Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99648 * 2 1 4 4 H 1.48493 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47512 * 299.99930 * 3 2 1 6 6 H 1.48500 * 109.47279 * 59.99867 * 3 2 1 7 7 C 1.37877 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99626 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00514 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99447 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.46741 * 180.02562 * 13 11 10 15 15 C 1.46962 * 111.00455 * 58.23211 * 14 13 11 16 16 C 1.53463 * 109.74520 * 165.12770 * 15 14 13 17 17 N 1.46307 * 108.17887 * 49.59197 * 16 15 14 18 18 C 1.35941 * 123.86136 * 343.75743 * 17 16 15 19 19 N 1.29636 * 107.35655 * 179.73078 * 18 17 16 20 20 N 1.28981 * 109.47304 * 0.12110 * 19 18 17 21 21 C 1.30924 * 109.75617 * 359.95838 * 20 19 18 22 22 C 1.50694 * 126.48064 * 179.97438 * 21 20 19 23 23 C 1.54272 * 110.03393 * 57.19306 * 22 21 20 24 24 C 1.54892 * 104.19723 * 217.10222 * 23 22 21 25 25 C 1.54892 * 102.74639 * 37.94140 * 24 23 22 26 26 C 1.53877 * 110.03466 * 300.02393 * 22 21 20 27 27 C 1.47384 * 110.99926 * 293.95004 * 14 13 11 28 28 H 0.96999 * 120.00423 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46922 * 60.00397 * 9 7 2 30 30 H 1.08998 * 109.47399 * 300.00336 * 9 7 2 31 31 H 0.96999 * 119.99694 * 0.02562 * 10 9 7 32 32 H 1.08997 * 109.47195 * 60.00346 * 13 11 10 33 33 H 1.09003 * 109.46804 * 300.00180 * 13 11 10 34 34 H 1.09005 * 109.42401 * 285.20729 * 15 14 13 35 35 H 1.09000 * 109.42741 * 45.04088 * 15 14 13 36 36 H 1.08997 * 109.71457 * 289.91969 * 16 15 14 37 37 H 1.09002 * 109.72420 * 169.26852 * 16 15 14 38 38 H 1.09007 * 110.02009 * 178.63435 * 22 21 20 39 39 H 1.08992 * 110.48522 * 335.78232 * 23 22 21 40 40 H 1.09001 * 110.48483 * 98.42259 * 23 22 21 41 41 H 1.09000 * 110.75677 * 279.62705 * 24 23 22 42 42 H 1.08997 * 110.91503 * 156.33053 * 24 23 22 43 43 H 1.08997 * 110.48360 * 203.38194 * 25 24 23 44 44 H 1.08997 * 110.59697 * 80.79149 * 25 24 23 45 45 H 1.09001 * 110.03304 * 238.56687 * 26 22 21 46 46 H 1.08991 * 110.03164 * 0.02562 * 26 22 21 47 47 H 1.09010 * 109.75367 * 54.57756 * 27 14 13 48 48 H 1.08998 * 109.76149 * 293.83817 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5618 -5.1050 -0.0006 13 6 2.7335 -6.0287 -0.0022 14 7 1.9990 -7.3009 -0.0023 15 6 1.1097 -7.3956 -1.1684 16 6 0.6455 -8.8471 -1.3499 17 7 0.1536 -9.3336 -0.0608 18 6 0.4143 -8.7267 1.1274 19 7 -0.1766 -9.4169 2.0520 20 7 -0.7880 -10.4185 1.5165 21 6 -0.6094 -10.4040 0.2196 22 6 -1.1563 -11.3989 -0.7713 23 6 -2.6940 -11.4613 -0.6635 24 6 -3.0300 -12.9570 -0.8854 25 6 -1.8744 -13.6797 -0.1495 26 6 -0.6352 -12.8094 -0.4445 27 6 1.2516 -7.4794 1.2554 28 1 -0.4851 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 3.1569 -3.4353 -0.0021 32 1 3.3607 -5.9710 0.8874 33 1 3.3595 -5.9708 -0.8926 34 1 0.2418 -6.7540 -1.0155 35 1 1.6459 -7.0722 -2.0606 36 1 1.4825 -9.4622 -1.6802 37 1 -0.1553 -8.8876 -2.0883 38 1 -0.8633 -11.1178 -1.7829 39 1 -3.0205 -11.1396 0.3253 40 1 -3.1558 -10.8478 -1.4371 41 1 -3.0238 -13.2009 -1.9477 42 1 -3.9911 -13.2104 -0.4381 43 1 -1.7381 -14.6850 -0.5480 44 1 -2.0672 -13.7181 0.9226 45 1 -0.0900 -13.2130 -1.2977 46 1 0.0130 -12.7743 0.4311 47 1 0.6057 -6.6179 1.4256 48 1 1.9489 -7.5876 2.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319867240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = 40.876111 kcal Electronic energy + Delta-G solvation = -28723.097013 eV Core-core repulsion = 24813.853124 eV Total energy + Delta-G solvation = -3909.243889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.30414 -39.87521 -38.32380 -37.29249 -34.72688 -34.21786 -32.51494 -31.85865 -30.39913 -29.22423 -28.99010 -27.84571 -26.63703 -24.84701 -23.44665 -22.58929 -22.19848 -20.93661 -20.07603 -19.80852 -19.63272 -17.52509 -17.19351 -16.71074 -16.23056 -15.93772 -15.77179 -15.50315 -15.26229 -14.90461 -14.76042 -14.45077 -14.02009 -13.78864 -13.68062 -13.58313 -12.98742 -12.67572 -12.34804 -12.10353 -12.03694 -11.91180 -11.79073 -11.62708 -11.40589 -11.37777 -11.35340 -11.27482 -11.06486 -11.03723 -10.96697 -10.84801 -10.44623 -10.27106 -10.10065 -10.04592 -9.49250 -8.98473 -8.84528 -8.20878 -8.06960 -6.26431 -4.34264 1.83619 2.42386 2.88818 3.04201 3.17021 3.24460 3.27050 3.44404 3.87639 3.97402 4.23314 4.27339 4.30010 4.33982 4.37783 4.70976 4.73807 4.85281 4.96884 5.07353 5.10104 5.14988 5.20600 5.24675 5.26833 5.34395 5.36018 5.39589 5.41235 5.55640 5.63700 5.65251 5.68652 5.78687 5.85764 5.91051 5.95712 6.04878 6.10202 6.20290 6.51516 6.60331 6.88750 7.14521 7.23336 7.36875 7.53055 7.85106 8.41366 8.62293 8.79815 8.87684 9.32789 10.83576 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.002098 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.011449 B =13344.257719 C =13603.388802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.705 5.705 11 C 0.464 3.536 12 O -0.558 6.558 13 C 0.034 3.966 14 N -0.517 5.517 15 C 0.019 3.981 16 C 0.112 3.888 17 N -0.465 5.465 18 C 0.193 3.807 19 N -0.293 5.293 20 N -0.295 5.295 21 C 0.182 3.818 22 C -0.002 4.002 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.111 4.111 27 C 0.126 3.874 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.393 0.607 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 -23.465 -5.763 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.248 3.752 12 O -0.439 6.439 13 C -0.098 4.098 14 N -0.240 5.240 15 C -0.109 4.109 16 C -0.011 4.011 17 N -0.155 5.155 18 C -0.075 4.075 19 N -0.132 5.132 20 N -0.136 5.136 21 C -0.086 4.086 22 C -0.023 4.023 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.150 4.150 27 C -0.003 4.003 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.226 0.774 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.116 0.884 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.407 -24.280 -4.448 24.724 hybrid contribution 0.829 2.283 -1.290 2.751 sum 2.236 -21.996 -5.737 22.842 Atomic orbital electron populations 1.69978 1.06142 1.27350 1.48699 1.24968 0.94931 0.99577 0.94571 0.86346 0.79812 0.82846 0.77829 1.19587 1.20766 1.20728 1.21244 0.93311 0.90389 1.53472 0.91773 1.19136 0.88301 0.82075 0.97738 1.46609 1.11367 1.06375 1.70864 1.21670 0.90180 0.85451 0.77919 1.90593 1.17060 1.84418 1.51811 1.22320 0.96122 0.85684 1.05660 1.62554 1.27789 1.31446 1.02207 1.22768 0.99374 0.94200 0.94576 1.22155 0.99909 0.96543 0.82542 1.45939 1.38770 1.21257 1.09557 1.24567 1.02057 0.99034 0.81871 1.73973 1.11033 1.02752 1.25464 1.74459 1.19889 1.15642 1.03565 1.24425 0.97512 0.91377 0.95267 1.20215 0.96159 0.91629 0.94329 1.22444 0.92499 0.97142 1.03190 1.22477 0.98670 0.94490 1.00361 1.22339 0.94249 0.98176 1.01153 1.22155 0.98371 0.92474 1.01970 1.20880 0.95202 0.91234 0.93020 0.92405 0.95561 0.95466 0.77449 0.87316 0.87291 0.88965 0.88472 0.88987 0.88636 0.89652 0.90094 0.91336 0.91452 0.91167 0.91602 0.90997 0.91334 0.90968 0.88428 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.55 -14.17 9.28 -34.44 -0.32 -14.49 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.19 5.43 -5.19 -0.03 6.16 16 10 N -0.70 -13.15 5.55 -61.47 -0.34 -13.49 16 11 C 0.46 7.80 7.17 -10.98 -0.08 7.72 16 12 O -0.56 -11.46 11.77 5.57 0.07 -11.40 16 13 C 0.03 0.38 5.80 -4.97 -0.03 0.35 16 14 N -0.52 -6.24 4.86 -236.69 -1.15 -7.39 16 15 C 0.02 0.22 4.84 -3.55 -0.02 0.20 16 16 C 0.11 1.09 6.82 -3.91 -0.03 1.07 16 17 N -0.46 -6.15 3.12 -110.80 -0.35 -6.50 16 18 C 0.19 3.01 7.86 -155.27 -1.22 1.79 16 19 N -0.29 -5.19 12.20 32.76 0.40 -4.79 16 20 N -0.30 -4.87 12.02 32.66 0.39 -4.48 16 21 C 0.18 2.41 6.30 -155.64 -0.98 1.43 16 22 C 0.00 -0.02 3.36 -90.65 -0.30 -0.33 16 23 C -0.11 -1.02 6.35 -25.07 -0.16 -1.18 16 24 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 25 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 26 C -0.11 -0.93 6.45 -25.61 -0.17 -1.09 16 27 C 0.13 1.78 5.61 -4.67 -0.03 1.75 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.39 6.14 8.32 -40.82 -0.34 5.80 16 32 H 0.11 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.11 0.98 8.12 -51.93 -0.42 0.55 16 34 H 0.09 1.42 5.68 -51.93 -0.30 1.12 16 35 H 0.10 0.93 7.99 -51.93 -0.42 0.52 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 38 H 0.09 0.63 7.62 -51.93 -0.40 0.24 16 39 H 0.08 0.91 7.67 -51.93 -0.40 0.51 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.75 7.66 -51.93 -0.40 0.35 16 47 H 0.10 1.65 5.85 -51.92 -0.30 1.35 16 48 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -33.65 380.51 -10.89 -44.54 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.57 Total: 4.31 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.80 Total: 2.89 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.31 Total: -61.34 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.65 -10.89 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319867240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.420 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds