Wall clock time and date at job start Tue Mar 31 2020 18:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99967 * 2 1 4 4 H 1.48510 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47513 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.47290 * 60.00002 * 3 2 1 7 7 C 1.38813 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64594 * 359.97114 * 9 7 2 11 11 C 1.54909 * 104.83351 * 155.90840 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10 14 14 C 1.53000 * 110.72145 * 206.15534 * 12 11 10 15 15 C 1.53005 * 109.46967 * 184.99928 * 14 12 11 16 16 N 1.46497 * 109.47062 * 180.02562 * 15 14 12 17 17 C 1.34775 * 120.00083 * 180.02562 * 16 15 14 18 18 O 1.21595 * 119.99805 * 359.97438 * 17 16 15 19 19 C 1.47523 * 119.99857 * 179.97438 * 17 16 15 20 20 C 1.36603 * 125.76763 * 179.71336 * 19 17 16 21 21 N 1.34811 * 106.83628 * 179.90022 * 20 19 17 22 22 C 1.46504 * 126.59314 * 180.15326 * 21 20 19 23 23 C 1.53782 * 113.61457 * 14.40449 * 22 21 20 24 24 C 1.53955 * 87.01935 * 220.05032 * 23 22 21 25 25 C 1.53778 * 87.11082 * 25.36344 * 24 23 22 26 26 N 1.40214 * 106.81609 * 0.35934 * 21 20 19 27 27 N 1.28770 * 108.36323 * 359.77166 * 26 21 20 28 28 C 1.47016 * 125.64965 * 180.02562 * 9 7 2 29 29 H 0.96996 * 120.00056 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36544 * 37.07261 * 10 9 7 31 31 H 1.09002 * 110.46474 * 274.79611 * 10 9 7 32 32 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 33 33 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 34 34 H 1.08996 * 109.46874 * 305.00027 * 14 12 11 35 35 H 1.09005 * 109.47018 * 65.00123 * 14 12 11 36 36 H 1.09007 * 109.46917 * 299.99711 * 15 14 12 37 37 H 1.08996 * 109.46966 * 59.99640 * 15 14 12 38 38 H 0.97002 * 119.99705 * 359.97438 * 16 15 14 39 39 H 1.07993 * 126.57902 * 0.04246 * 20 19 17 40 40 H 1.08994 * 112.84783 * 145.60691 * 22 21 20 41 41 H 1.08996 * 113.61086 * 334.57528 * 23 22 21 42 42 H 1.08999 * 113.60819 * 105.46993 * 23 22 21 43 43 H 1.09000 * 113.53347 * 270.81079 * 24 23 22 44 44 H 1.09001 * 113.66103 * 139.93960 * 24 23 22 45 45 H 1.08999 * 113.61530 * 220.08394 * 25 24 23 46 46 H 1.09009 * 113.69056 * 89.19981 * 25 24 23 47 47 H 1.09000 * 109.88531 * 300.43071 * 28 9 7 48 48 H 1.08998 * 109.88872 * 61.60792 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7784 -4.7532 -0.0261 13 1 0.5460 -5.0989 0.9812 14 6 1.1227 -5.9319 -0.9387 15 6 2.2022 -6.7909 -0.2769 16 7 2.5323 -7.9193 -1.1510 17 6 3.4642 -8.8158 -0.7712 18 8 4.0313 -8.6878 0.2968 19 6 3.7961 -9.9523 -1.6512 20 6 4.7207 -10.9227 -1.3876 21 7 4.7121 -11.7662 -2.4392 22 6 5.5384 -12.9647 -2.6042 23 6 6.2203 -13.4265 -1.3055 24 6 7.4635 -13.7305 -2.1612 25 6 6.9462 -12.6720 -3.1495 26 7 3.7639 -11.2733 -3.3468 27 7 3.2443 -10.2047 -2.8504 28 6 1.9319 -3.7274 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5992 -1.7592 -0.6154 31 1 -0.5291 -2.4858 1.0183 32 1 -1.3590 -4.3329 -0.2771 33 1 -0.3526 -3.8988 -1.6991 34 1 0.2302 -6.5349 -1.1056 35 1 1.4915 -5.5567 -1.8933 36 1 3.0947 -6.1878 -0.1100 37 1 1.8334 -7.1660 0.6777 38 1 2.0796 -8.0215 -2.0028 39 1 5.3381 -11.0007 -0.5050 40 1 5.0223 -13.7647 -3.1348 41 1 6.3726 -12.6244 -0.5834 42 1 5.7648 -14.3133 -0.8648 43 1 7.4743 -14.7410 -2.5696 44 1 8.4029 -13.4571 -1.6805 45 1 7.0761 -12.9506 -4.1952 46 1 7.2970 -11.6627 -2.9336 47 1 2.5584 -3.8515 -0.8817 48 1 2.5281 -3.8639 0.9038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267559318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:40 Heat of formation + Delta-G solvation = 77.091379 kcal Electronic energy + Delta-G solvation = -27390.396457 eV Core-core repulsion = 23482.722980 eV Total energy + Delta-G solvation = -3907.673477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.34902 -40.59036 -39.70840 -39.33739 -36.48945 -34.80674 -34.14287 -32.65578 -31.89238 -30.63341 -28.29915 -27.12722 -26.82626 -26.48420 -24.72409 -23.43235 -23.22807 -21.95799 -21.65000 -20.79833 -20.51995 -19.30656 -18.87484 -17.51216 -17.24137 -17.09619 -16.93232 -16.60762 -16.44214 -15.94951 -15.75426 -15.56291 -15.08176 -14.78659 -14.24819 -14.17253 -13.78846 -13.77424 -13.52543 -13.49895 -13.33543 -13.26399 -13.07977 -12.93114 -12.81035 -12.69381 -12.22967 -12.06072 -11.96594 -11.86137 -11.77023 -11.61604 -11.50936 -11.41188 -11.29220 -11.14912 -11.11899 -10.73739 -10.45458 -10.05127 -8.85911 -7.76461 -5.20508 0.09183 0.57188 1.03773 1.45759 1.46940 1.57447 2.09219 2.19892 2.50093 3.06089 3.14908 3.32524 3.37142 3.61176 3.73561 3.75044 3.75741 3.78680 3.87867 3.95339 4.14024 4.19452 4.33181 4.38184 4.45130 4.58805 4.64665 4.67060 4.72756 4.75277 4.77859 4.89913 4.91653 4.93531 5.05391 5.05745 5.12945 5.20302 5.27185 5.27681 5.39058 5.45827 5.50051 5.54021 5.71145 5.85311 6.33768 6.39554 6.86669 7.10282 7.12954 7.81110 8.45126 9.25472 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.001724 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.247936 B =16238.088682 C =16759.685964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.123 4.123 12 C -0.083 4.083 13 H 0.082 0.918 14 C -0.102 4.102 15 C 0.125 3.875 16 N -0.705 5.705 17 C 0.602 3.398 18 O -0.570 6.570 19 C -0.122 4.122 20 C 0.106 3.894 21 N -0.336 5.336 22 C 0.105 3.895 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.147 4.147 26 N -0.089 5.089 27 N -0.224 5.224 28 C 0.133 3.867 29 H 0.247 0.753 30 H 0.070 0.930 31 H -0.016 1.016 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.229 0.771 40 H 0.147 0.853 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.065 -33.860 -5.449 36.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.161 4.161 12 C -0.102 4.102 13 H 0.101 0.899 14 C -0.140 4.140 15 C 0.001 3.999 16 N -0.356 5.356 17 C 0.387 3.613 18 O -0.449 6.449 19 C -0.262 4.262 20 C -0.052 4.052 21 N -0.121 5.121 22 C 0.005 3.995 23 C -0.181 4.181 24 C -0.162 4.162 25 C -0.186 4.186 26 N -0.069 5.069 27 N -0.097 5.097 28 C 0.008 3.992 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.002 0.998 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.245 0.755 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.043 0.957 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 11.766 -33.804 -6.077 36.306 hybrid contribution 0.514 1.469 0.656 1.689 sum 12.279 -32.335 -5.421 35.011 Atomic orbital electron populations 1.70074 1.06156 1.24878 1.58780 1.25647 0.96708 1.00983 1.02879 0.84976 0.78009 0.79330 0.76816 1.19277 1.21615 1.21870 1.19505 0.90960 0.84042 1.42292 0.90468 1.44868 1.02937 1.01028 1.86683 1.21751 0.83961 0.95451 0.96406 1.22886 0.97998 0.95241 1.00019 1.22013 0.94767 0.93683 0.99752 0.89918 1.21642 0.98757 0.95150 0.98464 1.21401 0.98488 0.86360 0.93620 1.45776 1.40183 1.25886 1.23735 1.16949 0.79269 0.80817 0.84250 1.90797 1.53837 1.76337 1.23970 1.21427 1.05513 1.02755 0.96546 1.23624 0.98009 0.88982 0.94566 1.50884 1.27816 1.20483 1.12877 1.24049 0.89374 0.83453 1.02636 1.23566 0.96301 1.03377 0.94841 1.22741 0.97845 0.99664 0.95938 1.23471 0.92190 1.01060 1.01890 1.81913 1.03963 1.07181 1.13805 1.74605 1.19210 1.08434 1.07415 1.21590 0.95241 0.84952 0.97371 0.94366 0.91159 0.99758 0.89583 0.91610 0.88668 0.91039 0.92494 0.90998 0.74768 0.75470 0.83563 0.88360 0.87963 0.87505 0.89113 0.89231 0.90092 0.95694 0.96695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 10.09 21.65 0.22 -57.91 16 2 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 3 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -33.83 3.39 -691.88 -2.35 -36.17 16 10 C 0.15 7.58 5.89 86.86 0.51 8.09 16 11 C -0.12 -4.50 6.53 31.99 0.21 -4.29 16 12 C -0.08 -2.71 2.93 -9.58 -0.03 -2.74 16 13 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16 14 C -0.10 -2.52 4.73 30.60 0.14 -2.37 16 15 C 0.12 3.16 5.56 86.38 0.48 3.64 16 16 N -0.71 -16.76 5.55 -466.27 -2.59 -19.35 16 17 C 0.60 15.78 7.82 86.69 0.68 16.46 16 18 O -0.57 -17.92 16.86 -4.01 -0.07 -17.99 16 19 C -0.12 -2.75 6.99 40.82 0.29 -2.47 16 20 C 0.11 1.70 10.49 83.85 0.88 2.58 16 21 N -0.34 -4.91 3.83 -324.04 -1.24 -6.15 16 22 C 0.10 0.66 5.05 45.52 0.23 0.89 16 23 C -0.14 -0.26 7.47 31.18 0.23 -0.03 16 24 C -0.12 -0.05 8.09 31.18 0.25 0.20 16 25 C -0.15 -0.70 7.88 31.12 0.25 -0.45 16 26 N -0.09 -1.94 13.79 37.02 0.51 -1.43 16 27 N -0.22 -5.36 12.04 -49.99 -0.60 -5.97 16 28 C 0.13 5.69 6.24 86.75 0.54 6.23 16 29 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.07 4.06 5.88 -2.39 -0.01 4.05 16 31 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.82 7.94 -2.38 -0.02 1.80 16 36 H 0.06 1.66 7.69 -2.38 -0.02 1.64 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.42 8.58 8.16 -92.71 -0.76 7.82 16 39 H 0.23 2.21 6.79 -2.91 -0.02 2.19 16 40 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.18 6.39 -2.39 -0.02 0.17 16 42 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.03 1.05 7.68 -2.39 -0.02 1.03 16 48 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -77.71 390.25 2.11 -75.60 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.21 Total: 11.25 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.99 Total: 8.98 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.05 Total: -126.98 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.07 Total: -17.99 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.71 2.11 -75.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267559318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.690 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds