Wall clock time and date at job start Tue Mar 31 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48496 * 109.46981 * 240.00104 * 3 2 1 5 5 H 1.48495 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46982 * 120.00069 * 3 2 1 7 7 C 1.38810 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00281 * 197.01282 * 7 2 1 9 9 N 1.36941 * 119.99794 * 17.02040 * 7 2 1 10 10 C 1.47079 * 120.87905 * 206.58400 * 9 7 2 11 11 C 1.53236 * 108.51986 * 231.16041 * 10 9 7 12 12 N 1.46902 * 109.34242 * 306.16956 * 11 10 9 13 13 C 1.46902 * 110.99958 * 187.25581 * 12 11 10 14 14 C 1.52996 * 109.46750 * 170.00400 * 13 12 11 15 15 N 1.46503 * 109.46824 * 180.02562 * 14 13 12 16 16 C 1.34783 * 120.00122 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99742 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99947 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.46885 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47226 * 179.97438 * 19 18 16 21 21 C 1.38628 * 120.44478 * 124.99928 * 20 19 18 22 22 C 1.38581 * 118.39428 * 179.70351 * 21 20 19 23 23 N 1.32346 * 119.10694 * 0.27700 * 22 21 20 24 24 C 1.31779 * 120.81831 * 359.97438 * 23 22 21 25 25 N 1.31806 * 121.75801 * 0.02562 * 24 23 22 26 26 C 1.46896 * 111.26393 * 63.10603 * 12 11 10 27 27 C 1.47080 * 120.88119 * 26.55998 * 9 7 2 28 28 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.62871 * 111.45047 * 10 9 7 30 30 H 1.08997 * 109.78922 * 350.96749 * 10 9 7 31 31 H 1.09009 * 109.49146 * 186.21009 * 11 10 9 32 32 H 1.09000 * 109.49572 * 66.13427 * 11 10 9 33 33 H 1.08995 * 109.47170 * 49.99780 * 13 12 11 34 34 H 1.09001 * 109.46596 * 290.00230 * 13 12 11 35 35 H 1.08995 * 109.47790 * 59.99760 * 14 13 12 36 36 H 1.09001 * 109.47433 * 299.99318 * 14 13 12 37 37 H 0.96999 * 120.00069 * 359.97438 * 15 14 13 38 38 H 1.09003 * 109.47032 * 60.00002 * 18 16 15 39 39 H 1.08997 * 109.47262 * 299.99186 * 18 16 15 40 40 H 1.09001 * 109.47085 * 59.99801 * 19 18 16 41 41 H 1.09007 * 109.47121 * 300.00252 * 19 18 16 42 42 H 1.07993 * 120.80344 * 359.97136 * 21 20 19 43 43 H 1.07999 * 120.44192 * 180.29826 * 22 21 20 44 44 H 1.08001 * 119.12454 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.49672 * 56.86054 * 26 12 11 46 46 H 1.09005 * 109.48802 * 176.93754 * 26 12 11 47 47 H 1.09000 * 109.62794 * 248.54630 * 27 9 7 48 48 H 1.08998 * 109.63163 * 9.13027 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3461 10 6 1.8309 -3.6609 0.1685 11 6 2.0022 -4.6200 -1.0142 12 7 0.7546 -4.6656 -1.7884 13 6 0.8181 -5.7008 -2.8288 14 6 -0.5694 -5.8904 -3.4448 15 7 -0.5062 -6.9232 -4.4819 16 6 -1.6176 -7.2606 -5.1657 17 8 -2.6702 -6.7094 -4.9221 18 6 -1.5524 -8.3225 -6.2330 19 6 -2.9400 -8.5123 -6.8489 20 6 -2.8748 -9.5738 -7.9166 21 6 -3.7175 -10.6734 -7.8663 22 6 -3.6256 -11.6207 -8.8736 23 7 -2.7386 -11.4482 -9.8406 24 6 -1.9501 -10.3925 -9.8531 25 7 -2.0092 -9.4714 -8.9121 26 6 0.4400 -3.3537 -2.3695 27 6 0.2045 -2.3425 -1.2424 28 1 -0.4850 0.8401 0.0004 29 1 1.0920 -4.0628 0.8618 30 1 2.7848 -3.5375 0.6811 31 1 2.2363 -5.6177 -0.6425 32 1 2.8136 -4.2696 -1.6522 33 1 1.1511 -6.6399 -2.3871 34 1 1.5209 -5.3944 -3.6036 35 1 -0.9025 -4.9513 -3.8865 36 1 -1.2722 -6.1968 -2.6700 37 1 0.3357 -7.3637 -4.6770 38 1 -1.2199 -9.2618 -5.7910 39 1 -0.8495 -8.0164 -7.0077 40 1 -3.2730 -7.5732 -7.2907 41 1 -3.6428 -8.8186 -6.0740 42 1 -4.4313 -10.7869 -7.0640 43 1 -4.2694 -12.4879 -8.8697 44 1 -1.2358 -10.2793 -10.6552 45 1 1.2730 -3.0208 -2.9886 46 1 -0.4591 -3.4328 -2.9808 47 1 -0.6907 -2.6177 -0.6847 48 1 0.0841 -1.3449 -1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316965019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:03 Heat of formation + Delta-G solvation = 40.261693 kcal Electronic energy + Delta-G solvation = -27247.920892 eV Core-core repulsion = 23338.650360 eV Total energy + Delta-G solvation = -3909.270532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48441 -39.87197 -38.23307 -35.69853 -35.21849 -33.97037 -33.23586 -31.75957 -31.28402 -29.94830 -28.97598 -26.57760 -25.44158 -24.80390 -23.34886 -22.72066 -22.42044 -21.32306 -20.45869 -19.11517 -18.09695 -17.60915 -16.85210 -16.72303 -16.21199 -15.98242 -15.91125 -15.35233 -14.94552 -14.84328 -14.38109 -14.31853 -14.12737 -13.89394 -13.56953 -13.44903 -13.32949 -13.08074 -12.82099 -12.61562 -12.48925 -11.73301 -11.64624 -11.44221 -11.31954 -11.29357 -11.05034 -10.99663 -10.73034 -10.48629 -10.32245 -10.13864 -10.06114 -9.97505 -9.74935 -9.69485 -9.62574 -9.12146 -8.50148 -7.90148 -6.66608 -5.77311 -3.18717 0.43469 0.56942 2.49278 2.92802 3.31101 3.38802 3.44809 3.45667 3.56137 3.72043 3.96899 4.34101 4.43220 4.51414 4.56997 4.62326 4.71229 4.74717 4.97516 5.03675 5.12622 5.20596 5.27483 5.40062 5.42021 5.50384 5.53336 5.62200 5.81453 5.89622 5.91508 5.95181 6.05232 6.09985 6.19664 6.30369 6.34117 6.52675 6.53207 6.68075 6.91826 7.23342 7.31937 7.53414 7.61507 7.63240 7.69172 7.81311 8.07002 8.44078 9.21772 9.85177 10.43617 11.31510 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.001598 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.180616 B =17520.046225 C =17774.438709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.120 3.880 15 N -0.729 5.729 16 C 0.512 3.488 17 O -0.539 6.539 18 C -0.131 4.131 19 C -0.058 4.058 20 C 0.181 3.819 21 C -0.224 4.224 22 C 0.149 3.851 23 N -0.528 5.528 24 C 0.297 3.703 25 N -0.519 5.519 26 C 0.031 3.969 27 C 0.178 3.822 28 H 0.255 0.745 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.150 0.850 43 H 0.169 0.831 44 H 0.197 0.803 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -23.813 -16.469 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.003 4.003 15 N -0.381 5.381 16 C 0.298 3.702 17 O -0.415 6.415 18 C -0.172 4.172 19 C -0.096 4.096 20 C 0.034 3.966 21 C -0.246 4.246 22 C -0.016 4.016 23 N -0.242 5.242 24 C 0.009 3.991 25 N -0.233 5.233 26 C -0.098 4.098 27 C 0.052 3.948 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.167 0.833 43 H 0.186 0.814 44 H 0.213 0.787 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.281 -23.244 -16.662 28.918 hybrid contribution 0.944 0.681 -0.047 1.165 sum -3.337 -22.564 -16.708 28.274 Atomic orbital electron populations 1.70019 1.05198 1.25623 1.53861 1.25025 0.95304 0.98346 1.00992 0.86364 0.78889 0.83410 0.78061 1.21140 1.21600 1.20895 1.19148 0.92562 0.84812 1.41861 0.91692 1.44113 1.34147 1.01233 1.52355 1.20968 0.97848 0.86507 0.92519 1.22628 0.89282 0.99493 0.96913 1.61879 1.34644 1.05791 1.23161 1.22196 0.95061 0.96903 0.94254 1.21394 0.98068 0.91012 0.89859 1.45978 1.11644 1.41458 1.39010 1.20546 0.83705 0.83655 0.82278 1.90742 1.29401 1.54348 1.67055 1.21539 0.99063 0.98706 0.97845 1.20380 0.97472 0.97185 0.94570 1.21783 0.88773 0.93386 0.92608 1.22861 1.02752 0.96596 1.02382 1.23269 0.92933 0.97368 0.88073 1.68433 1.06419 1.23333 1.26018 1.25023 0.94401 0.84696 0.94990 1.68260 1.21902 1.29977 1.03164 1.23007 0.98827 0.89202 0.98769 1.20870 0.88990 0.96573 0.88394 0.93526 0.95622 0.92561 0.91997 0.95352 0.90919 0.95003 0.91027 0.90431 0.76762 0.89013 0.87673 0.88237 0.88742 0.83262 0.81426 0.78697 0.95602 0.91768 0.95441 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.15 55.49 0.62 -25.76 16 2 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -7.02 9.63 -15.06 -0.15 -7.16 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.60 -15.11 3.04 -172.02 -0.52 -15.63 16 10 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 11 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -9.12 4.63 -234.32 -1.08 -10.21 16 13 C 0.04 0.58 5.08 -3.83 -0.02 0.56 16 14 C 0.12 1.54 5.61 -4.04 -0.02 1.52 16 15 N -0.73 -7.18 5.56 -60.29 -0.33 -7.52 16 16 C 0.51 5.53 7.83 -10.98 -0.09 5.45 16 17 O -0.54 -8.10 15.98 5.55 0.09 -8.01 16 18 C -0.13 -0.95 5.57 -27.88 -0.16 -1.10 16 19 C -0.06 -0.43 4.94 -27.88 -0.14 -0.57 16 20 C 0.18 1.35 6.21 -82.24 -0.51 0.84 16 21 C -0.22 -1.30 9.80 -39.31 -0.39 -1.69 16 22 C 0.15 0.88 11.30 -17.20 -0.19 0.69 16 23 N -0.53 -4.15 10.44 -14.58 -0.15 -4.30 16 24 C 0.30 2.20 12.28 -92.16 -1.13 1.07 16 25 N -0.52 -4.35 10.03 -10.80 -0.11 -4.46 16 26 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 27 C 0.18 4.32 5.42 -3.60 -0.02 4.30 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 31 H 0.06 0.90 7.99 -51.92 -0.41 0.49 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 34 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.07 1.06 6.40 -51.93 -0.33 0.72 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.40 2.72 8.47 -40.82 -0.35 2.38 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.72 7.98 -51.93 -0.41 0.30 16 40 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 42 H 0.15 0.51 8.01 -52.49 -0.42 0.09 16 43 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.20 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -34.31 390.44 -11.18 -45.49 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.58 Total: -0.55 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.96 Total: 8.35 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.58 Total: -67.87 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.31 -11.18 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316965019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.750 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds