Wall clock time and date at job start Tue Mar 31 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99648 * 2 1 4 4 H 1.48493 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47512 * 299.99930 * 3 2 1 6 6 H 1.48500 * 109.47279 * 59.99867 * 3 2 1 7 7 C 1.37877 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99626 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00514 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99447 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.46741 * 180.02562 * 13 11 10 15 15 C 1.46962 * 111.00455 * 58.23211 * 14 13 11 16 16 C 1.53463 * 109.74520 * 165.12770 * 15 14 13 17 17 N 1.46307 * 108.17887 * 49.59197 * 16 15 14 18 18 C 1.35941 * 123.86136 * 343.75743 * 17 16 15 19 19 N 1.29636 * 107.35655 * 179.73078 * 18 17 16 20 20 N 1.28981 * 109.47304 * 0.12110 * 19 18 17 21 21 C 1.30924 * 109.75617 * 359.95838 * 20 19 18 22 22 C 1.50694 * 126.48064 * 179.97438 * 21 20 19 23 23 C 1.54272 * 110.03393 * 57.19306 * 22 21 20 24 24 C 1.54892 * 104.19723 * 217.10222 * 23 22 21 25 25 C 1.54892 * 102.74639 * 37.94140 * 24 23 22 26 26 C 1.53877 * 110.03466 * 300.02393 * 22 21 20 27 27 C 1.47384 * 110.99926 * 293.95004 * 14 13 11 28 28 H 0.96999 * 120.00423 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46922 * 60.00397 * 9 7 2 30 30 H 1.08998 * 109.47399 * 300.00336 * 9 7 2 31 31 H 0.96999 * 119.99694 * 0.02562 * 10 9 7 32 32 H 1.08997 * 109.47195 * 60.00346 * 13 11 10 33 33 H 1.09003 * 109.46804 * 300.00180 * 13 11 10 34 34 H 1.09005 * 109.42401 * 285.20729 * 15 14 13 35 35 H 1.09000 * 109.42741 * 45.04088 * 15 14 13 36 36 H 1.08997 * 109.71457 * 289.91969 * 16 15 14 37 37 H 1.09002 * 109.72420 * 169.26852 * 16 15 14 38 38 H 1.09007 * 110.02009 * 178.63435 * 22 21 20 39 39 H 1.08992 * 110.48522 * 335.78232 * 23 22 21 40 40 H 1.09001 * 110.48483 * 98.42259 * 23 22 21 41 41 H 1.09000 * 110.75677 * 279.62705 * 24 23 22 42 42 H 1.08997 * 110.91503 * 156.33053 * 24 23 22 43 43 H 1.08997 * 110.48360 * 203.38194 * 25 24 23 44 44 H 1.08997 * 110.59697 * 80.79149 * 25 24 23 45 45 H 1.09001 * 110.03304 * 238.56687 * 26 22 21 46 46 H 1.08991 * 110.03164 * 0.02562 * 26 22 21 47 47 H 1.09010 * 109.75367 * 54.57756 * 27 14 13 48 48 H 1.08998 * 109.76149 * 293.83817 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5618 -5.1050 -0.0006 13 6 2.7335 -6.0287 -0.0022 14 7 1.9990 -7.3009 -0.0023 15 6 1.1097 -7.3956 -1.1684 16 6 0.6455 -8.8471 -1.3499 17 7 0.1536 -9.3336 -0.0608 18 6 0.4143 -8.7267 1.1274 19 7 -0.1766 -9.4169 2.0520 20 7 -0.7880 -10.4185 1.5165 21 6 -0.6094 -10.4040 0.2196 22 6 -1.1563 -11.3989 -0.7713 23 6 -2.6940 -11.4613 -0.6635 24 6 -3.0300 -12.9570 -0.8854 25 6 -1.8744 -13.6797 -0.1495 26 6 -0.6352 -12.8094 -0.4445 27 6 1.2516 -7.4794 1.2554 28 1 -0.4851 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 3.1569 -3.4353 -0.0021 32 1 3.3607 -5.9710 0.8874 33 1 3.3595 -5.9708 -0.8926 34 1 0.2418 -6.7540 -1.0155 35 1 1.6459 -7.0722 -2.0606 36 1 1.4825 -9.4622 -1.6802 37 1 -0.1553 -8.8876 -2.0883 38 1 -0.8633 -11.1178 -1.7829 39 1 -3.0205 -11.1396 0.3253 40 1 -3.1558 -10.8478 -1.4371 41 1 -3.0238 -13.2009 -1.9477 42 1 -3.9911 -13.2104 -0.4381 43 1 -1.7381 -14.6850 -0.5480 44 1 -2.0672 -13.7181 0.9226 45 1 -0.0900 -13.2130 -1.2977 46 1 0.0130 -12.7743 0.4311 47 1 0.6057 -6.6179 1.4256 48 1 1.9489 -7.5876 2.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319867240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:55 Heat of formation + Delta-G solvation = 16.750587 kcal Electronic energy + Delta-G solvation = -28724.143174 eV Core-core repulsion = 24813.853124 eV Total energy + Delta-G solvation = -3910.290050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.39637 -41.17630 -39.04052 -38.47233 -36.20532 -35.54722 -34.39906 -32.89329 -31.36550 -30.40297 -29.63901 -29.17367 -28.00615 -25.96012 -24.85509 -23.81196 -23.43256 -21.57025 -21.46807 -20.87036 -20.55333 -18.99134 -18.29035 -17.86056 -17.46642 -17.20611 -17.04482 -16.46888 -16.32392 -16.22888 -16.14655 -15.63146 -15.20385 -15.00402 -14.60597 -14.32074 -14.20990 -14.11379 -13.94323 -13.71690 -13.02260 -12.95334 -12.81352 -12.78469 -12.56133 -12.50443 -12.44384 -12.33725 -12.23247 -12.01683 -11.94356 -11.82558 -11.48273 -11.46757 -11.42269 -11.31112 -11.07655 -10.83514 -10.13375 -9.82390 -9.41415 -8.31715 -6.48191 0.77500 1.42051 1.42705 1.46118 1.56097 1.68648 1.73529 2.29978 2.43618 2.58307 3.03703 3.08256 3.28506 3.42408 3.61312 3.67516 3.85743 3.91720 4.04297 4.14650 4.18025 4.29918 4.43613 4.44758 4.47111 4.52651 4.55560 4.57084 4.58714 4.65378 4.80613 4.86693 4.92217 4.97109 5.06585 5.07594 5.09559 5.21811 5.24711 5.25586 5.36776 5.46273 5.50266 5.53278 5.56782 5.68011 5.83442 5.91795 6.64303 6.86910 7.21845 7.46980 7.65589 8.80202 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.002098 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.011449 B =13344.257719 C =13603.388802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.703 5.703 11 C 0.462 3.538 12 O -0.598 6.598 13 C 0.047 3.953 14 N -0.502 5.502 15 C 0.018 3.982 16 C 0.109 3.891 17 N -0.465 5.465 18 C 0.179 3.821 19 N -0.334 5.334 20 N -0.336 5.336 21 C 0.194 3.806 22 C -0.004 4.004 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.107 4.107 27 C 0.132 3.868 28 H 0.268 0.732 29 H -0.013 1.013 30 H -0.018 1.018 31 H 0.411 0.589 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.050 0.950 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -24.690 -8.242 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.353 5.353 11 C 0.248 3.752 12 O -0.481 6.481 13 C -0.084 4.084 14 N -0.224 5.224 15 C -0.110 4.110 16 C -0.012 4.012 17 N -0.155 5.155 18 C -0.091 4.091 19 N -0.173 5.173 20 N -0.176 5.176 21 C -0.075 4.075 22 C -0.024 4.024 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.146 4.146 27 C 0.002 3.998 28 H 0.076 0.924 29 H 0.005 0.995 30 H 0.000 1.000 31 H 0.247 0.753 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.320 -25.544 -6.936 26.819 hybrid contribution -0.145 2.580 -0.532 2.639 sum 4.176 -22.964 -7.468 24.506 Atomic orbital electron populations 1.70143 1.08312 1.28440 1.50220 1.26073 0.95741 1.03999 0.93990 0.85134 0.79263 0.77438 0.77539 1.17356 1.20548 1.20800 1.21683 0.94416 0.90601 1.52445 0.89566 1.18476 0.88724 0.84606 0.93787 1.46316 1.11276 1.05741 1.71926 1.22825 0.90665 0.85874 0.75792 1.90615 1.19600 1.84977 1.52860 1.22539 0.94648 0.82207 1.08971 1.62676 1.27185 1.31117 1.01440 1.22802 0.98078 0.94877 0.95289 1.22487 1.01809 0.95568 0.81353 1.46180 1.38379 1.20879 1.10069 1.24743 1.02267 0.99410 0.82654 1.73858 1.12322 1.03890 1.27251 1.74359 1.21368 1.16253 1.05608 1.25162 0.95902 0.91383 0.95019 1.20539 0.96118 0.91177 0.94605 1.22441 0.92405 0.98941 1.01726 1.22468 0.98485 0.92582 1.01665 1.22345 0.94111 0.99254 1.00214 1.22152 0.98461 0.92015 1.01953 1.20777 0.94914 0.89412 0.94686 0.92362 0.99540 0.99997 0.75310 0.84457 0.83218 0.93176 0.85646 0.85875 0.86226 0.86597 0.93333 0.90258 0.89157 0.91009 0.89522 0.92989 0.88591 0.93529 0.91935 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.98 41.34 29.54 68.60 2.03 43.37 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -28.90 9.28 25.60 0.24 -28.66 16 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.27 13.92 5.43 85.63 0.46 14.39 16 10 N -0.70 -26.18 5.55 -466.78 -2.59 -28.77 16 11 C 0.46 15.44 7.17 87.66 0.63 16.06 16 12 O -0.60 -25.75 11.77 -3.00 -0.04 -25.78 16 13 C 0.05 0.93 5.80 85.56 0.50 1.43 16 14 N -0.50 -11.13 4.86 -902.75 -4.38 -15.51 16 15 C 0.02 0.38 4.84 86.45 0.42 0.80 16 16 C 0.11 1.84 6.82 86.57 0.59 2.43 16 17 N -0.46 -11.97 3.12 -504.45 -1.57 -13.54 16 18 C 0.18 5.72 7.86 138.11 1.09 6.81 16 19 N -0.33 -12.48 12.20 -50.26 -0.61 -13.09 16 20 N -0.34 -11.62 12.02 -50.59 -0.61 -12.23 16 21 C 0.19 5.12 6.30 138.20 0.87 5.99 16 22 C 0.00 -0.06 3.36 -10.81 -0.04 -0.10 16 23 C -0.12 -1.98 6.35 31.67 0.20 -1.78 16 24 C -0.11 -1.37 6.91 31.89 0.22 -1.15 16 25 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 26 C -0.11 -1.59 6.45 31.32 0.20 -1.39 16 27 C 0.13 3.77 5.61 85.49 0.48 4.25 16 28 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 29 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 30 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 31 H 0.41 12.11 8.32 -92.71 -0.77 11.34 16 32 H 0.14 2.06 8.12 -2.39 -0.02 2.04 16 33 H 0.15 1.90 8.12 -2.39 -0.02 1.89 16 34 H 0.05 1.56 5.68 -2.38 -0.01 1.55 16 35 H 0.13 1.97 7.99 -2.39 -0.02 1.95 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 1.46 8.03 -2.39 -0.02 1.44 16 38 H 0.12 1.26 7.62 -2.38 -0.02 1.25 16 39 H 0.05 1.14 7.67 -2.39 -0.02 1.12 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 0.94 7.66 -2.39 -0.02 0.92 16 47 H 0.06 2.26 5.85 -2.38 -0.01 2.24 16 48 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -81.17 380.51 -0.75 -81.92 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.20 Total: 20.64 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.54 Total: 18.21 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -9.48 Total: -138.36 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.04 Total: -25.78 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -81.17 -0.75 -81.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319867240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.669 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds