Wall clock time and date at job start Tue Mar 31 2020 18:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47376 * 240.00539 * 3 2 1 5 5 H 1.48500 * 109.47635 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47046 * 120.00888 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00161 * 164.47745 * 7 2 1 9 9 N 1.36941 * 120.00024 * 344.48080 * 7 2 1 10 10 C 1.47112 * 121.51266 * 336.18756 * 9 7 2 11 11 C 1.50324 * 109.10493 * 223.16067 * 10 9 7 12 12 C 1.29449 * 123.65415 * 348.53287 * 11 10 9 13 13 C 1.50701 * 117.69823 * 181.13891 * 12 11 10 14 14 N 1.46504 * 109.46721 * 95.00161 * 13 12 11 15 15 C 1.34774 * 119.99812 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00203 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99977 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47155 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47352 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47352 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.46938 * 179.97438 * 20 19 18 22 22 C 1.35354 * 126.90842 * 274.68161 * 21 20 19 23 23 N 1.33772 * 106.49121 * 179.91061 * 22 21 20 24 24 N 1.28636 * 108.88814 * 0.36339 * 23 22 21 25 25 N 1.28712 * 110.17579 * 359.77077 * 24 23 22 26 26 H 0.96999 * 125.86717 * 180.02562 * 25 24 23 27 27 C 1.49977 * 124.61025 * 1.16968 * 12 11 10 28 28 C 1.47344 * 121.37555 * 155.98860 * 9 7 2 29 29 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.71950 * 103.16864 * 10 9 7 31 31 H 1.08998 * 109.37980 * 342.94520 * 10 9 7 32 32 H 1.08002 * 118.17239 * 168.81891 * 11 10 9 33 33 H 1.08992 * 109.47675 * 215.00153 * 13 12 11 34 34 H 1.09004 * 109.46781 * 335.00934 * 13 12 11 35 35 H 0.96995 * 119.99987 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.47213 * 299.99790 * 17 15 14 37 37 H 1.08998 * 109.47456 * 59.99583 * 17 15 14 38 38 H 1.08992 * 109.47205 * 299.99644 * 18 17 15 39 39 H 1.09001 * 109.47472 * 60.00200 * 18 17 15 40 40 H 1.09010 * 109.46624 * 299.99851 * 19 18 17 41 41 H 1.08998 * 109.47469 * 59.99378 * 19 18 17 42 42 H 1.08992 * 109.47205 * 299.99507 * 20 19 18 43 43 H 1.09004 * 109.46981 * 60.00123 * 20 19 18 44 44 H 1.08000 * 126.75341 * 0.03634 * 22 21 20 45 45 H 1.08991 * 109.31402 * 101.26380 * 27 12 11 46 46 H 1.08996 * 109.31268 * 220.69455 * 27 12 11 47 47 H 1.09000 * 109.77728 * 358.62293 * 28 9 7 48 48 H 1.08993 * 109.77708 * 237.81222 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2508 9 7 1.3630 -2.3666 0.3163 10 6 0.1413 -2.3689 1.1358 11 6 0.2253 -3.4833 2.1412 12 6 1.1206 -4.4175 2.1034 13 6 1.0643 -5.4850 3.1657 14 7 0.3197 -6.6401 2.6581 15 6 0.1403 -7.7228 3.4404 16 8 0.5956 -7.7410 4.5644 17 6 -0.6251 -8.9112 2.9182 18 6 -0.6835 -9.9945 3.9971 19 6 -1.4600 -11.2014 3.4667 20 6 -1.5189 -12.2843 4.5459 21 6 -2.2844 -13.4728 4.0236 22 6 -3.6265 -13.6470 4.0415 23 7 -3.8627 -14.8361 3.4760 24 7 -2.7407 -15.3666 3.1377 25 7 -1.7678 -14.5829 3.4477 26 1 -0.8261 -14.7580 3.2945 27 6 2.2103 -4.5122 1.0773 28 6 1.8588 -3.6722 -0.1535 29 1 -0.4850 0.8401 0.0004 30 1 -0.7294 -2.5189 0.4976 31 1 0.0529 -1.4150 1.6559 32 1 -0.5046 -3.5084 2.9368 33 1 2.0771 -5.7917 3.4266 34 1 0.5645 -5.0909 4.0506 35 1 -0.0441 -6.6257 1.7591 36 1 -1.6379 -8.6047 2.6565 37 1 -0.1249 -9.3055 2.0337 38 1 0.3290 -10.3011 4.2592 39 1 -1.1841 -9.6000 4.8814 40 1 -2.4727 -10.8950 3.2043 41 1 -0.9592 -11.5957 2.5826 42 1 -0.5066 -12.5908 4.8087 43 1 -2.0202 -11.8896 5.4297 44 1 -4.3622 -12.9602 4.4332 45 1 3.1432 -4.1484 1.5076 46 1 2.3356 -5.5531 0.7795 47 1 2.7473 -3.5296 -0.7687 48 1 1.0843 -4.1738 -0.7336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284938817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:26 Heat of formation + Delta-G solvation = 49.938546 kcal Electronic energy + Delta-G solvation = -26814.186585 eV Core-core repulsion = 22905.335673 eV Total energy + Delta-G solvation = -3908.850912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.25321 -40.79395 -39.34032 -36.90370 -36.29073 -34.51002 -34.34394 -33.34009 -32.56201 -31.43173 -30.18877 -28.49325 -26.43358 -25.25829 -24.34204 -23.96046 -23.02146 -22.63491 -21.96850 -21.22798 -19.49739 -19.14346 -18.27303 -17.30990 -17.12933 -17.00124 -16.90794 -16.81232 -15.92136 -15.71363 -15.42549 -15.39959 -15.19448 -15.11560 -14.78727 -14.50581 -13.98298 -13.83799 -13.54673 -13.46270 -13.27838 -13.01728 -12.90134 -12.76920 -12.58424 -12.50309 -12.26571 -12.21916 -12.08457 -12.06576 -11.78162 -11.70503 -11.57522 -11.38904 -11.27347 -10.91415 -10.67560 -10.09318 -10.03441 -9.63319 -8.75105 -7.88564 -5.29497 0.61326 1.20975 1.47400 1.49944 1.56197 1.56477 1.73651 1.92578 2.51291 2.52516 3.28774 3.52622 3.63113 3.75784 3.85123 3.93029 3.97642 4.02093 4.07274 4.21417 4.41746 4.45405 4.53564 4.55633 4.61802 4.63416 4.72691 4.77535 4.84091 4.87190 4.90973 4.95125 5.02497 5.10958 5.16082 5.21788 5.24685 5.38562 5.41103 5.46224 5.48703 5.55796 5.61284 5.77829 6.02794 6.17633 6.33799 6.64794 7.13488 7.32955 7.45866 7.83651 8.37337 9.19772 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.001461 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.216960 B =19158.057369 C =19328.252466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.204 3.796 11 C -0.143 4.143 12 C -0.139 4.139 13 C 0.167 3.833 14 N -0.717 5.717 15 C 0.505 3.495 16 O -0.590 6.590 17 C -0.135 4.135 18 C -0.099 4.099 19 C -0.107 4.107 20 C -0.045 4.045 21 C 0.012 3.988 22 C -0.063 4.063 23 N -0.307 5.307 24 N -0.120 5.120 25 N -0.377 5.377 26 H 0.462 0.538 27 C -0.083 4.083 28 C 0.138 3.862 29 H 0.250 0.750 30 H 0.015 0.985 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.211 0.789 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.058 0.942 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 -25.494 7.700 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.079 3.921 11 C -0.164 4.164 12 C -0.140 4.140 13 C 0.043 3.957 14 N -0.369 5.369 15 C 0.294 3.706 16 O -0.471 6.471 17 C -0.175 4.175 18 C -0.137 4.137 19 C -0.146 4.146 20 C -0.084 4.084 21 C -0.123 4.123 22 C -0.221 4.221 23 N -0.173 5.173 24 N -0.099 5.099 25 N -0.100 5.100 26 H 0.310 0.690 27 C -0.122 4.122 28 C 0.012 3.988 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.228 0.772 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.059 -26.737 7.846 27.940 hybrid contribution 0.872 2.285 -0.113 2.448 sum -1.188 -24.452 7.734 25.673 Atomic orbital electron populations 1.70152 1.06467 1.25852 1.56061 1.25714 0.96152 1.01270 1.01622 0.85344 0.77532 0.79357 0.78242 1.20069 1.22058 1.20709 1.19483 0.92581 0.85681 1.41153 0.91225 1.44426 1.29221 1.02133 1.58125 1.19428 0.87664 0.95032 0.89996 1.22932 0.98276 0.96197 0.98947 1.20627 0.98190 0.96625 0.98509 1.20167 0.96496 0.84705 0.94302 1.46139 1.56161 1.15751 1.18809 1.21502 0.79620 0.84622 0.84863 1.90682 1.52292 1.82729 1.21410 1.21747 1.02043 0.92436 1.01242 1.21262 1.01119 0.93859 0.97457 1.21541 1.01540 0.93697 0.97774 1.20289 1.00292 0.88637 0.99229 1.22672 0.94710 0.92463 1.02473 1.23958 0.95752 0.96695 1.05691 1.75065 1.18168 1.09748 1.14336 1.78246 0.91125 1.18936 1.21631 1.45194 1.12022 1.12815 1.39970 0.68980 1.20687 0.96255 1.00338 0.94929 1.21153 0.97394 0.85816 0.94395 0.94122 0.96713 0.92598 0.87063 0.91651 0.92415 0.75114 0.86893 0.86699 0.91880 0.91869 0.90566 0.91131 0.88659 0.87399 0.77238 0.92041 0.89222 0.92343 0.95304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.51 11.07 21.65 0.24 -54.27 16 2 C -0.05 -2.90 5.01 84.86 0.43 -2.47 16 3 Si 0.97 44.36 29.58 68.60 2.03 46.39 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.26 -14.00 9.71 84.03 0.82 -13.18 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -29.97 3.01 -703.11 -2.12 -32.08 16 10 C 0.20 9.56 5.25 85.40 0.45 10.01 16 11 C -0.14 -5.11 9.47 27.11 0.26 -4.86 16 12 C -0.14 -4.23 5.22 -15.13 -0.08 -4.31 16 13 C 0.17 4.29 5.66 85.63 0.48 4.78 16 14 N -0.72 -14.40 5.55 -466.79 -2.59 -16.99 16 15 C 0.51 10.14 7.83 87.66 0.69 10.82 16 16 O -0.59 -16.94 15.98 -3.04 -0.05 -16.99 16 17 C -0.14 -1.37 5.70 29.85 0.17 -1.20 16 18 C -0.10 -0.90 4.50 30.59 0.14 -0.77 16 19 C -0.11 -0.47 5.20 30.59 0.16 -0.32 16 20 C -0.05 -0.15 5.78 29.85 0.17 0.02 16 21 C 0.01 0.10 6.56 41.36 0.27 0.37 16 22 C -0.06 -0.82 11.99 83.73 1.00 0.19 16 23 N -0.31 -6.28 12.41 -58.25 -0.72 -7.00 16 24 N -0.12 -2.21 13.38 37.02 0.50 -1.71 16 25 N -0.38 -3.66 6.98 -47.79 -0.33 -3.99 16 26 H 0.46 0.99 8.96 -219.96 -1.97 -0.98 16 27 C -0.08 -2.53 5.95 29.66 0.18 -2.36 16 28 C 0.14 5.26 6.57 86.25 0.57 5.83 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 3.01 6.40 -2.39 -0.02 2.99 16 32 H 0.11 3.55 7.73 -2.91 -0.02 3.53 16 33 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 34 H 0.06 1.60 7.78 -2.38 -0.02 1.58 16 35 H 0.41 6.65 8.46 -92.71 -0.78 5.87 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.70 8.10 -2.39 -0.02 0.69 16 39 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 40 H 0.08 0.33 8.14 -2.38 -0.02 0.32 16 41 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 47 H 0.06 2.18 7.96 -2.39 -0.02 2.17 16 48 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.29 396.95 0.87 -75.42 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -1.78 Total: 8.68 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.70 Total: 2.56 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.03 Total: -116.05 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.29 0.87 -75.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284938817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.360 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds