Wall clock time and date at job start Tue Mar 31 2020 18:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.46817 * 124.36211 * 89.99797 * 11 10 9 13 13 C 1.54594 * 105.49553 * 196.92308 * 12 11 10 14 14 C 1.54126 * 101.65077 * 335.01992 * 13 12 11 15 15 C 1.52539 * 110.08201 * 265.34555 * 14 13 12 16 16 C 1.53147 * 109.32067 * 181.90081 * 15 14 13 17 17 N 1.46850 * 109.45560 * 58.25536 * 16 15 14 18 18 C 1.46894 * 111.00081 * 173.65499 * 17 16 15 19 19 C 1.50707 * 109.47065 * 294.35633 * 18 17 16 20 20 C 1.35353 * 126.91070 * 264.68750 * 19 18 17 21 21 N 1.33766 * 106.49635 * 179.90152 * 20 19 18 22 22 N 1.28636 * 108.88609 * 0.36792 * 21 20 19 23 23 N 1.28719 * 110.17964 * 359.76358 * 22 21 20 24 24 H 0.96999 * 125.86949 * 179.97438 * 23 22 21 25 25 C 1.46866 * 111.31033 * 297.83230 * 17 16 15 26 26 C 1.52543 * 110.08411 * 143.30142 * 14 13 12 27 27 C 1.34577 * 124.36032 * 269.70676 * 11 10 9 28 28 O 1.21280 * 125.02866 * 359.28524 * 27 11 10 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.09003 * 110.23998 * 315.92529 * 12 11 10 35 35 H 1.08998 * 110.24296 * 77.82949 * 12 11 10 36 36 H 1.08996 * 110.98927 * 93.11405 * 13 12 11 37 37 H 1.09004 * 110.98829 * 216.92795 * 13 12 11 38 38 H 1.08999 * 109.50194 * 301.85898 * 15 14 13 39 39 H 1.08999 * 109.49741 * 61.95001 * 15 14 13 40 40 H 1.09001 * 109.47352 * 298.26115 * 16 15 14 41 41 H 1.09000 * 109.47502 * 178.25464 * 16 15 14 42 42 H 1.08998 * 109.47723 * 54.35068 * 18 17 16 43 43 H 1.09001 * 109.47604 * 174.35898 * 18 17 16 44 44 H 1.08002 * 126.74889 * 0.03692 * 20 19 18 45 45 H 1.09001 * 109.46993 * 302.18895 * 25 17 16 46 46 H 1.08995 * 109.47545 * 182.17697 * 25 17 16 47 47 H 1.08996 * 109.49528 * 298.06731 * 26 14 13 48 48 H 1.09008 * 109.49707 * 58.15766 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.0991 -5.6481 -1.2135 13 6 0.0186 -6.6522 -0.7506 14 6 0.3878 -6.8447 0.7333 15 6 1.2819 -8.0699 0.8960 16 6 1.5990 -8.2722 2.3806 17 7 0.3467 -8.4320 3.1308 18 6 0.6138 -8.7777 4.5333 19 6 1.2585 -10.1383 4.6013 20 6 0.6374 -11.3226 4.8103 21 7 1.5911 -12.2603 4.7904 22 7 2.7283 -11.6934 4.5905 23 7 2.5753 -10.4209 4.4714 24 1 3.2825 -9.7756 4.3157 25 6 -0.4898 -7.2286 3.0356 26 6 -0.8772 -6.9914 1.5731 27 6 1.1378 -5.5918 1.1095 28 8 1.3666 -5.2315 2.2447 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 0.6800 -4.9513 -1.9394 35 1 1.9475 -6.1780 -1.6464 36 1 -0.9795 -6.2264 -0.8526 37 1 0.0985 -7.5915 -1.2979 38 1 0.7669 -8.9499 0.5108 39 1 2.2092 -7.9195 0.3432 40 1 2.1406 -7.4049 2.7580 41 1 2.2122 -9.1650 2.5028 42 1 1.2834 -8.0363 4.9693 43 1 -0.3238 -8.7919 5.0890 44 1 -0.4205 -11.4797 4.9611 45 1 0.0670 -6.3687 3.4080 46 1 -1.3912 -7.3644 3.6330 47 1 -1.4717 -6.0810 1.4973 48 1 -1.4594 -7.8380 1.2091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272571068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:04 Heat of formation + Delta-G solvation = 61.492193 kcal Electronic energy + Delta-G solvation = -29433.753656 eV Core-core repulsion = 25525.403748 eV Total energy + Delta-G solvation = -3908.349908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55560 -41.11341 -38.18363 -36.18774 -34.94260 -33.59859 -33.15308 -31.90486 -31.10671 -30.33812 -28.58282 -26.86205 -25.23368 -24.26545 -23.66541 -23.05690 -22.02074 -21.88362 -21.25748 -20.25910 -18.46410 -18.34813 -16.90487 -16.67028 -16.00467 -15.82919 -15.55950 -15.35978 -15.02878 -14.69936 -14.52350 -14.42230 -14.15095 -13.71885 -13.42105 -13.30380 -12.95477 -12.72321 -12.68637 -12.32499 -12.28480 -12.08943 -11.97941 -11.84527 -11.50241 -11.35884 -11.21159 -11.17278 -10.97715 -10.83973 -10.78027 -10.49378 -10.42850 -10.05662 -9.93476 -9.51438 -9.39879 -9.16696 -8.44034 -8.41816 -8.09641 -6.08676 -4.12577 1.26684 2.31587 2.45860 2.92638 3.27859 3.32410 3.34040 3.47700 3.70327 4.17063 4.28374 4.35442 4.39543 4.41141 4.54301 4.71305 4.84886 4.95434 5.03183 5.09873 5.15558 5.24723 5.25279 5.27444 5.34862 5.42048 5.51395 5.54505 5.66610 5.68752 5.75066 5.83715 5.88211 5.88727 5.93151 5.97599 6.07531 6.18877 6.37896 6.51394 6.72495 6.73851 6.81404 6.92312 7.43698 7.59292 7.77468 7.90333 8.19589 8.26468 8.59255 8.93796 9.51779 11.02625 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.002477 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.333048 B =11299.440888 C =11646.323860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.127 3.873 11 N -0.609 5.609 12 C 0.100 3.900 13 C -0.125 4.125 14 C -0.095 4.095 15 C -0.088 4.088 16 C 0.046 3.954 17 N -0.529 5.529 18 C 0.123 3.877 19 C 0.004 3.996 20 C -0.034 4.034 21 N -0.269 5.269 22 N -0.083 5.083 23 N -0.390 5.390 24 H 0.446 0.554 25 C 0.043 3.957 26 C -0.090 4.090 27 C 0.522 3.478 28 O -0.531 6.531 29 H 0.262 0.738 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.191 0.809 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -19.906 3.200 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.024 4.024 10 C 0.007 3.993 11 N -0.342 5.342 12 C -0.024 4.024 13 C -0.162 4.162 14 C -0.098 4.098 15 C -0.127 4.127 16 C -0.082 4.082 17 N -0.254 5.254 18 C -0.006 4.006 19 C -0.130 4.130 20 C -0.191 4.191 21 N -0.136 5.136 22 N -0.064 5.064 23 N -0.112 5.112 24 H 0.291 0.709 25 C -0.084 4.084 26 C -0.128 4.128 27 C 0.309 3.691 28 O -0.409 6.409 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.126 0.874 44 H 0.208 0.792 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.234 -21.162 3.595 21.466 hybrid contribution 0.567 3.038 0.020 3.090 sum 0.333 -18.124 3.615 18.484 Atomic orbital electron populations 1.69958 1.06101 1.26880 1.50171 1.24999 0.94866 0.99321 0.95039 0.86609 0.79561 0.82877 0.78679 1.20158 1.21206 1.20155 1.21038 0.92977 0.90701 1.51581 0.92579 1.19381 0.94367 0.90993 0.97665 1.21803 0.95103 0.81075 1.01293 1.48603 1.56171 1.23137 1.06251 1.22063 0.97046 0.94681 0.88587 1.22682 0.99705 0.99856 0.93983 1.21064 0.97128 0.94857 0.96778 1.21346 0.99237 0.96473 0.95609 1.22209 0.91234 1.00185 0.94568 1.61990 1.17067 1.36908 1.09472 1.20532 1.00471 0.88582 0.91058 1.22192 0.84109 0.99364 1.07340 1.23382 1.01125 0.87881 1.06747 1.75101 0.95196 1.27395 1.15897 1.78293 1.19932 0.89038 1.19121 1.45249 1.08731 1.08647 1.48582 0.70871 1.22327 0.97183 0.91422 0.97439 1.21364 0.95173 1.02411 0.93832 1.20443 0.79199 0.84639 0.84830 1.90613 1.57768 1.71652 1.20860 0.92825 0.96488 0.96184 0.91700 0.91243 0.90081 0.91685 0.89689 0.89404 0.90062 0.91249 0.93046 0.91981 0.92930 0.87428 0.79220 0.91095 0.90574 0.90746 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 10 C 0.13 2.59 5.88 -4.04 -0.02 2.56 16 11 N -0.61 -10.34 2.94 -172.46 -0.51 -10.85 16 12 C 0.10 1.25 7.35 -3.03 -0.02 1.23 16 13 C -0.12 -1.27 6.21 -25.31 -0.16 -1.42 16 14 C -0.09 -1.12 0.55 -155.50 -0.09 -1.20 16 15 C -0.09 -0.90 4.76 -26.89 -0.13 -1.02 16 16 C 0.05 0.47 5.09 -3.78 -0.02 0.46 16 17 N -0.53 -5.09 4.63 -235.96 -1.09 -6.18 16 18 C 0.12 0.98 5.53 -4.98 -0.03 0.95 16 19 C 0.00 0.04 6.01 -82.08 -0.49 -0.46 16 20 C -0.03 -0.32 11.99 -17.74 -0.21 -0.53 16 21 N -0.27 -3.28 12.41 30.23 0.38 -2.90 16 22 N -0.08 -0.97 13.38 60.35 0.81 -0.16 16 23 N -0.39 -3.41 6.02 33.55 0.20 -3.21 16 24 H 0.45 2.74 8.63 -190.40 -1.64 1.10 16 25 C 0.04 0.47 5.24 -3.77 -0.02 0.45 16 26 C -0.09 -0.99 4.78 -26.89 -0.13 -1.12 16 27 C 0.52 8.70 6.32 -11.03 -0.07 8.63 16 28 O -0.53 -10.57 13.82 5.56 0.08 -10.50 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 37 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.65 6.65 -51.93 -0.35 0.30 16 41 H 0.06 0.57 6.00 -51.93 -0.31 0.26 16 42 H 0.05 0.43 8.12 -51.93 -0.42 0.00 16 43 H 0.11 0.67 7.98 -51.93 -0.41 0.26 16 44 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.07 1.00 5.79 -51.93 -0.30 0.70 16 46 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -34.23 379.17 -9.51 -43.74 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.85 Total: -1.63 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.95 Total: -4.56 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.52 Total: -49.09 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.23 -9.51 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272571068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.231 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds