Wall clock time and date at job start Tue Mar 31 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.88641 * 302.57245 * 12 11 10 14 14 C 1.55158 * 111.00281 * 178.65123 * 12 11 10 15 15 C 1.54325 * 102.94392 * 206.42263 * 14 12 11 16 16 N 1.47025 * 107.26722 * 22.19606 * 15 14 12 17 17 C 1.34779 * 125.64744 * 181.02504 * 16 15 14 18 18 O 1.21596 * 120.00070 * 180.02562 * 17 16 15 19 19 C 1.47528 * 119.99865 * 0.04007 * 17 16 15 20 20 C 1.36590 * 125.77098 * 180.02562 * 19 17 16 21 21 N 1.34816 * 106.84376 * 179.97438 * 20 19 17 22 22 C 1.46490 * 126.60021 * 179.97438 * 21 20 19 23 23 C 1.53785 * 113.61219 * 14.13885 * 22 21 20 24 24 C 1.53954 * 87.02003 * 220.04803 * 23 22 21 25 25 C 1.53776 * 113.61686 * 276.53312 * 22 21 20 26 26 N 1.40217 * 106.80517 * 0.02562 * 21 20 19 27 27 N 1.28761 * 108.37149 * 359.74419 * 26 21 20 28 28 C 1.47416 * 108.70404 * 1.05390 * 16 15 14 29 29 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 31 31 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 32 32 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 33 33 H 1.09000 * 109.46986 * 299.99958 * 11 10 9 34 34 H 1.09002 * 109.46857 * 60.00093 * 11 10 9 35 35 H 1.09000 * 110.72381 * 324.79112 * 14 12 11 36 36 H 1.09003 * 110.71803 * 88.05936 * 14 12 11 37 37 H 1.08999 * 109.88240 * 262.77606 * 15 14 12 38 38 H 1.08997 * 110.01151 * 141.68208 * 15 14 12 39 39 H 1.07999 * 126.58069 * 359.95404 * 20 19 17 40 40 H 1.09000 * 112.85418 * 145.33299 * 22 21 20 41 41 H 1.08998 * 113.61756 * 334.56829 * 23 22 21 42 42 H 1.09005 * 113.61411 * 105.46914 * 23 22 21 43 43 H 1.09004 * 113.53673 * 270.81322 * 24 23 22 44 44 H 1.08998 * 113.74284 * 139.94606 * 24 23 22 45 45 H 1.08994 * 113.61744 * 254.52712 * 25 22 21 46 46 H 1.09011 * 113.61417 * 25.34496 * 25 22 21 47 47 H 1.09001 * 110.36817 * 217.03349 * 28 16 15 48 48 H 1.09001 * 110.45891 * 94.76215 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 6 1.8292 -6.1446 0.0058 13 1 2.4945 -6.2088 -0.8553 14 6 0.8535 -7.3503 0.0469 15 6 1.6995 -8.4572 0.7107 16 7 2.7697 -7.7929 1.4690 17 6 3.7339 -8.4149 2.1760 18 8 4.5716 -7.7615 2.7675 19 6 3.7731 -9.8886 2.2321 20 6 4.6925 -10.6377 2.9098 21 7 4.3717 -11.9307 2.7033 22 6 5.0760 -13.1008 3.2333 23 6 6.0638 -12.7655 4.3633 24 6 7.0182 -13.7906 3.7241 25 6 6.2953 -13.5181 2.3944 26 7 3.2348 -11.9402 1.8826 27 7 2.9072 -10.7211 1.6290 28 6 2.6131 -6.3339 1.3284 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0039 31 1 2.6812 -3.7165 -0.8930 32 1 2.6887 -3.7123 0.8869 33 1 0.4412 -4.7598 0.8989 34 1 0.4338 -4.7641 -0.8811 35 1 -0.0217 -7.1177 0.6535 36 1 0.5588 -7.6424 -0.9611 37 1 2.1322 -9.1020 -0.0541 38 1 1.0788 -9.0472 1.3850 39 1 5.5183 -10.2656 3.4980 40 1 4.4056 -13.9269 3.4703 41 1 6.4359 -11.7416 4.3285 42 1 5.7098 -13.0549 5.3528 43 1 6.8795 -14.8057 4.0964 44 1 8.0625 -13.4783 3.7254 45 1 6.1281 -14.4141 1.7968 46 1 6.7300 -12.7006 1.8191 47 1 3.5888 -5.8521 1.2634 48 1 2.0461 -5.9290 2.1666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272441351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:17 Heat of formation + Delta-G solvation = 72.122903 kcal Electronic energy + Delta-G solvation = -27683.673152 eV Core-core repulsion = 23775.784226 eV Total energy + Delta-G solvation = -3907.888926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.37348 -40.99254 -39.74047 -38.84803 -36.83334 -34.68510 -34.07572 -32.76515 -31.92661 -30.70112 -28.70658 -27.07412 -26.83487 -26.12050 -24.86581 -23.62464 -23.36147 -22.60778 -21.28058 -20.87370 -20.49334 -19.14674 -18.90083 -17.64783 -17.47862 -17.10132 -16.65372 -16.52219 -16.33922 -15.88810 -15.75246 -15.33639 -15.17606 -14.92717 -14.40970 -14.16524 -14.04868 -13.95116 -13.65413 -13.54080 -13.36216 -13.26133 -13.07643 -12.96568 -12.81277 -12.78385 -12.32292 -12.16859 -12.04568 -11.96171 -11.85270 -11.67812 -11.54290 -11.51864 -11.38161 -11.30125 -11.15207 -10.91283 -10.41860 -9.70650 -8.98737 -7.94742 -5.23525 0.06627 0.55694 1.02017 1.47355 1.49371 1.58000 1.86224 2.13014 2.56612 2.98764 3.11522 3.36470 3.38543 3.41569 3.63880 3.65047 3.73666 3.74463 3.81792 3.86054 4.12213 4.18733 4.30972 4.33942 4.41803 4.51532 4.55361 4.59074 4.63084 4.70733 4.75158 4.78769 4.88222 4.89579 4.92895 4.96213 5.00120 5.05005 5.12897 5.19335 5.26171 5.31728 5.40425 5.48578 5.49068 5.50833 6.28224 6.36808 6.76548 7.01041 7.34161 8.10875 8.34405 9.28745 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.001806 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.419353 B =15497.974861 C =16285.854654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.747 5.747 10 C 0.148 3.852 11 C -0.099 4.099 12 C -0.084 4.084 13 H 0.090 0.910 14 C -0.120 4.120 15 C 0.114 3.886 16 N -0.606 5.606 17 C 0.611 3.389 18 O -0.575 6.575 19 C -0.120 4.120 20 C 0.107 3.893 21 N -0.336 5.336 22 C 0.105 3.895 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.146 4.146 26 N -0.088 5.088 27 N -0.215 5.215 28 C 0.111 3.889 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.227 0.773 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.800 -35.650 7.314 38.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.390 5.390 10 C 0.022 3.978 11 C -0.137 4.137 12 C -0.103 4.103 13 H 0.108 0.892 14 C -0.157 4.157 15 C -0.008 4.008 16 N -0.337 5.337 17 C 0.398 3.602 18 O -0.455 6.455 19 C -0.260 4.260 20 C -0.051 4.051 21 N -0.120 5.120 22 C 0.005 3.995 23 C -0.182 4.182 24 C -0.162 4.162 25 C -0.184 4.184 26 N -0.068 5.068 27 N -0.089 5.089 28 C -0.012 4.012 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.243 0.757 40 H 0.165 0.835 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.418 -36.198 6.951 38.587 hybrid contribution 0.591 1.796 0.475 1.949 sum 12.009 -34.402 7.425 37.187 Atomic orbital electron populations 1.69812 1.06531 1.26104 1.59461 1.25577 0.96472 1.01107 1.03641 0.85131 0.77649 0.79413 0.77520 1.21211 1.21952 1.19659 1.19652 0.91484 0.85584 1.41342 0.90928 1.42596 1.05705 1.01296 1.89421 1.20870 0.94407 0.85144 0.97429 1.21512 0.97560 0.91907 1.02722 1.22201 0.97168 0.94459 0.96510 0.89155 1.22771 0.97443 0.92617 1.02916 1.22166 0.88023 0.95286 0.95296 1.48361 1.28378 1.08081 1.48873 1.16679 0.80231 0.84928 0.78325 1.90793 1.40523 1.66685 1.47453 1.21257 1.00362 0.94569 1.09786 1.23554 1.00007 0.83535 0.98003 1.50869 1.20759 1.06878 1.33469 1.24047 0.92626 0.85425 0.97369 1.23567 0.94722 1.01967 0.97976 1.22739 0.99500 1.00276 0.93649 1.23460 0.93782 1.02820 0.98383 1.81907 1.00292 1.13314 1.11264 1.74703 1.20837 0.97174 1.16144 1.22361 1.00765 0.79589 0.98446 0.93948 0.79330 0.96345 0.96584 0.91729 0.90752 0.89680 0.87652 0.90490 0.90639 0.75666 0.83518 0.88495 0.88059 0.87481 0.89125 0.89097 0.90091 0.91603 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -39.39 5.60 -343.44 -1.92 -41.32 16 10 C 0.15 6.07 6.11 86.38 0.53 6.60 16 11 C -0.10 -3.06 4.84 30.59 0.15 -2.91 16 12 C -0.08 -2.09 3.07 -9.40 -0.03 -2.12 16 13 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.12 -2.34 6.42 31.78 0.20 -2.14 16 15 C 0.11 2.49 5.52 86.73 0.48 2.96 16 16 N -0.61 -16.45 3.33 -815.57 -2.71 -19.17 16 17 C 0.61 17.78 7.85 86.69 0.68 18.46 16 18 O -0.57 -19.83 17.12 -4.02 -0.07 -19.90 16 19 C -0.12 -2.88 6.85 40.82 0.28 -2.60 16 20 C 0.11 1.82 10.49 83.85 0.88 2.70 16 21 N -0.34 -4.99 3.83 -324.07 -1.24 -6.23 16 22 C 0.10 0.68 5.05 45.52 0.23 0.91 16 23 C -0.14 -0.33 7.47 31.18 0.23 -0.10 16 24 C -0.12 -0.06 8.09 31.18 0.25 0.19 16 25 C -0.15 -0.66 7.88 31.12 0.25 -0.42 16 26 N -0.09 -1.90 13.78 37.02 0.51 -1.39 16 27 N -0.22 -5.19 9.78 -49.99 -0.49 -5.68 16 28 C 0.11 3.16 5.57 86.86 0.48 3.64 16 29 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.37 20.69 7.67 -92.70 -0.71 19.97 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.02 0.68 7.46 -2.39 -0.02 0.66 16 33 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.64 7.62 -2.39 -0.02 1.62 16 38 H 0.08 1.63 7.72 -2.39 -0.02 1.61 16 39 H 0.23 2.49 6.78 -2.91 -0.02 2.47 16 40 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.10 0.25 6.39 -2.39 -0.02 0.24 16 42 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 43 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 44 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.08 0.58 8.14 -2.38 -0.02 0.57 16 47 H 0.07 2.09 7.96 -2.39 -0.02 2.07 16 48 H 0.07 2.01 8.00 -2.39 -0.02 1.99 16 Total: -1.00 -76.96 391.36 2.56 -74.40 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.26 Total: 22.51 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 5.92 Total: 7.54 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -5.57 Total: -133.91 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.07 Total: -19.90 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.96 2.56 -74.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272441351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.525 kcal (2) G-P(sol) polarization free energy of solvation -76.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds