Wall clock time and date at job start Tue Mar 31 2020 17:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99737 * 2 1 4 4 H 1.48500 * 109.47411 * 270.00511 * 3 2 1 5 5 H 1.48505 * 109.47006 * 29.99955 * 3 2 1 6 6 H 1.48501 * 109.47183 * 149.99888 * 3 2 1 7 7 C 1.37872 * 120.00659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00262 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00224 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00133 * 179.97438 * 11 10 9 14 14 N 1.46909 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.46846 * 111.00243 * 66.04838 * 14 13 11 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 13 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.09003 * 109.50448 * 297.71148 * 18 17 16 20 20 C 1.50700 * 109.50204 * 177.59495 * 18 17 16 21 21 N 1.30507 * 126.37117 * 299.69466 * 20 18 17 22 22 N 1.28577 * 109.66531 * 179.76083 * 21 20 18 23 23 C 1.30675 * 109.63377 * 0.40277 * 22 21 20 24 24 N 1.35169 * 107.33444 * 359.85603 * 23 22 21 25 25 C 1.46801 * 111.14895 * 179.76956 * 24 23 22 26 26 C 1.54423 * 105.56283 * 17.03163 * 25 24 23 27 27 C 1.51341 * 142.71789 * 179.97438 * 23 22 21 28 28 C 1.46846 * 111.00162 * 301.83310 * 14 13 11 29 29 H 0.96998 * 120.00507 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47160 * 60.00004 * 9 7 2 31 31 H 1.08998 * 109.46962 * 300.00059 * 9 7 2 32 32 H 0.97004 * 119.99761 * 359.97438 * 10 9 7 33 33 H 1.09000 * 109.46932 * 60.00534 * 13 11 10 34 34 H 1.08998 * 109.47176 * 299.99955 * 13 11 10 35 35 H 1.08998 * 109.45759 * 294.17597 * 15 14 13 36 36 H 1.09004 * 109.46280 * 54.13953 * 15 14 13 37 37 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 38 38 H 1.09002 * 109.50237 * 299.19577 * 16 15 14 39 39 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 40 40 H 1.08996 * 109.51997 * 182.43867 * 17 16 15 41 41 H 1.09003 * 110.22849 * 136.05337 * 25 24 23 42 42 H 1.09003 * 110.23114 * 258.00771 * 25 24 23 43 43 H 1.09003 * 110.95957 * 92.51786 * 26 25 24 44 44 H 1.08995 * 110.96341 * 216.25892 * 26 25 24 45 45 H 1.09004 * 110.47243 * 44.76116 * 27 23 22 46 46 H 1.08998 * 110.47852 * 282.15330 * 27 23 22 47 47 H 1.08999 * 109.46373 * 305.86398 * 28 14 13 48 48 H 1.08998 * 109.45881 * 65.82485 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 7 4.0001 -2.5750 -0.0022 11 6 5.3251 -2.8212 -0.0034 12 8 6.1132 -1.8994 -0.0031 13 6 5.8275 -4.2420 -0.0040 14 7 7.2966 -4.2419 -0.0047 15 6 7.8234 -3.6855 1.2480 16 6 9.3463 -3.8345 1.2732 17 6 9.9463 -3.0967 0.0732 18 6 9.3450 -3.6624 -1.2164 19 1 9.6083 -4.7161 -1.3091 20 6 9.8860 -2.9019 -2.3996 21 7 9.7544 -1.6229 -2.6235 22 7 10.3447 -1.3130 -3.7229 23 6 10.8728 -2.3835 -4.2546 24 7 10.5953 -3.4202 -3.4327 25 6 11.1492 -4.6746 -3.9569 26 6 12.1969 -4.2562 -5.0114 27 6 11.6738 -2.8676 -5.4439 28 6 7.8222 -3.5184 -1.1695 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6802 0.8888 31 1 3.8745 -0.6798 -0.8911 32 1 3.3697 -3.3124 -0.0021 33 1 5.4635 -4.7558 -0.8938 34 1 5.4650 -4.7559 0.8862 35 1 7.5605 -2.6299 1.3154 36 1 7.3920 -4.2217 2.0933 37 1 9.7385 -3.4073 2.1962 38 1 9.6095 -4.8909 1.2205 39 1 9.7162 -2.0339 0.1468 40 1 11.0273 -3.2365 0.0630 41 1 11.6256 -5.2400 -3.1559 42 1 10.3626 -5.2686 -4.4222 43 1 13.1885 -4.1774 -4.5658 44 1 12.2028 -4.9501 -5.8519 45 1 12.5057 -2.1922 -5.6436 46 1 11.0352 -2.9576 -6.3226 47 1 7.3899 -3.9332 -2.0801 48 1 7.5594 -2.4636 -1.0907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318318723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:17 Heat of formation + Delta-G solvation = 27.972449 kcal Electronic energy + Delta-G solvation = -29101.570362 eV Core-core repulsion = 25191.766928 eV Total energy + Delta-G solvation = -3909.803433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.45066 -41.35867 -39.21377 -38.16992 -36.23838 -35.08772 -34.45993 -33.43749 -32.03124 -30.57825 -30.23358 -28.38672 -28.05439 -24.99919 -24.70904 -23.58906 -23.37442 -22.16575 -21.82652 -21.41300 -20.52641 -19.18819 -18.05102 -17.85013 -17.52724 -17.11630 -16.64709 -16.54488 -16.03297 -15.94682 -15.68920 -15.60501 -15.12369 -14.99620 -14.68014 -14.59466 -14.30495 -14.11855 -14.05679 -13.96323 -13.53760 -13.40191 -13.07305 -12.81506 -12.77590 -12.56407 -12.45825 -12.25638 -12.13820 -11.99651 -11.79808 -11.70293 -11.65043 -11.52723 -11.37278 -11.28825 -10.96706 -10.95953 -10.09496 -9.92247 -9.21600 -8.45299 -6.51440 0.75450 1.25764 1.28750 1.41108 1.48503 1.67903 1.75233 2.22074 2.48693 2.69009 2.87878 2.89968 3.30184 3.47062 3.66674 3.73667 3.87091 3.95505 3.99669 4.07528 4.13159 4.28195 4.37376 4.40787 4.47800 4.50467 4.51413 4.56859 4.67914 4.74003 4.81514 4.84722 4.88471 4.95100 4.97404 5.00572 5.03495 5.09341 5.10160 5.16995 5.22346 5.23068 5.41700 5.56675 5.83701 5.87298 5.96916 6.05671 6.49694 6.81915 7.11715 7.41248 7.69588 8.69294 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002809 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.325147 B = 9964.765676 C =11009.998798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.705 5.705 11 C 0.461 3.539 12 O -0.586 6.586 13 C 0.042 3.958 14 N -0.495 5.495 15 C 0.033 3.967 16 C -0.100 4.100 17 C -0.105 4.105 18 C 0.020 3.980 19 H 0.118 0.882 20 C 0.202 3.798 21 N -0.335 5.335 22 N -0.346 5.346 23 C 0.150 3.850 24 N -0.493 5.493 25 C 0.087 3.913 26 C -0.111 4.111 27 C -0.041 4.041 28 C 0.049 3.951 29 H 0.273 0.727 30 H 0.008 0.992 31 H 0.001 0.999 32 H 0.410 0.590 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.515 -19.856 -7.420 35.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.109 3.891 10 N -0.355 5.355 11 C 0.248 3.752 12 O -0.468 6.468 13 C -0.089 4.089 14 N -0.216 5.216 15 C -0.094 4.094 16 C -0.137 4.137 17 C -0.143 4.143 18 C -0.001 4.001 19 H 0.136 0.864 20 C -0.067 4.067 21 N -0.174 5.174 22 N -0.186 5.186 23 C -0.119 4.119 24 N -0.184 5.184 25 C -0.032 4.032 26 C -0.149 4.149 27 C -0.080 4.080 28 C -0.080 4.080 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.019 0.981 32 H 0.246 0.754 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.043 0.957 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.159 0.841 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 28.593 -18.227 -7.133 34.651 hybrid contribution -0.841 1.046 -0.067 1.343 sum 27.752 -17.182 -7.200 33.425 Atomic orbital electron populations 1.69959 1.07435 1.28573 1.50677 1.25523 0.95504 1.02332 0.93700 0.85944 0.79187 0.79988 0.79242 1.19490 1.19316 1.19101 1.21289 0.89833 0.94648 1.52450 0.91833 1.19003 0.93452 0.81640 0.94983 1.46195 1.07247 1.09368 1.72692 1.22978 0.82171 0.94414 0.75678 1.90621 1.55434 1.48641 1.52101 1.22500 0.88700 0.90068 1.07675 1.62490 1.04606 1.51865 1.02664 1.22384 0.96761 0.98541 0.91749 1.21506 0.92961 1.01984 0.97288 1.21534 1.00157 0.99258 0.93385 1.19560 0.94033 0.98592 0.87928 0.86365 1.24665 0.97954 0.91040 0.93028 1.74380 1.20097 1.11844 1.11063 1.73871 1.14096 1.25528 1.05098 1.26997 1.01966 0.85170 0.97813 1.47588 1.40455 1.13172 1.17201 1.22971 0.98644 0.82259 0.99356 1.22894 0.98139 0.94823 0.99046 1.21016 0.98552 0.97736 0.90725 1.22198 0.93433 0.99111 0.93278 0.91777 0.97424 0.98142 0.75442 0.85486 0.84483 0.95674 0.88976 0.89985 0.88681 0.94440 0.90460 0.86530 0.87074 0.88198 0.84111 0.86877 0.86616 0.91859 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.96 21.44 0.30 -56.23 16 2 C 0.03 1.76 5.47 84.65 0.46 2.22 16 3 Si 0.93 46.56 27.47 68.60 1.88 48.44 16 4 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -13.45 6.54 99.48 0.65 -12.80 16 7 C -0.54 -30.92 9.83 25.60 0.25 -30.67 16 8 H 0.06 3.73 7.84 -2.91 -0.02 3.71 16 9 C 0.23 12.02 4.50 85.63 0.38 12.41 16 10 N -0.70 -28.65 5.55 -466.79 -2.59 -31.24 16 11 C 0.46 17.19 7.25 87.66 0.64 17.83 16 12 O -0.59 -27.09 11.62 -3.05 -0.04 -27.13 16 13 C 0.04 1.03 5.86 85.56 0.50 1.53 16 14 N -0.49 -12.17 4.86 -900.93 -4.38 -16.55 16 15 C 0.03 0.83 5.10 86.33 0.44 1.27 16 16 C -0.10 -1.91 6.09 30.65 0.19 -1.72 16 17 C -0.10 -2.47 5.27 30.67 0.16 -2.31 16 18 C 0.02 0.48 2.82 -11.49 -0.03 0.44 16 19 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 20 C 0.20 5.75 6.82 137.94 0.94 6.69 16 21 N -0.34 -12.85 12.21 -50.09 -0.61 -13.46 16 22 N -0.35 -12.43 12.22 -49.74 -0.61 -13.04 16 23 C 0.15 3.58 8.69 138.24 1.20 4.78 16 24 N -0.49 -10.07 3.62 -499.98 -1.81 -11.88 16 25 C 0.09 0.59 7.77 86.81 0.67 1.27 16 26 C -0.11 -0.17 7.17 31.61 0.23 0.05 16 27 C -0.04 -0.38 6.85 30.58 0.21 -0.17 16 28 C 0.05 1.43 4.24 86.32 0.37 1.80 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 31 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16 32 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 33 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.14 2.53 8.06 -2.39 -0.02 2.51 16 35 H 0.02 0.86 6.00 -2.39 -0.01 0.85 16 36 H 0.09 1.90 8.06 -2.39 -0.02 1.88 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.14 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 48 H 0.05 1.96 5.36 -2.39 -0.01 1.95 16 Total: -1.00 -89.12 378.54 -1.09 -90.21 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.15 Total: 15.45 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.61 Total: 15.42 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -9.70 Total: -142.39 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.04 Total: -27.13 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -89.12 -1.09 -90.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318318723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.185 kcal (2) G-P(sol) polarization free energy of solvation -89.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds