Wall clock time and date at job start Tue Mar 31 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 C 1.53001 * 109.47357 * 181.33347 * 14 12 11 16 16 N 1.46494 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99883 * 179.97438 * 16 15 14 18 18 O 1.21588 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.47523 * 119.99790 * 180.02562 * 17 16 15 20 20 C 1.36598 * 125.76774 * 179.97438 * 19 17 16 21 21 N 1.34814 * 106.83828 * 179.97438 * 20 19 17 22 22 C 1.46501 * 126.59366 * 179.97438 * 21 20 19 23 23 C 1.53779 * 113.61420 * 14.13267 * 22 21 20 24 24 C 1.53951 * 87.01882 * 220.04925 * 23 22 21 25 25 C 1.53779 * 113.61020 * 276.52458 * 22 21 20 26 26 N 1.40212 * 106.81154 * 359.97438 * 21 20 19 27 27 N 1.28756 * 108.36623 * 359.75285 * 26 21 20 28 28 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 29 29 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 31 31 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 32 32 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 33 33 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 34 34 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 35 35 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 36 36 H 1.09003 * 109.46648 * 299.99860 * 15 14 12 37 37 H 1.09000 * 109.47215 * 59.98952 * 15 14 12 38 38 H 0.97001 * 120.00138 * 359.97438 * 16 15 14 39 39 H 1.08003 * 126.58141 * 359.97438 * 20 19 17 40 40 H 1.09004 * 112.85168 * 145.32849 * 22 21 20 41 41 H 1.08995 * 113.61811 * 334.56865 * 23 22 21 42 42 H 1.09004 * 113.61470 * 105.47392 * 23 22 21 43 43 H 1.08997 * 113.54271 * 270.81221 * 24 23 22 44 44 H 1.09005 * 113.74655 * 139.94148 * 24 23 22 45 45 H 1.08998 * 113.61848 * 254.52577 * 25 22 21 46 46 H 1.08999 * 113.61778 * 25.35278 * 25 22 21 47 47 H 1.09002 * 110.36696 * 85.26297 * 28 9 7 48 48 H 1.08995 * 110.36608 * 323.05133 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 6 2.3499 -6.6563 -0.7156 16 7 2.5305 -8.0395 -0.2681 17 6 3.6207 -8.7342 -0.6493 18 8 4.4540 -8.2131 -1.3651 19 6 3.8022 -10.1273 -0.1991 20 6 4.8566 -10.9369 -0.5132 21 7 4.6365 -12.1190 0.0965 22 6 5.5004 -13.3012 0.0475 23 6 6.9087 -13.0127 -0.4987 24 6 6.8054 -14.3538 -1.2477 25 6 5.2788 -14.1747 -1.1985 26 7 3.4218 -11.9994 0.7865 27 7 2.9615 -10.8123 0.5948 28 6 1.9335 -3.7312 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5607 -2.0564 -0.8839 31 1 -0.5599 -2.0893 0.9002 32 1 -1.2974 -4.2573 -0.6785 33 1 -0.6320 -4.4259 0.9776 34 1 1.0793 -6.1306 0.9428 35 1 0.2074 -6.7095 -0.4969 36 1 2.3127 -6.6282 -1.8046 37 1 3.1846 -6.0493 -0.3649 38 1 1.8654 -8.4553 0.3027 39 1 5.7040 -10.6795 -1.1313 40 1 5.5010 -13.8640 0.9810 41 1 6.9522 -12.1463 -1.1585 42 1 7.6811 -12.9995 0.2704 43 1 7.1641 -15.2047 -0.6686 44 1 7.2160 -14.3255 -2.2571 45 1 4.7373 -15.0982 -0.9937 46 1 4.8745 -13.6268 -2.0497 47 1 2.1668 -4.0420 1.0178 48 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267559319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:43 Heat of formation + Delta-G solvation = 75.415290 kcal Electronic energy + Delta-G solvation = -27379.459772 eV Core-core repulsion = 23471.713615 eV Total energy + Delta-G solvation = -3907.746158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.34463 -40.58214 -39.70287 -39.32063 -36.47479 -34.78703 -34.13758 -32.65543 -31.88631 -30.65363 -28.27929 -27.12030 -26.82221 -26.48422 -24.72854 -23.44517 -23.24473 -21.86285 -21.65096 -20.86823 -20.52527 -19.30715 -18.84316 -17.49148 -17.23929 -17.04265 -16.90296 -16.58310 -16.38764 -15.99107 -15.74986 -15.54231 -15.07261 -14.94341 -14.16375 -14.08746 -13.83084 -13.77449 -13.65511 -13.51206 -13.32362 -13.24001 -13.06644 -12.91253 -12.80699 -12.65682 -12.22382 -12.06213 -11.96604 -11.85592 -11.77633 -11.62079 -11.50283 -11.37468 -11.30409 -11.17353 -11.14093 -10.70642 -10.44783 -10.03943 -8.87000 -7.84224 -5.19093 0.09687 0.57939 1.04123 1.44962 1.46272 1.56840 2.10027 2.20582 2.50193 3.06462 3.15415 3.33829 3.37548 3.61474 3.68205 3.74332 3.75504 3.81968 3.88678 4.00962 4.14518 4.17225 4.34483 4.40005 4.45666 4.59332 4.64184 4.66047 4.72547 4.75824 4.79192 4.90154 4.92962 4.94190 5.02321 5.06125 5.14763 5.18451 5.27434 5.27718 5.39942 5.46564 5.50416 5.55139 5.72107 5.80866 6.22058 6.40765 6.87462 7.11547 7.12128 7.80137 8.45334 9.26670 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.001708 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.451249 B =16393.133746 C =17072.784354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.631 5.631 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.084 4.084 13 H 0.076 0.924 14 C -0.101 4.101 15 C 0.124 3.876 16 N -0.705 5.705 17 C 0.602 3.398 18 O -0.571 6.571 19 C -0.122 4.122 20 C 0.106 3.894 21 N -0.337 5.337 22 C 0.104 3.896 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.145 4.145 26 N -0.089 5.089 27 N -0.223 5.223 28 C 0.133 3.867 29 H 0.246 0.754 30 H 0.008 0.992 31 H 0.003 0.997 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.228 0.772 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.023 0.977 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.184 -34.873 -1.887 36.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.357 5.357 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.139 4.139 15 C 0.000 4.000 16 N -0.355 5.355 17 C 0.387 3.613 18 O -0.450 6.450 19 C -0.262 4.262 20 C -0.052 4.052 21 N -0.121 5.121 22 C 0.004 3.996 23 C -0.182 4.182 24 C -0.162 4.162 25 C -0.184 4.184 26 N -0.068 5.068 27 N -0.096 5.096 28 C 0.008 3.992 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.021 0.979 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.245 0.755 40 H 0.163 0.837 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.041 0.959 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.727 -35.034 -1.457 36.973 hybrid contribution 0.485 1.744 -0.214 1.823 sum 12.213 -33.290 -1.671 35.499 Atomic orbital electron populations 1.70206 1.06278 1.25107 1.58567 1.25673 0.96681 1.01063 1.02842 0.85000 0.78144 0.79397 0.76754 1.19059 1.21803 1.21838 1.19523 0.90976 0.83980 1.42596 0.90197 1.44906 1.02639 1.01260 1.86941 1.20980 0.83620 0.92439 0.97396 1.22762 0.97486 0.94580 1.01312 1.22141 0.94885 0.93468 0.99880 0.90582 1.21595 0.96600 0.94090 1.01629 1.21390 0.98461 0.80475 0.99637 1.45762 1.23538 1.14271 1.51935 1.16957 0.81595 0.83403 0.79378 1.90801 1.44380 1.70526 1.39283 1.21419 0.97710 0.97892 1.09174 1.23623 1.00253 0.84793 0.96565 1.50878 1.17077 1.11707 1.32406 1.24046 0.89595 0.83182 1.02730 1.23568 0.93201 1.00304 1.01139 1.22739 0.93843 0.97074 1.02536 1.23461 0.99240 1.00041 0.95665 1.81905 0.95550 1.11970 1.17406 1.74595 1.23805 1.00020 1.11165 1.21827 0.95469 0.84693 0.97199 0.94471 0.97345 0.97859 0.89941 0.90745 0.90393 0.88715 0.91405 0.92347 0.74706 0.75535 0.83654 0.88353 0.88141 0.87575 0.89060 0.89154 0.89946 0.95942 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.34 10.33 21.65 0.22 -59.12 16 2 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 3 Si 0.98 47.46 29.55 68.60 2.03 49.48 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.24 -14.18 10.28 84.03 0.86 -13.32 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -33.88 3.40 -691.30 -2.35 -36.23 16 10 C 0.18 9.22 5.38 86.68 0.47 9.69 16 11 C -0.12 -4.42 6.42 31.78 0.20 -4.22 16 12 C -0.08 -2.73 3.07 -9.40 -0.03 -2.76 16 13 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 14 C -0.10 -2.38 4.85 30.59 0.15 -2.24 16 15 C 0.12 3.11 5.52 86.38 0.48 3.59 16 16 N -0.70 -16.39 5.55 -466.29 -2.59 -18.98 16 17 C 0.60 15.65 7.82 86.69 0.68 16.33 16 18 O -0.57 -18.01 16.86 -3.99 -0.07 -18.08 16 19 C -0.12 -2.71 6.99 40.82 0.29 -2.43 16 20 C 0.11 1.68 10.49 83.85 0.88 2.56 16 21 N -0.34 -4.84 3.83 -324.04 -1.24 -6.08 16 22 C 0.10 0.65 5.05 45.52 0.23 0.88 16 23 C -0.14 -0.28 7.47 31.18 0.23 -0.05 16 24 C -0.12 -0.02 8.09 31.18 0.25 0.23 16 25 C -0.15 -0.60 7.88 31.12 0.25 -0.36 16 26 N -0.09 -1.90 13.78 37.02 0.51 -1.39 16 27 N -0.22 -5.24 12.04 -49.99 -0.60 -5.84 16 28 C 0.13 5.56 5.89 86.86 0.51 6.07 16 29 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.01 0.48 7.39 -2.38 -0.02 0.46 16 31 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 34 H 0.08 1.78 8.10 -2.38 -0.02 1.76 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.69 7.45 -2.39 -0.02 1.67 16 38 H 0.42 8.24 8.16 -92.71 -0.76 7.48 16 39 H 0.23 2.21 6.78 -2.91 -0.02 2.19 16 40 H 0.15 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.10 0.19 6.39 -2.39 -0.02 0.18 16 42 H 0.10 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 48 H 0.04 1.50 8.06 -2.39 -0.02 1.48 16 Total: -1.00 -79.14 390.81 2.03 -77.11 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.21 Total: 8.84 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.91 Total: 10.29 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -6.05 Total: -127.64 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.07 Total: -18.08 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -79.14 2.03 -77.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267559319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.528 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds