Wall clock time and date at job start Tue Mar 31 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.46817 * 124.36211 * 89.99797 * 11 10 9 13 13 C 1.54594 * 105.49553 * 196.92308 * 12 11 10 14 14 C 1.54126 * 101.65077 * 335.01992 * 13 12 11 15 15 C 1.52539 * 110.08201 * 265.34555 * 14 13 12 16 16 C 1.53147 * 109.32067 * 181.90081 * 15 14 13 17 17 N 1.46850 * 109.45560 * 58.25536 * 16 15 14 18 18 C 1.46894 * 111.00081 * 173.65499 * 17 16 15 19 19 C 1.50707 * 109.47065 * 294.35633 * 18 17 16 20 20 C 1.35353 * 126.91070 * 264.68750 * 19 18 17 21 21 N 1.33766 * 106.49635 * 179.90152 * 20 19 18 22 22 N 1.28636 * 108.88609 * 0.36792 * 21 20 19 23 23 N 1.28719 * 110.17964 * 359.76358 * 22 21 20 24 24 H 0.96999 * 125.86949 * 179.97438 * 23 22 21 25 25 C 1.46866 * 111.31033 * 297.83230 * 17 16 15 26 26 C 1.52543 * 110.08411 * 143.30142 * 14 13 12 27 27 C 1.34577 * 124.36032 * 269.70676 * 11 10 9 28 28 O 1.21280 * 125.02866 * 359.28524 * 27 11 10 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.09003 * 110.23998 * 315.92529 * 12 11 10 35 35 H 1.08998 * 110.24296 * 77.82949 * 12 11 10 36 36 H 1.08996 * 110.98927 * 93.11405 * 13 12 11 37 37 H 1.09004 * 110.98829 * 216.92795 * 13 12 11 38 38 H 1.08999 * 109.50194 * 301.85898 * 15 14 13 39 39 H 1.08999 * 109.49741 * 61.95001 * 15 14 13 40 40 H 1.09001 * 109.47352 * 298.26115 * 16 15 14 41 41 H 1.09000 * 109.47502 * 178.25464 * 16 15 14 42 42 H 1.08998 * 109.47723 * 54.35068 * 18 17 16 43 43 H 1.09001 * 109.47604 * 174.35898 * 18 17 16 44 44 H 1.08002 * 126.74889 * 0.03692 * 20 19 18 45 45 H 1.09001 * 109.46993 * 302.18895 * 25 17 16 46 46 H 1.08995 * 109.47545 * 182.17697 * 25 17 16 47 47 H 1.08996 * 109.49528 * 298.06731 * 26 14 13 48 48 H 1.09008 * 109.49707 * 58.15766 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 1.0991 -5.6481 -1.2135 13 6 0.0186 -6.6522 -0.7506 14 6 0.3878 -6.8447 0.7333 15 6 1.2819 -8.0699 0.8960 16 6 1.5990 -8.2722 2.3806 17 7 0.3467 -8.4320 3.1308 18 6 0.6138 -8.7777 4.5333 19 6 1.2585 -10.1383 4.6013 20 6 0.6374 -11.3226 4.8103 21 7 1.5911 -12.2603 4.7904 22 7 2.7283 -11.6934 4.5905 23 7 2.5753 -10.4209 4.4714 24 1 3.2825 -9.7756 4.3157 25 6 -0.4898 -7.2286 3.0356 26 6 -0.8772 -6.9914 1.5731 27 6 1.1378 -5.5918 1.1095 28 8 1.3666 -5.2315 2.2447 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 0.6800 -4.9513 -1.9394 35 1 1.9475 -6.1780 -1.6464 36 1 -0.9795 -6.2264 -0.8526 37 1 0.0985 -7.5915 -1.2979 38 1 0.7669 -8.9499 0.5108 39 1 2.2092 -7.9195 0.3432 40 1 2.1406 -7.4049 2.7580 41 1 2.2122 -9.1650 2.5028 42 1 1.2834 -8.0363 4.9693 43 1 -0.3238 -8.7919 5.0890 44 1 -0.4205 -11.4797 4.9611 45 1 0.0670 -6.3687 3.4080 46 1 -1.3912 -7.3644 3.6330 47 1 -1.4717 -6.0810 1.4973 48 1 -1.4594 -7.8380 1.2091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272571068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:03 Heat of formation + Delta-G solvation = 36.777151 kcal Electronic energy + Delta-G solvation = -29434.825381 eV Core-core repulsion = 25525.403748 eV Total energy + Delta-G solvation = -3909.421633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.30400 -42.20367 -39.14983 -37.50242 -36.25803 -35.01525 -34.26081 -33.06795 -31.94210 -31.66888 -29.88498 -27.75793 -26.95914 -25.29588 -24.49077 -23.83345 -23.60100 -22.73839 -22.17865 -21.55778 -19.57202 -19.16926 -18.70071 -17.67554 -17.24216 -17.00304 -16.64135 -16.40558 -16.23492 -16.00519 -15.62287 -15.29708 -15.06948 -14.76929 -14.60743 -14.47345 -14.31321 -14.05549 -13.94438 -13.55025 -13.36672 -13.16909 -13.01641 -12.93078 -12.84418 -12.62341 -12.60329 -12.24347 -12.10641 -11.98007 -11.93712 -11.85845 -11.61731 -11.46188 -11.34099 -11.27496 -10.63035 -10.49073 -10.22484 -9.53606 -9.30047 -8.26358 -6.39353 0.53454 1.37049 1.40622 1.48325 1.56136 1.64696 1.81529 2.17257 2.39661 2.92156 3.07001 3.29584 3.48381 3.49648 3.64075 3.72070 3.97465 4.01354 4.06617 4.21794 4.28895 4.32729 4.39539 4.43957 4.47202 4.58516 4.61235 4.64271 4.68980 4.71853 4.74853 4.84602 4.86502 4.97132 4.98223 5.08135 5.10869 5.22425 5.23733 5.29054 5.32730 5.44433 5.58588 5.80683 5.86257 5.97424 5.99074 6.12854 6.34734 6.75887 7.27051 7.31014 7.43263 8.85425 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.002477 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.333048 B =11299.440888 C =11646.323860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.027 3.973 10 C 0.143 3.857 11 N -0.622 5.622 12 C 0.092 3.908 13 C -0.113 4.113 14 C -0.085 4.085 15 C -0.085 4.085 16 C 0.047 3.953 17 N -0.520 5.520 18 C 0.125 3.875 19 C 0.012 3.988 20 C -0.035 4.035 21 N -0.300 5.300 22 N -0.108 5.108 23 N -0.381 5.381 24 H 0.455 0.545 25 C 0.046 3.954 26 C -0.090 4.090 27 C 0.508 3.492 28 O -0.574 6.574 29 H 0.265 0.735 30 H -0.001 1.001 31 H -0.027 1.027 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.130 0.870 44 H 0.216 0.784 45 H 0.032 0.968 46 H 0.096 0.904 47 H 0.055 0.945 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 -21.310 2.094 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.083 0.917 9 C -0.011 4.011 10 C 0.021 3.979 11 N -0.353 5.353 12 C -0.030 4.030 13 C -0.151 4.151 14 C -0.088 4.088 15 C -0.123 4.123 16 C -0.081 4.081 17 N -0.245 5.245 18 C -0.005 4.005 19 C -0.123 4.123 20 C -0.193 4.193 21 N -0.167 5.167 22 N -0.088 5.088 23 N -0.104 5.104 24 H 0.302 0.698 25 C -0.081 4.081 26 C -0.128 4.128 27 C 0.296 3.704 28 O -0.454 6.454 29 H 0.074 0.926 30 H 0.017 0.983 31 H -0.008 1.008 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.148 0.852 44 H 0.233 0.767 45 H 0.051 0.949 46 H 0.115 0.885 47 H 0.074 0.926 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.227 -22.605 2.461 22.739 hybrid contribution 0.540 3.511 0.407 3.576 sum 0.313 -19.093 2.869 19.310 Atomic orbital electron populations 1.70100 1.07918 1.28011 1.51068 1.26003 0.95789 1.03521 0.94374 0.85450 0.78254 0.77739 0.79318 1.18471 1.20765 1.19533 1.21513 0.93681 0.91881 1.51420 0.91689 1.19175 0.94495 0.93045 0.94416 1.21305 0.93883 0.81340 1.01357 1.48726 1.56027 1.22156 1.08422 1.22392 0.98979 0.94921 0.86726 1.22761 0.98683 1.00893 0.92742 1.21071 0.97014 0.92776 0.97986 1.21392 0.99309 0.96136 0.95416 1.22190 0.91473 0.99431 0.95039 1.62044 1.16491 1.35610 1.10346 1.20626 1.01501 0.87949 0.90411 1.22265 0.83887 0.99359 1.06811 1.23875 1.02035 0.87449 1.05907 1.75076 0.95914 1.28641 1.17039 1.78256 1.20150 0.90012 1.20418 1.45290 1.09302 1.08238 1.47567 0.69770 1.22246 0.97637 0.90540 0.97690 1.21401 0.94792 1.02657 0.93910 1.21457 0.78764 0.86079 0.84054 1.90588 1.59122 1.73091 1.22614 0.92649 0.98269 1.00823 0.89594 0.93043 0.90798 0.88796 0.89763 0.85312 0.87588 0.90837 0.95980 0.90740 0.93350 0.85185 0.76687 0.94930 0.88546 0.92632 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.43 5.30 29.85 0.16 1.59 16 10 C 0.14 6.00 5.88 86.38 0.51 6.51 16 11 N -0.62 -21.36 2.94 -818.04 -2.40 -23.76 16 12 C 0.09 2.14 7.35 86.86 0.64 2.78 16 13 C -0.11 -1.98 6.21 31.52 0.20 -1.79 16 14 C -0.08 -1.88 0.55 -52.82 -0.03 -1.90 16 15 C -0.08 -1.48 4.76 30.49 0.15 -1.34 16 16 C 0.05 0.90 5.09 86.36 0.44 1.34 16 17 N -0.52 -9.03 4.63 -900.44 -4.17 -13.20 16 18 C 0.12 1.76 5.53 85.56 0.47 2.23 16 19 C 0.01 0.18 6.01 41.36 0.25 0.43 16 20 C -0.03 -0.58 11.99 83.73 1.00 0.42 16 21 N -0.30 -6.99 12.41 -58.26 -0.72 -7.71 16 22 N -0.11 -2.43 13.38 37.02 0.50 -1.93 16 23 N -0.38 -6.23 6.02 -47.78 -0.29 -6.52 16 24 H 0.45 5.25 8.63 -219.96 -1.90 3.35 16 25 C 0.05 0.97 5.24 86.36 0.45 1.42 16 26 C -0.09 -1.85 4.78 30.49 0.15 -1.70 16 27 C 0.51 17.29 6.32 87.72 0.55 17.85 16 28 O -0.57 -24.23 13.82 -3.03 -0.04 -24.27 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 32 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.05 2.31 7.92 -2.39 -0.02 2.29 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.52 7.89 -2.39 -0.02 1.50 16 37 H 0.13 1.28 7.87 -2.39 -0.02 1.26 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.02 0.56 6.65 -2.39 -0.02 0.55 16 41 H 0.07 1.23 6.00 -2.39 -0.01 1.22 16 42 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 43 H 0.13 1.28 7.98 -2.39 -0.02 1.26 16 44 H 0.22 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.03 0.96 5.79 -2.39 -0.01 0.94 16 46 H 0.10 1.59 8.01 -2.39 -0.02 1.57 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -78.60 379.17 -0.12 -78.72 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.93 Total: 11.75 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.63 Total: -2.49 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -6.81 Total: -109.75 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -78.60 -0.12 -78.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272571068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.494 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds