Wall clock time and date at job start Tue Mar 31 2020 18:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48496 * 109.46981 * 240.00104 * 3 2 1 5 5 H 1.48495 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46982 * 120.00069 * 3 2 1 7 7 C 1.38810 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00281 * 197.01282 * 7 2 1 9 9 N 1.36941 * 119.99794 * 17.02040 * 7 2 1 10 10 C 1.47079 * 120.87905 * 206.58400 * 9 7 2 11 11 C 1.53236 * 108.51986 * 231.16041 * 10 9 7 12 12 N 1.46902 * 109.34242 * 306.16956 * 11 10 9 13 13 C 1.46902 * 110.99958 * 187.25581 * 12 11 10 14 14 C 1.52996 * 109.46750 * 170.00400 * 13 12 11 15 15 N 1.46503 * 109.46824 * 180.02562 * 14 13 12 16 16 C 1.34783 * 120.00122 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99742 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99947 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.46885 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47226 * 179.97438 * 19 18 16 21 21 C 1.38628 * 120.44478 * 124.99928 * 20 19 18 22 22 C 1.38581 * 118.39428 * 179.70351 * 21 20 19 23 23 N 1.32346 * 119.10694 * 0.27700 * 22 21 20 24 24 C 1.31779 * 120.81831 * 359.97438 * 23 22 21 25 25 N 1.31806 * 121.75801 * 0.02562 * 24 23 22 26 26 C 1.46896 * 111.26393 * 63.10603 * 12 11 10 27 27 C 1.47080 * 120.88119 * 26.55998 * 9 7 2 28 28 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.62871 * 111.45047 * 10 9 7 30 30 H 1.08997 * 109.78922 * 350.96749 * 10 9 7 31 31 H 1.09009 * 109.49146 * 186.21009 * 11 10 9 32 32 H 1.09000 * 109.49572 * 66.13427 * 11 10 9 33 33 H 1.08995 * 109.47170 * 49.99780 * 13 12 11 34 34 H 1.09001 * 109.46596 * 290.00230 * 13 12 11 35 35 H 1.08995 * 109.47790 * 59.99760 * 14 13 12 36 36 H 1.09001 * 109.47433 * 299.99318 * 14 13 12 37 37 H 0.96999 * 120.00069 * 359.97438 * 15 14 13 38 38 H 1.09003 * 109.47032 * 60.00002 * 18 16 15 39 39 H 1.08997 * 109.47262 * 299.99186 * 18 16 15 40 40 H 1.09001 * 109.47085 * 59.99801 * 19 18 16 41 41 H 1.09007 * 109.47121 * 300.00252 * 19 18 16 42 42 H 1.07993 * 120.80344 * 359.97136 * 21 20 19 43 43 H 1.07999 * 120.44192 * 180.29826 * 22 21 20 44 44 H 1.08001 * 119.12454 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.49672 * 56.86054 * 26 12 11 46 46 H 1.09005 * 109.48802 * 176.93754 * 26 12 11 47 47 H 1.09000 * 109.62794 * 248.54630 * 27 9 7 48 48 H 1.08998 * 109.63163 * 9.13027 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3461 10 6 1.8309 -3.6609 0.1685 11 6 2.0022 -4.6200 -1.0142 12 7 0.7546 -4.6656 -1.7884 13 6 0.8181 -5.7008 -2.8288 14 6 -0.5694 -5.8904 -3.4448 15 7 -0.5062 -6.9232 -4.4819 16 6 -1.6176 -7.2606 -5.1657 17 8 -2.6702 -6.7094 -4.9221 18 6 -1.5524 -8.3225 -6.2330 19 6 -2.9400 -8.5123 -6.8489 20 6 -2.8748 -9.5738 -7.9166 21 6 -3.7175 -10.6734 -7.8663 22 6 -3.6256 -11.6207 -8.8736 23 7 -2.7386 -11.4482 -9.8406 24 6 -1.9501 -10.3925 -9.8531 25 7 -2.0092 -9.4714 -8.9121 26 6 0.4400 -3.3537 -2.3695 27 6 0.2045 -2.3425 -1.2424 28 1 -0.4850 0.8401 0.0004 29 1 1.0920 -4.0628 0.8618 30 1 2.7848 -3.5375 0.6811 31 1 2.2363 -5.6177 -0.6425 32 1 2.8136 -4.2696 -1.6522 33 1 1.1511 -6.6399 -2.3871 34 1 1.5209 -5.3944 -3.6036 35 1 -0.9025 -4.9513 -3.8865 36 1 -1.2722 -6.1968 -2.6700 37 1 0.3357 -7.3637 -4.6770 38 1 -1.2199 -9.2618 -5.7910 39 1 -0.8495 -8.0164 -7.0077 40 1 -3.2730 -7.5732 -7.2907 41 1 -3.6428 -8.8186 -6.0740 42 1 -4.4313 -10.7869 -7.0640 43 1 -4.2694 -12.4879 -8.8697 44 1 -1.2358 -10.2793 -10.6552 45 1 1.2730 -3.0208 -2.9886 46 1 -0.4591 -3.4328 -2.9808 47 1 -0.6907 -2.6177 -0.6847 48 1 0.0841 -1.3449 -1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316965019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:02 Heat of formation + Delta-G solvation = 15.890267 kcal Electronic energy + Delta-G solvation = -27248.977716 eV Core-core repulsion = 23338.650360 eV Total energy + Delta-G solvation = -3910.327356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97621 -40.78981 -39.71557 -36.90792 -35.97767 -35.39427 -33.75487 -33.31060 -32.16082 -31.65574 -30.25974 -27.89003 -26.50986 -25.30193 -24.91164 -24.27075 -23.25556 -22.51358 -21.34182 -20.80947 -18.77115 -18.60680 -18.22841 -17.39134 -17.31221 -16.87861 -16.76779 -16.33120 -16.10265 -16.03536 -15.68228 -15.39631 -15.29385 -15.23035 -14.86878 -14.70103 -14.55030 -14.32389 -13.90074 -13.61564 -13.21529 -13.20143 -12.98907 -12.82130 -12.59747 -12.54652 -12.30799 -12.25582 -12.03940 -11.85746 -11.78900 -11.56386 -11.54157 -11.43280 -10.96149 -10.58584 -10.52655 -10.20968 -10.08852 -9.30728 -8.68989 -7.87863 -5.32755 -0.03940 0.09277 1.46308 1.48737 1.55790 1.64265 2.07042 2.50711 2.81182 3.01731 3.13250 3.27789 3.32058 3.52797 3.67497 3.76172 3.87461 4.06059 4.09533 4.15460 4.20452 4.26147 4.30197 4.34631 4.46797 4.55086 4.61798 4.64983 4.65347 4.70868 4.78875 4.83139 4.93431 4.97658 5.01348 5.04717 5.07481 5.20612 5.36648 5.41115 5.47009 5.60636 5.67109 6.05497 6.13469 6.23040 6.36754 6.55532 7.12562 7.12700 7.26467 7.83751 8.37908 9.18923 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.001598 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.180616 B =17520.046225 C =17774.438709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.543 5.543 13 C 0.054 3.946 14 C 0.129 3.871 15 N -0.716 5.716 16 C 0.511 3.489 17 O -0.586 6.586 18 C -0.117 4.117 19 C -0.054 4.054 20 C 0.167 3.833 21 C -0.220 4.220 22 C 0.145 3.855 23 N -0.548 5.548 24 C 0.286 3.714 25 N -0.538 5.538 26 C 0.050 3.950 27 C 0.185 3.815 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.028 0.972 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.174 0.826 43 H 0.198 0.802 44 H 0.215 0.785 45 H 0.022 0.978 46 H 0.075 0.925 47 H -0.004 1.004 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 -26.305 -17.371 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.268 5.268 13 C -0.074 4.074 14 C 0.004 3.996 15 N -0.369 5.369 16 C 0.298 3.702 17 O -0.466 6.466 18 C -0.157 4.157 19 C -0.093 4.093 20 C 0.022 3.978 21 C -0.242 4.242 22 C -0.020 4.020 23 N -0.262 5.262 24 C -0.001 4.001 25 N -0.253 5.253 26 C -0.079 4.079 27 C 0.059 3.941 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.046 0.954 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.191 0.809 43 H 0.215 0.785 44 H 0.231 0.769 45 H 0.040 0.960 46 H 0.093 0.907 47 H 0.014 0.986 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.743 -25.793 -17.573 31.330 hybrid contribution 0.447 1.367 0.264 1.462 sum -2.295 -24.426 -17.308 30.025 Atomic orbital electron populations 1.70193 1.06743 1.25933 1.55424 1.25822 0.96054 1.01602 1.01312 0.85309 0.77508 0.79071 0.78364 1.20438 1.22114 1.19931 1.19528 0.92979 0.85986 1.41078 0.91240 1.44397 1.34121 1.02298 1.53010 1.21166 0.97570 0.85493 0.94234 1.22473 0.89080 1.00278 0.95263 1.61761 1.34995 1.05244 1.24824 1.22197 0.95121 0.96513 0.93570 1.21099 0.97749 0.90784 0.89945 1.45806 1.12492 1.40590 1.37962 1.21182 0.82968 0.83630 0.82374 1.90729 1.31232 1.56129 1.68529 1.21486 0.99224 0.98323 0.96708 1.20307 0.97726 0.96532 0.94707 1.21833 0.89459 0.93947 0.92585 1.23121 1.02455 0.95720 1.02888 1.23817 0.92617 0.98186 0.87402 1.68480 1.07155 1.23668 1.26936 1.25431 0.94835 0.84539 0.95343 1.68247 1.22711 1.30565 1.03767 1.22607 0.99264 0.89497 0.96560 1.20604 0.87891 0.96334 0.89318 0.94103 0.96699 0.91850 0.88062 0.95387 0.87892 0.93666 0.93386 0.92177 0.74555 0.86549 0.86885 0.90075 0.88300 0.80895 0.78530 0.76870 0.95969 0.90677 0.98582 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.76 11.15 21.65 0.24 -56.52 16 2 C -0.05 -2.99 4.94 84.86 0.42 -2.57 16 3 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.27 -14.84 9.63 84.03 0.81 -14.03 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.61 -31.66 3.04 -698.15 -2.12 -33.78 16 10 C 0.14 5.85 6.69 86.35 0.58 6.43 16 11 C 0.06 1.86 5.62 86.38 0.49 2.35 16 12 N -0.54 -17.75 4.63 -895.26 -4.14 -21.89 16 13 C 0.05 1.23 5.08 86.30 0.44 1.67 16 14 C 0.13 3.13 5.61 86.38 0.48 3.61 16 15 N -0.72 -12.55 5.56 -463.06 -2.57 -15.12 16 16 C 0.51 10.40 7.83 87.66 0.69 11.08 16 17 O -0.59 -17.70 15.98 -3.04 -0.05 -17.75 16 18 C -0.12 -1.47 5.57 29.85 0.17 -1.30 16 19 C -0.05 -0.76 4.94 29.85 0.15 -0.61 16 20 C 0.17 2.27 6.21 42.58 0.26 2.54 16 21 C -0.22 -2.11 9.80 22.44 0.22 -1.89 16 22 C 0.14 1.42 11.30 84.70 0.96 2.37 16 23 N -0.55 -7.82 10.44 -200.05 -2.09 -9.91 16 24 C 0.29 3.93 12.28 180.89 2.22 6.15 16 25 N -0.54 -8.42 10.03 -188.07 -1.89 -10.31 16 26 C 0.05 1.95 5.46 86.38 0.47 2.42 16 27 C 0.18 9.32 5.42 86.35 0.47 9.78 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 31 H 0.10 2.50 7.99 -2.38 -0.02 2.48 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.80 7.97 -2.39 -0.02 1.79 16 34 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 35 H 0.05 1.41 6.40 -2.39 -0.02 1.39 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 4.26 8.47 -92.71 -0.79 3.47 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 1.30 7.98 -2.39 -0.02 1.28 16 40 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.10 1.26 7.90 -2.38 -0.02 1.24 16 42 H 0.17 0.71 8.01 -2.91 -0.02 0.69 16 43 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 44 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 2.74 6.16 -2.38 -0.01 2.72 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.06 3.13 6.12 -2.39 -0.01 3.11 16 Total: -1.00 -77.38 390.44 -1.60 -78.98 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.18 Total: 10.92 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 8.82 Total: 28.00 kcal Atomic # 7 Polarization: -134.96 SS G_CDS: -12.57 Total: -147.53 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -77.38 -1.60 -78.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316965019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.869 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds