Wall clock time and date at job start Tue Mar 31 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 C 1.53001 * 109.47357 * 181.33347 * 14 12 11 16 16 N 1.46494 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99883 * 179.97438 * 16 15 14 18 18 O 1.21588 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.47523 * 119.99790 * 180.02562 * 17 16 15 20 20 C 1.36598 * 125.76774 * 179.97438 * 19 17 16 21 21 N 1.34814 * 106.83828 * 179.97438 * 20 19 17 22 22 C 1.46501 * 126.59366 * 179.97438 * 21 20 19 23 23 C 1.53779 * 113.61420 * 14.13267 * 22 21 20 24 24 C 1.53951 * 87.01882 * 220.04925 * 23 22 21 25 25 C 1.53779 * 113.61020 * 276.52458 * 22 21 20 26 26 N 1.40212 * 106.81154 * 359.97438 * 21 20 19 27 27 N 1.28756 * 108.36623 * 359.75285 * 26 21 20 28 28 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 29 29 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 31 31 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 32 32 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 33 33 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 34 34 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 35 35 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 36 36 H 1.09003 * 109.46648 * 299.99860 * 15 14 12 37 37 H 1.09000 * 109.47215 * 59.98952 * 15 14 12 38 38 H 0.97001 * 120.00138 * 359.97438 * 16 15 14 39 39 H 1.08003 * 126.58141 * 359.97438 * 20 19 17 40 40 H 1.09004 * 112.85168 * 145.32849 * 22 21 20 41 41 H 1.08995 * 113.61811 * 334.56865 * 23 22 21 42 42 H 1.09004 * 113.61470 * 105.47392 * 23 22 21 43 43 H 1.08997 * 113.54271 * 270.81221 * 24 23 22 44 44 H 1.09005 * 113.74655 * 139.94148 * 24 23 22 45 45 H 1.08998 * 113.61848 * 254.52577 * 25 22 21 46 46 H 1.08999 * 113.61778 * 25.35278 * 25 22 21 47 47 H 1.09002 * 110.36696 * 85.26297 * 28 9 7 48 48 H 1.08995 * 110.36608 * 323.05133 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 6 2.3499 -6.6563 -0.7156 16 7 2.5305 -8.0395 -0.2681 17 6 3.6207 -8.7342 -0.6493 18 8 4.4540 -8.2131 -1.3651 19 6 3.8022 -10.1273 -0.1991 20 6 4.8566 -10.9369 -0.5132 21 7 4.6365 -12.1190 0.0965 22 6 5.5004 -13.3012 0.0475 23 6 6.9087 -13.0127 -0.4987 24 6 6.8054 -14.3538 -1.2477 25 6 5.2788 -14.1747 -1.1985 26 7 3.4218 -11.9994 0.7865 27 7 2.9615 -10.8123 0.5948 28 6 1.9335 -3.7312 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5607 -2.0564 -0.8839 31 1 -0.5599 -2.0893 0.9002 32 1 -1.2974 -4.2573 -0.6785 33 1 -0.6320 -4.4259 0.9776 34 1 1.0793 -6.1306 0.9428 35 1 0.2074 -6.7095 -0.4969 36 1 2.3127 -6.6282 -1.8046 37 1 3.1846 -6.0493 -0.3649 38 1 1.8654 -8.4553 0.3027 39 1 5.7040 -10.6795 -1.1313 40 1 5.5010 -13.8640 0.9810 41 1 6.9522 -12.1463 -1.1585 42 1 7.6811 -12.9995 0.2704 43 1 7.1641 -15.2047 -0.6686 44 1 7.2160 -14.3255 -2.2571 45 1 4.7373 -15.0982 -0.9937 46 1 4.8745 -13.6268 -2.0497 47 1 2.1668 -4.0420 1.0178 48 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267559319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:44 Heat of formation + Delta-G solvation = 99.564507 kcal Electronic energy + Delta-G solvation = -27378.412584 eV Core-core repulsion = 23471.713615 eV Total energy + Delta-G solvation = -3906.698969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62447 -39.72456 -39.18808 -37.71224 -35.20155 -33.60467 -32.89889 -31.44454 -30.57742 -28.93575 -27.00230 -26.60005 -26.28188 -24.81529 -23.60224 -22.78046 -22.10757 -20.74742 -20.23049 -19.91895 -19.49195 -18.55482 -16.83683 -16.74237 -16.61484 -16.07817 -15.95571 -15.47152 -15.08478 -14.75641 -14.51323 -14.24561 -13.85152 -13.63896 -13.52180 -13.36691 -13.22950 -12.67521 -12.39430 -12.38908 -12.20146 -11.88492 -11.77233 -11.62609 -11.53454 -11.47996 -11.24551 -11.02026 -10.81059 -10.72639 -10.62876 -10.30614 -10.05975 -9.89574 -9.78584 -9.69503 -9.61760 -9.55281 -9.03094 -8.53438 -6.74066 -5.64013 -2.96590 0.78844 1.46794 1.60777 3.04556 3.16291 3.40555 3.44670 3.50141 3.52707 3.60421 3.90045 3.90628 3.94775 4.35470 4.49912 4.56605 4.68227 4.77042 4.83646 4.95546 4.99502 5.06838 5.13907 5.16453 5.18925 5.35423 5.41955 5.53907 5.55184 5.68888 5.74541 5.82567 5.94634 6.00441 6.10084 6.20439 6.29117 6.43533 6.47573 6.63604 6.67793 6.81575 7.06011 7.36061 7.64632 7.67903 7.71373 7.90536 8.09678 8.33862 9.29928 9.90740 10.57882 11.48139 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.001708 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.451249 B =16393.133746 C =17072.784354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.118 3.882 16 N -0.712 5.712 17 C 0.602 3.398 18 O -0.539 6.539 19 C -0.099 4.099 20 C 0.092 3.908 21 N -0.351 5.351 22 C 0.121 3.879 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.145 4.145 26 N -0.066 5.066 27 N -0.206 5.206 28 C 0.139 3.861 29 H 0.250 0.750 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.202 0.798 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.017 0.983 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.815 -32.408 -1.735 34.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.005 4.005 16 N -0.362 5.362 17 C 0.385 3.615 18 O -0.415 6.415 19 C -0.239 4.239 20 C -0.064 4.064 21 N -0.135 5.135 22 C 0.019 3.981 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.184 4.184 26 N -0.045 5.045 27 N -0.079 5.079 28 C 0.013 3.987 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.242 0.758 39 H 0.219 0.781 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.035 0.965 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.356 -32.498 -1.330 34.134 hybrid contribution 0.839 1.072 -0.262 1.386 sum 11.195 -31.427 -1.593 33.399 Atomic orbital electron populations 1.69981 1.04855 1.24758 1.57519 1.24799 0.95724 0.97627 1.02560 0.86053 0.78740 0.83886 0.77170 1.20522 1.21826 1.21839 1.19130 0.90472 0.82502 1.43165 0.90418 1.44555 1.01732 0.99959 1.87101 1.21169 0.84340 0.88408 1.00908 1.22894 0.95941 0.99404 0.99418 1.22266 0.97630 0.91937 1.00158 0.90579 1.21749 0.95760 0.96772 1.01225 1.21563 0.99004 0.80095 0.99829 1.45870 1.23477 1.14779 1.52112 1.16741 0.81987 0.82784 0.79981 1.90825 1.43324 1.69645 1.37742 1.21521 0.96311 0.98289 1.07733 1.23246 1.00555 0.85234 0.97412 1.50580 1.17898 1.11045 1.33998 1.23472 0.89058 0.83989 1.01544 1.23517 0.94466 0.99738 1.00893 1.22745 0.95421 0.97109 1.02065 1.23451 0.97804 1.00357 0.96780 1.81989 0.94010 1.12228 1.16286 1.74636 1.23093 0.99565 1.10632 1.21615 0.94339 0.86102 0.96657 0.93920 0.93718 0.94116 0.92359 0.92536 0.91176 0.91527 0.91143 0.90621 0.75753 0.78083 0.84763 0.88473 0.89200 0.88951 0.89647 0.89556 0.88941 0.96488 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 10.33 55.49 0.57 -27.25 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.22 -6.46 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.61 -16.00 3.40 -169.86 -0.58 -16.58 16 10 C 0.18 4.39 5.38 -2.92 -0.02 4.38 16 11 C -0.14 -2.58 6.42 -24.90 -0.16 -2.74 16 12 C -0.10 -1.72 3.07 -88.47 -0.27 -1.99 16 13 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 14 C -0.12 -1.54 4.85 -26.73 -0.13 -1.67 16 15 C 0.12 1.57 5.52 -4.04 -0.02 1.55 16 16 N -0.71 -8.76 5.55 -61.35 -0.34 -9.10 16 17 C 0.60 8.05 7.82 -12.47 -0.10 7.95 16 18 O -0.54 -8.63 16.86 5.29 0.09 -8.54 16 19 C -0.10 -1.14 6.99 -83.55 -0.58 -1.73 16 20 C 0.09 0.80 10.49 -16.83 -0.18 0.62 16 21 N -0.35 -2.78 3.83 -53.77 -0.21 -2.99 16 22 C 0.12 0.50 5.05 -67.12 -0.34 0.16 16 23 C -0.15 -0.34 7.47 -25.83 -0.19 -0.53 16 24 C -0.14 -0.20 8.09 -25.83 -0.21 -0.40 16 25 C -0.15 -0.44 7.88 -25.92 -0.20 -0.64 16 26 N -0.07 -0.73 13.78 60.35 0.83 0.10 16 27 N -0.21 -2.49 12.04 32.85 0.40 -2.10 16 28 C 0.14 2.93 5.89 -2.53 -0.01 2.91 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 1.23 7.39 -51.93 -0.38 0.84 16 31 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.12 7.45 -51.93 -0.39 0.73 16 38 H 0.41 4.38 8.16 -40.82 -0.33 4.05 16 39 H 0.20 1.19 6.78 -52.48 -0.36 0.83 16 40 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.22 6.39 -51.93 -0.33 -0.11 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 44 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 48 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -35.24 390.81 -8.66 -43.90 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.63 Total: -1.84 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.67 Total: 0.83 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.68 Total: -57.91 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.24 -8.66 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267559319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.469 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds