Wall clock time and date at job start Tue Mar 31 2020 18:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.88641 * 302.57245 * 12 11 10 14 14 C 1.55158 * 111.00281 * 178.65123 * 12 11 10 15 15 C 1.54325 * 102.94392 * 206.42263 * 14 12 11 16 16 N 1.47025 * 107.26722 * 22.19606 * 15 14 12 17 17 C 1.34779 * 125.64744 * 181.02504 * 16 15 14 18 18 O 1.21596 * 120.00070 * 180.02562 * 17 16 15 19 19 C 1.47528 * 119.99865 * 0.04007 * 17 16 15 20 20 C 1.36590 * 125.77098 * 180.02562 * 19 17 16 21 21 N 1.34816 * 106.84376 * 179.97438 * 20 19 17 22 22 C 1.46490 * 126.60021 * 179.97438 * 21 20 19 23 23 C 1.53785 * 113.61219 * 14.13885 * 22 21 20 24 24 C 1.53954 * 87.02003 * 220.04803 * 23 22 21 25 25 C 1.53776 * 113.61686 * 276.53312 * 22 21 20 26 26 N 1.40217 * 106.80517 * 0.02562 * 21 20 19 27 27 N 1.28761 * 108.37149 * 359.74419 * 26 21 20 28 28 C 1.47416 * 108.70404 * 1.05390 * 16 15 14 29 29 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 31 31 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 32 32 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 33 33 H 1.09000 * 109.46986 * 299.99958 * 11 10 9 34 34 H 1.09002 * 109.46857 * 60.00093 * 11 10 9 35 35 H 1.09000 * 110.72381 * 324.79112 * 14 12 11 36 36 H 1.09003 * 110.71803 * 88.05936 * 14 12 11 37 37 H 1.08999 * 109.88240 * 262.77606 * 15 14 12 38 38 H 1.08997 * 110.01151 * 141.68208 * 15 14 12 39 39 H 1.07999 * 126.58069 * 359.95404 * 20 19 17 40 40 H 1.09000 * 112.85418 * 145.33299 * 22 21 20 41 41 H 1.08998 * 113.61756 * 334.56829 * 23 22 21 42 42 H 1.09005 * 113.61411 * 105.46914 * 23 22 21 43 43 H 1.09004 * 113.53673 * 270.81322 * 24 23 22 44 44 H 1.08998 * 113.74284 * 139.94606 * 24 23 22 45 45 H 1.08994 * 113.61744 * 254.52712 * 25 22 21 46 46 H 1.09011 * 113.61417 * 25.34496 * 25 22 21 47 47 H 1.09001 * 110.36817 * 217.03349 * 28 16 15 48 48 H 1.09001 * 110.45891 * 94.76215 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 6 1.8292 -6.1446 0.0058 13 1 2.4945 -6.2088 -0.8553 14 6 0.8535 -7.3503 0.0469 15 6 1.6995 -8.4572 0.7107 16 7 2.7697 -7.7929 1.4690 17 6 3.7339 -8.4149 2.1760 18 8 4.5716 -7.7615 2.7675 19 6 3.7731 -9.8886 2.2321 20 6 4.6925 -10.6377 2.9098 21 7 4.3717 -11.9307 2.7033 22 6 5.0760 -13.1008 3.2333 23 6 6.0638 -12.7655 4.3633 24 6 7.0182 -13.7906 3.7241 25 6 6.2953 -13.5181 2.3944 26 7 3.2348 -11.9402 1.8826 27 7 2.9072 -10.7211 1.6290 28 6 2.6131 -6.3339 1.3284 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0039 31 1 2.6812 -3.7165 -0.8930 32 1 2.6887 -3.7123 0.8869 33 1 0.4412 -4.7598 0.8989 34 1 0.4338 -4.7641 -0.8811 35 1 -0.0217 -7.1177 0.6535 36 1 0.5588 -7.6424 -0.9611 37 1 2.1322 -9.1020 -0.0541 38 1 1.0788 -9.0472 1.3850 39 1 5.5183 -10.2656 3.4980 40 1 4.4056 -13.9269 3.4703 41 1 6.4359 -11.7416 4.3285 42 1 5.7098 -13.0549 5.3528 43 1 6.8795 -14.8057 4.0964 44 1 8.0625 -13.4783 3.7254 45 1 6.1281 -14.4141 1.7968 46 1 6.7300 -12.7006 1.8191 47 1 3.5888 -5.8521 1.2634 48 1 2.0461 -5.9290 2.1666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272441351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:18 Heat of formation + Delta-G solvation = 95.560843 kcal Electronic energy + Delta-G solvation = -27682.656807 eV Core-core repulsion = 23775.784226 eV Total energy + Delta-G solvation = -3906.872581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.61928 -39.99155 -39.34392 -37.69333 -35.08458 -33.63441 -32.83308 -31.34893 -30.79488 -29.40902 -27.43921 -26.61089 -26.38114 -24.76636 -23.31023 -22.79488 -22.51359 -21.17881 -20.25023 -20.19327 -19.79508 -18.15753 -17.04828 -16.78889 -16.64175 -16.23417 -15.96804 -15.42566 -15.07739 -14.79782 -14.56229 -13.93535 -13.81863 -13.47858 -13.40729 -13.30253 -13.24889 -13.01353 -12.82373 -12.69801 -12.58164 -12.36036 -12.07095 -11.62896 -11.59282 -11.49705 -11.28357 -11.12076 -10.97591 -10.78100 -10.62237 -10.54903 -10.38182 -10.27799 -10.17787 -9.92224 -9.61130 -9.58786 -8.80467 -8.62758 -6.85052 -5.70423 -2.98636 0.79449 1.48874 1.61781 2.86736 3.14989 3.39021 3.48387 3.53295 3.55312 3.60885 3.89270 3.91272 3.95043 4.22442 4.50533 4.57892 4.62724 4.68163 4.76312 4.78828 4.84190 4.94126 4.96320 5.06929 5.14179 5.16349 5.30143 5.33754 5.46822 5.53983 5.60182 5.64215 5.74495 5.82588 5.92485 5.99080 6.00618 6.01622 6.19612 6.24741 6.33567 6.44277 6.48867 6.92293 6.96380 7.41862 7.62940 7.76559 8.04899 8.48905 9.59777 10.18737 10.53243 11.52631 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.001806 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.419353 B =15497.974861 C =16285.854654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.130 4.130 15 C 0.110 3.890 16 N -0.603 5.603 17 C 0.615 3.385 18 O -0.540 6.540 19 C -0.094 4.094 20 C 0.092 3.908 21 N -0.350 5.350 22 C 0.121 3.879 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.145 4.145 26 N -0.069 5.069 27 N -0.202 5.202 28 C 0.111 3.889 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.202 0.798 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.769 -33.789 7.010 36.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.152 4.152 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.168 4.168 15 C -0.013 4.013 16 N -0.335 5.335 17 C 0.401 3.599 18 O -0.417 6.417 19 C -0.234 4.234 20 C -0.065 4.065 21 N -0.135 5.135 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.184 4.184 26 N -0.048 5.048 27 N -0.075 5.075 28 C -0.010 4.010 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.376 -34.266 6.661 36.416 hybrid contribution 0.833 1.349 0.532 1.673 sum 11.209 -32.916 7.193 35.509 Atomic orbital electron populations 1.69661 1.05089 1.25553 1.58072 1.24737 0.95536 0.97674 1.03213 0.86186 0.78669 0.83865 0.77477 1.21772 1.21800 1.20766 1.19258 0.91074 0.84246 1.42280 0.91188 1.42373 1.05872 1.00097 1.89484 1.20695 0.93600 0.85572 0.97847 1.21682 0.98544 0.92442 1.02571 1.22344 0.96916 0.95038 0.97092 0.89671 1.22777 0.98136 0.94402 1.01516 1.22104 0.88580 0.95192 0.95413 1.48264 1.28016 1.08303 1.48921 1.16343 0.80693 0.83962 0.78917 1.90828 1.39234 1.65712 1.45959 1.21403 0.98677 0.95593 1.07696 1.23212 1.00484 0.83554 0.99210 1.50569 1.21870 1.06129 1.34927 1.23459 0.92212 0.86201 0.96163 1.23517 0.95416 1.01605 0.98080 1.22744 0.99600 0.99712 0.95281 1.23449 0.94236 1.03076 0.97630 1.81995 0.98863 1.13753 1.10199 1.74748 1.20304 0.96854 1.15602 1.22452 1.01638 0.78965 0.97988 0.93591 0.78332 0.96437 0.96231 0.91567 0.91268 0.90291 0.89893 0.90874 0.90941 0.78127 0.84789 0.88488 0.89227 0.88960 0.89650 0.89563 0.88942 0.89856 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.17 5.60 -59.91 -0.34 -19.50 16 10 C 0.15 3.08 6.11 -4.04 -0.02 3.06 16 11 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 12 C -0.09 -1.22 3.07 -88.47 -0.27 -1.50 16 13 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.13 -1.40 6.42 -24.90 -0.16 -1.56 16 15 C 0.11 1.25 5.52 -3.06 -0.02 1.24 16 16 N -0.60 -8.20 3.33 -171.75 -0.57 -8.77 16 17 C 0.61 8.84 7.85 -12.47 -0.10 8.75 16 18 O -0.54 -9.12 17.12 5.28 0.09 -9.03 16 19 C -0.09 -1.14 6.85 -83.55 -0.57 -1.71 16 20 C 0.09 0.83 10.49 -16.84 -0.18 0.65 16 21 N -0.35 -2.82 3.83 -53.78 -0.21 -3.03 16 22 C 0.12 0.51 5.05 -67.12 -0.34 0.17 16 23 C -0.15 -0.35 7.47 -25.83 -0.19 -0.54 16 24 C -0.14 -0.21 8.09 -25.83 -0.21 -0.42 16 25 C -0.15 -0.46 7.88 -25.92 -0.20 -0.67 16 26 N -0.07 -0.77 13.78 60.35 0.83 0.07 16 27 N -0.20 -2.47 9.78 32.85 0.32 -2.15 16 28 C 0.11 1.57 5.57 -2.54 -0.01 1.56 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.42 7.67 -40.82 -0.31 10.10 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.82 7.62 -51.93 -0.40 0.43 16 38 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 39 H 0.20 1.26 6.78 -52.49 -0.36 0.90 16 40 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.24 6.39 -51.93 -0.33 -0.09 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 43 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 47 H 0.08 1.28 7.96 -51.93 -0.41 0.86 16 48 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -35.50 391.36 -8.55 -44.05 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.63 Total: 3.17 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.65 Total: -0.50 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.76 Total: -61.52 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.50 -8.55 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272441351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.607 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds