 -11.01855 -10.85034 -10.72464 -10.62510 -10.33093 -10.07735 -9.92296 -9.83809 -9.69435 -9.61679 -9.40194 -9.03758 -8.58717 -6.74926 -5.58798 -2.99799 0.78998 1.46923 1.60993 3.04423 3.16248 3.40627 3.43833 3.49253 3.51869 3.60865 3.90193 3.91262 3.94936 4.35544 4.49896 4.54971 4.68302 4.77299 4.84130 4.95940 5.01810 5.06732 5.14677 5.17244 5.18193 5.36382 5.42062 5.53781 5.54918 5.66177 5.71009 5.86085 5.95550 6.00657 6.09747 6.25216 6.30441 6.44222 6.47689 6.68483 6.71866 6.84713 7.06360 7.36048 7.60320 7.68079 7.70771 7.93165 8.09268 8.43901 9.29510 9.90713 10.56387 11.45195 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.001724 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.247936 B =16238.088682 C =16759.685964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.139 4.139 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.117 4.117 15 C 0.118 3.882 16 N -0.712 5.712 17 C 0.602 3.398 18 O -0.540 6.540 19 C -0.099 4.099 20 C 0.092 3.908 21 N -0.351 5.351 22 C 0.121 3.879 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.146 4.146 26 N -0.065 5.065 27 N -0.205 5.205 28 C 0.139 3.861 29 H 0.250 0.750 30 H 0.105 0.895 31 H 0.010 0.990 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.408 0.592 39 H 0.202 0.798 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.023 0.977 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -31.394 -5.147 33.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.005 4.005 16 N -0.362 5.362 17 C 0.385 3.615 18 O -0.416 6.416 19 C -0.239 4.239 20 C -0.065 4.065 21 N -0.135 5.135 22 C 0.019 3.981 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.184 4.184 26 N -0.045 5.045 27 N -0.079 5.079 28 C 0.013 3.987 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.219 0.781 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.041 0.959 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.691 -31.287 -5.734 33.557 hybrid contribution 0.771 0.780 0.561 1.231 sum 11.462 -30.507 -5.173 32.997 Atomic orbital electron populations 1.69818 1.04859 1.24507 1.58024 1.24785 0.95734 0.97680 1.02724 0.86007 0.78667 0.83717 0.77191 1.20558 1.21807 1.21820 1.19147 0.90543 0.82570 1.42475 0.90499 1.44527 1.02029 0.99838 1.86753 1.21915 0.84686 0.92681 0.98111 1.23042 0.95883 0.98802 1.00016 1.22103 0.97512 0.93756 0.98315 0.90916 1.21802 0.97574 0.96462 0.99690 1.21573 0.99312 0.86287 0.93305 1.45868 1.40332 1.26400 1.23596 1.16741 0.79722 0.80526 0.84473 1.90821 1.52717 1.75466 1.22645 1.21518 1.03831 1.02167 0.96347 1.23239 0.99083 0.90089 0.94045 1.50582 1.28832 1.20151 1.13950 1.23472 0.89460 0.84457 1.00675 1.23518 0.96477 1.02948 0.95662 1.22746 0.98036 0.99589 0.96965 1.23455 0.92833 1.00999 1.01141 1.81998 1.02725 1.07043 1.12726 1.74645 1.18429 1.07774 1.07049 1.21386 0.93702 0.85888 0.97680 0.93885 0.87739 0.97164 0.92500 0.92172 0.91478 0.91021 0.90711 0.91202 0.75705 0.78093 0.84763 0.88484 0.89230 0.88946 0.89635 0.89537 0.88905 0.95930 0.96254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.50 10.09 55.49 0.56 -26.94 16 2 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 7 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.61 -16.00 3.39 -170.04 -0.58 -16.57 16 10 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 11 C -0.14 -2.64 6.53 -24.58 -0.16 -2.80 16 12 C -0.10 -1.68 2.93 -88.75 -0.26 -1.94 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.12 -1.59 4.73 -26.73 -0.13 -1.71 16 15 C 0.12 1.58 5.56 -4.04 -0.02 1.56 16 16 N -0.71 -8.87 5.55 -61.35 -0.34 -9.21 16 17 C 0.60 8.10 7.82 -12.48 -0.10 8.00 16 18 O -0.54 -8.62 16.86 5.28 0.09 -8.54 16 19 C -0.10 -1.16 6.99 -83.55 -0.58 -1.74 16 20 C 0.09 0.80 10.49 -16.83 -0.18 0.63 16 21 N -0.35 -2.81 3.83 -53.77 -0.21 -3.01 16 22 C 0.12 0.50 5.05 -67.12 -0.34 0.17 16 23 C -0.15 -0.33 7.47 -25.83 -0.19 -0.53 16 24 C -0.14 -0.21 8.09 -25.83 -0.21 -0.42 16 25 C -0.15 -0.47 7.88 -25.92 -0.20 -0.68 16 26 N -0.07 -0.74 13.79 60.35 0.83 0.10 16 27 N -0.21 -2.52 12.04 32.85 0.40 -2.13 16 28 C 0.14 2.98 6.24 -3.04 -0.02 2.96 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.10 2.91 5.88 -51.93 -0.31 2.61 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.00 7.94 -51.93 -0.41 0.58 16 36 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 4.50 8.16 -40.82 -0.33 4.16 16 39 H 0.20 1.19 6.79 -52.49 -0.36 0.83 16 40 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.22 6.39 -51.93 -0.33 -0.11 16 42 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 47 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -34.85 390.25 -8.62 -43.47 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.57 Total: -0.90 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.66 Total: 0.29 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.66 Total: -57.77 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.85 -8.62 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267559318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.172 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds