Wall clock time and date at job start Tue Mar 31 2020 18:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47376 * 240.00539 * 3 2 1 5 5 H 1.48500 * 109.47635 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47046 * 120.00888 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00161 * 164.47745 * 7 2 1 9 9 N 1.36941 * 120.00024 * 344.48080 * 7 2 1 10 10 C 1.47112 * 121.51266 * 336.18756 * 9 7 2 11 11 C 1.50324 * 109.10493 * 223.16067 * 10 9 7 12 12 C 1.29449 * 123.65415 * 348.53287 * 11 10 9 13 13 C 1.50701 * 117.69823 * 181.13891 * 12 11 10 14 14 N 1.46504 * 109.46721 * 95.00161 * 13 12 11 15 15 C 1.34774 * 119.99812 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00203 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99977 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47155 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47352 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47352 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.46938 * 179.97438 * 20 19 18 22 22 C 1.35354 * 126.90842 * 274.68161 * 21 20 19 23 23 N 1.33772 * 106.49121 * 179.91061 * 22 21 20 24 24 N 1.28636 * 108.88814 * 0.36339 * 23 22 21 25 25 N 1.28712 * 110.17579 * 359.77077 * 24 23 22 26 26 H 0.96999 * 125.86717 * 180.02562 * 25 24 23 27 27 C 1.49977 * 124.61025 * 1.16968 * 12 11 10 28 28 C 1.47344 * 121.37555 * 155.98860 * 9 7 2 29 29 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.71950 * 103.16864 * 10 9 7 31 31 H 1.08998 * 109.37980 * 342.94520 * 10 9 7 32 32 H 1.08002 * 118.17239 * 168.81891 * 11 10 9 33 33 H 1.08992 * 109.47675 * 215.00153 * 13 12 11 34 34 H 1.09004 * 109.46781 * 335.00934 * 13 12 11 35 35 H 0.96995 * 119.99987 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.47213 * 299.99790 * 17 15 14 37 37 H 1.08998 * 109.47456 * 59.99583 * 17 15 14 38 38 H 1.08992 * 109.47205 * 299.99644 * 18 17 15 39 39 H 1.09001 * 109.47472 * 60.00200 * 18 17 15 40 40 H 1.09010 * 109.46624 * 299.99851 * 19 18 17 41 41 H 1.08998 * 109.47469 * 59.99378 * 19 18 17 42 42 H 1.08992 * 109.47205 * 299.99507 * 20 19 18 43 43 H 1.09004 * 109.46981 * 60.00123 * 20 19 18 44 44 H 1.08000 * 126.75341 * 0.03634 * 22 21 20 45 45 H 1.08991 * 109.31402 * 101.26380 * 27 12 11 46 46 H 1.08996 * 109.31268 * 220.69455 * 27 12 11 47 47 H 1.09000 * 109.77728 * 358.62293 * 28 9 7 48 48 H 1.08993 * 109.77708 * 237.81222 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2508 9 7 1.3630 -2.3666 0.3163 10 6 0.1413 -2.3689 1.1358 11 6 0.2253 -3.4833 2.1412 12 6 1.1206 -4.4175 2.1034 13 6 1.0643 -5.4850 3.1657 14 7 0.3197 -6.6401 2.6581 15 6 0.1403 -7.7228 3.4404 16 8 0.5956 -7.7410 4.5644 17 6 -0.6251 -8.9112 2.9182 18 6 -0.6835 -9.9945 3.9971 19 6 -1.4600 -11.2014 3.4667 20 6 -1.5189 -12.2843 4.5459 21 6 -2.2844 -13.4728 4.0236 22 6 -3.6265 -13.6470 4.0415 23 7 -3.8627 -14.8361 3.4760 24 7 -2.7407 -15.3666 3.1377 25 7 -1.7678 -14.5829 3.4477 26 1 -0.8261 -14.7580 3.2945 27 6 2.2103 -4.5122 1.0773 28 6 1.8588 -3.6722 -0.1535 29 1 -0.4850 0.8401 0.0004 30 1 -0.7294 -2.5189 0.4976 31 1 0.0529 -1.4150 1.6559 32 1 -0.5046 -3.5084 2.9368 33 1 2.0771 -5.7917 3.4266 34 1 0.5645 -5.0909 4.0506 35 1 -0.0441 -6.6257 1.7591 36 1 -1.6379 -8.6047 2.6565 37 1 -0.1249 -9.3055 2.0337 38 1 0.3290 -10.3011 4.2592 39 1 -1.1841 -9.6000 4.8814 40 1 -2.4727 -10.8950 3.2043 41 1 -0.9592 -11.5957 2.5826 42 1 -0.5066 -12.5908 4.8087 43 1 -2.0202 -11.8896 5.4297 44 1 -4.3622 -12.9602 4.4332 45 1 3.1432 -4.1484 1.5076 46 1 2.3356 -5.5531 0.7795 47 1 2.7473 -3.5296 -0.7687 48 1 1.0843 -4.1738 -0.7336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284938817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:27 Heat of formation + Delta-G solvation = 73.044567 kcal Electronic energy + Delta-G solvation = -26813.184633 eV Core-core repulsion = 22905.335673 eV Total energy + Delta-G solvation = -3907.848960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.74086 -39.83751 -37.86814 -36.40246 -34.97209 -33.81407 -33.03099 -32.69527 -30.97944 -29.87294 -29.49815 -27.12219 -25.43070 -23.99545 -23.41039 -22.80389 -22.31037 -21.60552 -21.11640 -20.38414 -18.67147 -17.77336 -17.24373 -16.49993 -16.38602 -16.05951 -15.66001 -15.31037 -15.02868 -14.95983 -14.62506 -14.24356 -13.90370 -13.84797 -13.47576 -13.39082 -13.08159 -12.86565 -12.50205 -12.30978 -12.11698 -12.01994 -11.76677 -11.65735 -11.61330 -11.40695 -11.28135 -11.05918 -10.99772 -10.95049 -10.77245 -10.46494 -10.37581 -9.97408 -9.88307 -9.65776 -9.58863 -9.01878 -8.73057 -8.11891 -6.80813 -5.84969 -3.23878 1.08763 2.11330 2.27273 2.53983 2.60054 3.35631 3.41546 3.42709 3.46109 3.92106 4.14756 4.37802 4.40581 4.45055 4.60535 4.64795 4.87260 4.93736 5.00266 5.04148 5.09916 5.26087 5.29322 5.34039 5.34603 5.38148 5.47806 5.53338 5.68158 5.76102 5.79898 5.88956 5.93426 6.00820 6.10243 6.26979 6.35328 6.40083 6.48155 6.67179 6.80213 7.09999 7.19543 7.26238 7.53458 7.67113 7.76493 7.99977 8.19950 8.32494 9.13895 9.76566 10.34578 11.25523 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.001461 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.216960 B =19158.057369 C =19328.252466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.000 4.000 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.123 4.123 12 C -0.167 4.167 13 C 0.157 3.843 14 N -0.722 5.722 15 C 0.507 3.493 16 O -0.549 6.549 17 C -0.142 4.142 18 C -0.103 4.103 19 C -0.116 4.116 20 C -0.050 4.050 21 C -0.005 4.005 22 C -0.049 4.049 23 N -0.266 5.266 24 N -0.085 5.085 25 N -0.391 5.391 26 H 0.447 0.553 27 C -0.090 4.090 28 C 0.143 3.857 29 H 0.255 0.745 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.191 0.809 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -24.023 7.458 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.198 4.198 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.144 4.144 12 C -0.168 4.168 13 C 0.034 3.966 14 N -0.373 5.373 15 C 0.294 3.706 16 O -0.427 6.427 17 C -0.182 4.182 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.089 4.089 21 C -0.139 4.139 22 C -0.206 4.206 23 N -0.133 5.133 24 N -0.065 5.065 25 N -0.111 5.111 26 H 0.293 0.707 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.236 0.764 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.208 0.792 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.142 -25.209 7.639 26.527 hybrid contribution 1.125 1.862 -0.034 2.176 sum -2.017 -23.346 7.606 24.637 Atomic orbital electron populations 1.69992 1.05186 1.25695 1.54634 1.24983 0.95402 0.98315 1.01123 0.86316 0.78831 0.83194 0.78118 1.20903 1.21597 1.21052 1.19143 0.92245 0.84348 1.41983 0.91368 1.44146 1.29015 1.01179 1.57434 1.19786 0.88738 0.94906 0.89763 1.23287 0.95816 0.96649 0.98665 1.20498 1.00029 0.97263 0.99028 1.20444 0.96062 0.84561 0.95513 1.46252 1.56432 1.16410 1.18180 1.20706 0.80289 0.84019 0.85614 1.90692 1.50550 1.81962 1.19542 1.21678 1.01636 0.94389 1.00491 1.21321 1.01419 0.93389 0.97985 1.21642 1.01664 0.94567 0.97589 1.20222 0.99659 0.89811 0.99225 1.22404 0.95154 0.92410 1.03921 1.23468 0.94289 0.97115 1.05696 1.75118 1.17225 1.08092 1.12862 1.78316 0.90534 1.17732 1.19961 1.45156 1.11638 1.13250 1.41100 0.70732 1.20751 0.96642 0.98946 0.96532 1.20955 0.97363 0.87244 0.92767 0.93514 0.94074 0.88828 0.88807 0.91708 0.91740 0.76407 0.88786 0.88982 0.91021 0.90712 0.90909 0.91791 0.90126 0.88346 0.79198 0.91773 0.92948 0.92454 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.61 11.07 55.49 0.61 -25.00 16 2 C 0.00 -0.01 5.01 -17.43 -0.09 -0.09 16 3 Si 0.91 21.31 29.58 -169.99 -5.03 16.28 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.63 9.71 -15.06 -0.15 -6.78 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.37 3.01 -173.59 -0.52 -14.89 16 10 C 0.19 4.40 5.25 -5.04 -0.03 4.37 16 11 C -0.12 -2.24 9.47 -35.78 -0.34 -2.58 16 12 C -0.17 -2.72 5.22 -100.99 -0.53 -3.25 16 13 C 0.16 2.21 5.66 -5.19 -0.03 2.18 16 14 N -0.72 -8.33 5.55 -61.47 -0.34 -8.68 16 15 C 0.51 5.78 7.83 -10.99 -0.09 5.70 16 16 O -0.55 -8.38 15.98 5.56 0.09 -8.29 16 17 C -0.14 -0.97 5.70 -27.89 -0.16 -1.13 16 18 C -0.10 -0.62 4.50 -26.73 -0.12 -0.74 16 19 C -0.12 -0.46 5.20 -26.73 -0.14 -0.60 16 20 C -0.05 -0.16 5.78 -27.88 -0.16 -0.32 16 21 C 0.00 -0.03 6.56 -82.09 -0.54 -0.56 16 22 C -0.05 -0.35 11.99 -17.74 -0.21 -0.56 16 23 N -0.27 -2.76 12.41 30.24 0.38 -2.38 16 24 N -0.09 -0.80 13.38 60.35 0.81 0.00 16 25 N -0.39 -2.20 6.98 33.54 0.23 -1.97 16 26 H 0.45 0.90 8.96 -190.40 -1.71 -0.80 16 27 C -0.09 -1.48 5.95 -28.18 -0.17 -1.65 16 28 C 0.14 2.83 6.57 -3.53 -0.02 2.80 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 2.40 6.40 -51.93 -0.33 2.07 16 32 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 33 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.06 0.96 7.78 -51.93 -0.40 0.55 16 35 H 0.40 3.96 8.46 -40.82 -0.35 3.61 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 40 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.19 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.11 7.96 -51.93 -0.41 0.69 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -34.00 396.95 -9.62 -43.63 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -9.07 Total: -1.47 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.76 Total: -3.21 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 1.17 Total: -52.92 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.00 -9.62 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284938817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.671 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds