Wall clock time and date at job start Tue Mar 31 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99737 * 2 1 4 4 H 1.48500 * 109.47411 * 270.00511 * 3 2 1 5 5 H 1.48505 * 109.47006 * 29.99955 * 3 2 1 6 6 H 1.48501 * 109.47183 * 149.99888 * 3 2 1 7 7 C 1.37872 * 120.00659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00262 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00224 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00133 * 179.97438 * 11 10 9 14 14 N 1.46909 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.46846 * 111.00243 * 66.04838 * 14 13 11 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 13 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.09003 * 109.50448 * 297.71148 * 18 17 16 20 20 C 1.50700 * 109.50204 * 177.59495 * 18 17 16 21 21 N 1.30507 * 126.37117 * 299.69466 * 20 18 17 22 22 N 1.28577 * 109.66531 * 179.76083 * 21 20 18 23 23 C 1.30675 * 109.63377 * 0.40277 * 22 21 20 24 24 N 1.35169 * 107.33444 * 359.85603 * 23 22 21 25 25 C 1.46801 * 111.14895 * 179.76956 * 24 23 22 26 26 C 1.54423 * 105.56283 * 17.03163 * 25 24 23 27 27 C 1.51341 * 142.71789 * 179.97438 * 23 22 21 28 28 C 1.46846 * 111.00162 * 301.83310 * 14 13 11 29 29 H 0.96998 * 120.00507 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47160 * 60.00004 * 9 7 2 31 31 H 1.08998 * 109.46962 * 300.00059 * 9 7 2 32 32 H 0.97004 * 119.99761 * 359.97438 * 10 9 7 33 33 H 1.09000 * 109.46932 * 60.00534 * 13 11 10 34 34 H 1.08998 * 109.47176 * 299.99955 * 13 11 10 35 35 H 1.08998 * 109.45759 * 294.17597 * 15 14 13 36 36 H 1.09004 * 109.46280 * 54.13953 * 15 14 13 37 37 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 38 38 H 1.09002 * 109.50237 * 299.19577 * 16 15 14 39 39 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 40 40 H 1.08996 * 109.51997 * 182.43867 * 17 16 15 41 41 H 1.09003 * 110.22849 * 136.05337 * 25 24 23 42 42 H 1.09003 * 110.23114 * 258.00771 * 25 24 23 43 43 H 1.09003 * 110.95957 * 92.51786 * 26 25 24 44 44 H 1.08995 * 110.96341 * 216.25892 * 26 25 24 45 45 H 1.09004 * 110.47243 * 44.76116 * 27 23 22 46 46 H 1.08998 * 110.47852 * 282.15330 * 27 23 22 47 47 H 1.08999 * 109.46373 * 305.86398 * 28 14 13 48 48 H 1.08998 * 109.45881 * 65.82485 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 7 4.0001 -2.5750 -0.0022 11 6 5.3251 -2.8212 -0.0034 12 8 6.1132 -1.8994 -0.0031 13 6 5.8275 -4.2420 -0.0040 14 7 7.2966 -4.2419 -0.0047 15 6 7.8234 -3.6855 1.2480 16 6 9.3463 -3.8345 1.2732 17 6 9.9463 -3.0967 0.0732 18 6 9.3450 -3.6624 -1.2164 19 1 9.6083 -4.7161 -1.3091 20 6 9.8860 -2.9019 -2.3996 21 7 9.7544 -1.6229 -2.6235 22 7 10.3447 -1.3130 -3.7229 23 6 10.8728 -2.3835 -4.2546 24 7 10.5953 -3.4202 -3.4327 25 6 11.1492 -4.6746 -3.9569 26 6 12.1969 -4.2562 -5.0114 27 6 11.6738 -2.8676 -5.4439 28 6 7.8222 -3.5184 -1.1695 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6802 0.8888 31 1 3.8745 -0.6798 -0.8911 32 1 3.3697 -3.3124 -0.0021 33 1 5.4635 -4.7558 -0.8938 34 1 5.4650 -4.7559 0.8862 35 1 7.5605 -2.6299 1.3154 36 1 7.3920 -4.2217 2.0933 37 1 9.7385 -3.4073 2.1962 38 1 9.6095 -4.8909 1.2205 39 1 9.7162 -2.0339 0.1468 40 1 11.0273 -3.2365 0.0630 41 1 11.6256 -5.2400 -3.1559 42 1 10.3626 -5.2686 -4.4222 43 1 13.1885 -4.1774 -4.5658 44 1 12.2028 -4.9501 -5.8519 45 1 12.5057 -2.1922 -5.6436 46 1 11.0352 -2.9576 -6.3226 47 1 7.3899 -3.9332 -2.0801 48 1 7.5594 -2.4636 -1.0907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318318723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:18 Heat of formation + Delta-G solvation = 56.128863 kcal Electronic energy + Delta-G solvation = -29100.349408 eV Core-core repulsion = 25191.766928 eV Total energy + Delta-G solvation = -3908.582480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53922 -40.02964 -37.97418 -37.46941 -34.49344 -33.90412 -32.57548 -32.33811 -31.23134 -29.47650 -28.75269 -27.60476 -26.64948 -23.96410 -23.33674 -22.88229 -21.87617 -21.32067 -20.83258 -19.92155 -19.50719 -17.38427 -17.32654 -16.64737 -16.09547 -15.93357 -15.32303 -15.03779 -14.96457 -14.76323 -14.68876 -14.27878 -14.08642 -13.89284 -13.62855 -13.53771 -13.40927 -13.02624 -12.57480 -12.49701 -12.25822 -12.21517 -12.15249 -11.93899 -11.69838 -11.42340 -11.12903 -10.97753 -10.86422 -10.72259 -10.58680 -10.55386 -10.31394 -10.24792 -9.98381 -9.87600 -9.47945 -9.07519 -8.76345 -8.14552 -7.91529 -6.20619 -4.23004 1.64305 2.19916 2.78293 3.15162 3.29637 3.36096 3.38391 3.45238 3.77673 3.92070 4.01182 4.12469 4.20854 4.33457 4.35353 4.64973 4.73331 4.77832 4.85179 4.97552 5.05342 5.07937 5.14787 5.17092 5.26491 5.33418 5.38779 5.42144 5.44405 5.49170 5.58113 5.59714 5.81310 5.84205 5.91879 6.04259 6.07051 6.11828 6.30070 6.46882 6.65584 6.80154 6.97420 7.05901 7.08750 7.23776 7.40632 8.12121 8.50548 8.69501 8.74749 8.91235 9.39786 10.91214 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002809 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.325147 B = 9964.765676 C =11009.998798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.703 5.703 11 C 0.465 3.535 12 O -0.550 6.550 13 C 0.034 3.966 14 N -0.514 5.514 15 C 0.036 3.964 16 C -0.109 4.109 17 C -0.108 4.108 18 C 0.010 3.990 19 H 0.085 0.915 20 C 0.208 3.792 21 N -0.273 5.273 22 N -0.280 5.280 23 C 0.145 3.855 24 N -0.496 5.496 25 C 0.102 3.898 26 C -0.129 4.129 27 C -0.039 4.039 28 C 0.043 3.957 29 H 0.268 0.732 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.396 0.604 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.063 0.937 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.983 -16.243 -6.778 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.351 5.351 11 C 0.249 3.751 12 O -0.430 6.430 13 C -0.098 4.098 14 N -0.236 5.236 15 C -0.091 4.091 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.011 4.011 19 H 0.103 0.897 20 C -0.058 4.058 21 N -0.112 5.112 22 N -0.120 5.120 23 C -0.122 4.122 24 N -0.188 5.188 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.078 4.078 28 C -0.085 4.085 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.230 0.770 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.082 0.918 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 26.043 -14.564 -6.484 30.535 hybrid contribution -0.095 -0.009 -0.206 0.227 sum 25.949 -14.573 -6.690 30.503 Atomic orbital electron populations 1.69876 1.06210 1.27439 1.49463 1.24795 0.94788 0.99191 0.93816 0.86823 0.80556 0.83210 0.79148 1.19809 1.20891 1.18508 1.21089 0.88546 0.95186 1.53346 0.90287 1.19484 0.95228 0.78856 0.96734 1.46334 1.05995 1.11048 1.71744 1.21869 0.83450 0.92290 0.77514 1.90587 1.54697 1.46639 1.51097 1.22268 0.88762 0.93914 1.04859 1.62364 1.04903 1.53302 1.03063 1.22316 0.94683 1.00877 0.91243 1.21521 0.95072 1.00531 0.97577 1.21582 0.98962 1.01498 0.92628 1.19556 0.95978 0.97190 0.88382 0.89662 1.24512 0.97728 0.91591 0.91949 1.74529 1.17981 1.09062 1.09616 1.74053 1.11391 1.22519 1.04049 1.25938 1.03684 0.85962 0.96640 1.47250 1.41561 1.11458 1.18569 1.22390 0.97474 0.84178 0.97981 1.22804 0.98713 0.96510 0.98664 1.20624 0.98701 0.95861 0.92654 1.22389 0.91411 1.02022 0.92714 0.92262 0.95761 0.96215 0.77025 0.88078 0.87833 0.91360 0.91087 0.91130 0.91526 0.90321 0.92242 0.88672 0.88707 0.89269 0.87759 0.88024 0.88125 0.91807 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 10 N -0.70 -14.13 5.55 -61.47 -0.34 -14.47 16 11 C 0.46 8.59 7.25 -10.99 -0.08 8.51 16 12 O -0.55 -12.10 11.62 5.55 0.06 -12.03 16 13 C 0.03 0.45 5.86 -4.97 -0.03 0.42 16 14 N -0.51 -6.79 4.86 -236.11 -1.15 -7.94 16 15 C 0.04 0.48 5.10 -3.84 -0.02 0.46 16 16 C -0.11 -1.16 6.09 -26.65 -0.16 -1.32 16 17 C -0.11 -1.29 5.27 -26.61 -0.14 -1.43 16 18 C 0.01 0.13 2.82 -91.69 -0.26 -0.13 16 19 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.21 2.93 6.82 -154.89 -1.06 1.87 16 21 N -0.27 -4.86 12.21 32.82 0.40 -4.46 16 22 N -0.28 -4.72 12.22 32.93 0.40 -4.31 16 23 C 0.15 1.75 8.69 -154.84 -1.35 0.41 16 24 N -0.50 -5.39 3.62 -109.38 -0.40 -5.79 16 25 C 0.10 0.54 7.77 -3.13 -0.02 0.52 16 26 C -0.13 -0.39 7.17 -25.16 -0.18 -0.57 16 27 C -0.04 -0.23 6.85 -26.75 -0.18 -0.41 16 28 C 0.04 0.63 4.24 -3.84 -0.02 0.61 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 32 H 0.40 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 35 H 0.07 1.13 6.00 -51.93 -0.31 0.82 16 36 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 48 H 0.10 1.86 5.36 -51.93 -0.28 1.58 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -37.16 378.54 -10.77 -47.93 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.61 Total: 2.94 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -3.95 Total: 1.08 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.31 Total: -63.06 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.06 Total: -12.03 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.16 -10.77 -47.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318318723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.058 kcal (2) G-P(sol) polarization free energy of solvation -37.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds