Wall clock time and date at job start Tue Mar 31 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.01565 * 305.06387 * 11 10 9 13 13 C 1.54270 * 110.03278 * 66.45233 * 11 10 9 14 14 C 1.54888 * 104.19515 * 142.89766 * 13 11 10 15 15 C 1.54884 * 102.74825 * 322.05473 * 14 13 11 16 16 C 1.53875 * 110.03603 * 183.61804 * 11 10 9 17 17 H 1.09000 * 110.03278 * 121.42979 * 16 11 10 18 18 N 1.46497 * 110.02987 * 0.02562 * 16 11 10 19 19 C 1.34779 * 120.00198 * 154.99722 * 18 16 11 20 20 O 1.21591 * 119.99750 * 359.97438 * 19 18 16 21 21 C 1.47518 * 120.00058 * 179.97438 * 19 18 16 22 22 C 1.36596 * 125.77155 * 180.02562 * 21 19 18 23 23 N 1.34818 * 106.84034 * 179.97438 * 22 21 19 24 24 C 1.46497 * 126.59208 * 180.02562 * 23 22 21 25 25 C 1.53787 * 113.61869 * 14.13462 * 24 23 22 26 26 C 1.53956 * 87.01889 * 220.04973 * 25 24 23 27 27 C 1.53773 * 87.11363 * 25.36023 * 26 25 24 28 28 N 1.40210 * 106.81052 * 359.97438 * 23 22 21 29 29 N 1.28764 * 108.36700 * 359.75155 * 28 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 1.08999 * 110.48587 * 261.57474 * 13 11 10 35 35 H 1.08992 * 110.48555 * 24.08426 * 13 11 10 36 36 H 1.09000 * 110.75996 * 80.37311 * 14 13 11 37 37 H 1.09007 * 110.75236 * 203.55776 * 14 13 11 38 38 H 1.09006 * 110.48553 * 156.62419 * 15 14 13 39 39 H 1.09002 * 110.49254 * 279.13355 * 15 14 13 40 40 H 0.97002 * 120.00132 * 334.99582 * 18 16 11 41 41 H 1.08000 * 126.57891 * 359.97438 * 22 21 19 42 42 H 1.09004 * 112.85154 * 145.32960 * 24 23 22 43 43 H 1.09000 * 113.61001 * 334.57166 * 25 24 23 44 44 H 1.08993 * 113.61311 * 105.46617 * 25 24 23 45 45 H 1.09001 * 113.53134 * 270.80983 * 26 25 24 46 46 H 1.08998 * 113.74076 * 139.94612 * 26 25 24 47 47 H 1.08996 * 113.61519 * 220.08670 * 27 26 25 48 48 H 1.09006 * 113.69085 * 89.19540 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3741 -4.7211 0.8358 13 6 0.2810 -4.8448 -1.3312 14 6 0.1129 -6.3523 -1.6446 15 6 1.4670 -6.9494 -1.1877 16 6 1.8181 -6.1579 0.0890 17 1 1.4941 -6.7097 0.9714 18 7 3.2619 -5.9171 0.1497 19 6 4.0737 -6.8290 0.7207 20 8 3.6077 -7.8511 1.1859 21 6 5.5276 -6.5868 0.7814 22 6 6.4548 -7.4267 1.3297 23 7 7.6564 -6.8344 1.1781 24 6 8.9517 -7.3631 1.6128 25 6 8.9151 -8.8551 1.9836 26 6 9.8481 -8.5039 3.1568 27 6 9.2672 -7.0816 3.0914 28 7 7.4281 -5.6157 0.5235 29 7 6.1647 -5.5054 0.3005 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 -0.6923 -4.3696 -1.2095 35 1 0.8500 -4.3506 -2.1186 36 1 -0.7101 -6.7770 -1.0698 37 1 -0.0416 -6.5101 -2.7120 38 1 1.3592 -8.0103 -0.9613 39 1 2.2281 -6.7992 -1.9535 40 1 3.6336 -5.1015 -0.2211 41 1 6.2623 -8.3820 1.7952 42 1 9.7646 -7.1013 0.9354 43 1 7.9309 -9.2030 2.2974 44 1 9.3755 -9.5019 1.2369 45 1 10.9065 -8.5554 2.9016 46 1 9.6092 -9.0311 4.0804 47 1 10.0114 -6.2988 3.2377 48 1 8.3794 -6.9423 3.7083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320132962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:13 Heat of formation + Delta-G solvation = 91.129463 kcal Electronic energy + Delta-G solvation = -28512.093015 eV Core-core repulsion = 24605.028276 eV Total energy + Delta-G solvation = -3907.064740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43336 -39.91025 -39.25627 -37.80563 -34.29269 -33.75628 -33.09501 -31.33281 -31.07290 -28.50485 -27.66547 -26.49083 -26.31253 -24.52345 -23.56289 -22.60801 -22.39055 -20.78417 -20.36043 -20.09281 -18.90778 -18.57164 -17.15598 -16.63052 -16.45595 -15.92853 -15.85330 -15.17571 -14.89352 -14.70592 -14.48954 -14.36423 -13.73650 -13.62760 -13.48126 -13.23794 -13.10372 -12.93556 -12.81503 -12.48815 -12.20375 -12.10813 -11.58910 -11.47789 -11.37095 -11.25034 -11.07083 -10.80384 -10.76666 -10.74255 -10.44860 -10.42630 -10.32091 -10.22614 -10.03341 -9.86878 -9.61501 -9.42565 -8.88351 -8.75544 -6.86214 -5.70668 -2.98896 0.97138 1.67739 1.79221 3.23976 3.34234 3.48730 3.53783 3.54500 3.55938 3.73704 4.03364 4.06800 4.09202 4.50195 4.63068 4.64858 4.78161 4.86858 4.89820 4.91920 4.96852 5.09238 5.17734 5.18598 5.25561 5.31807 5.52651 5.55275 5.61237 5.65435 5.73814 5.76268 5.83751 5.92325 6.00984 6.11556 6.18265 6.25357 6.30059 6.37060 6.54534 6.67081 6.69695 6.81697 6.90869 7.59132 7.77534 7.90343 8.28861 8.48322 9.59807 10.17158 10.52359 11.52244 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.002945 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.714599 B = 9504.159972 C =11783.541549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.157 3.843 11 C -0.108 4.108 12 H 0.083 0.917 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.091 0.909 18 N -0.703 5.703 19 C 0.603 3.397 20 O -0.548 6.548 21 C -0.099 4.099 22 C 0.089 3.911 23 N -0.353 5.353 24 C 0.122 3.878 25 C -0.147 4.147 26 C -0.135 4.135 27 C -0.146 4.146 28 N -0.063 5.063 29 N -0.199 5.199 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.416 0.584 41 H 0.201 0.799 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.439 -22.551 3.317 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.029 3.971 11 C -0.127 4.127 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.109 0.891 18 N -0.356 5.356 19 C 0.387 3.613 20 O -0.426 6.426 21 C -0.238 4.238 22 C -0.067 4.067 23 N -0.137 5.137 24 C 0.020 3.980 25 C -0.186 4.186 26 C -0.173 4.173 27 C -0.185 4.185 28 N -0.043 5.043 29 N -0.073 5.073 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.256 0.744 41 H 0.218 0.782 42 H 0.152 0.848 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.911 -21.854 3.077 27.804 hybrid contribution 0.086 0.518 0.266 0.588 sum 16.997 -21.336 3.343 27.483 Atomic orbital electron populations 1.69659 1.05074 1.25549 1.58037 1.24718 0.95508 0.97628 1.03164 0.86200 0.78698 0.83896 0.77507 1.21749 1.21861 1.20742 1.19251 0.91094 0.84146 1.42292 0.91138 1.42313 1.05833 0.99742 1.89329 1.20690 0.93277 0.85561 0.97609 1.22228 0.97866 0.93467 0.99174 0.89902 1.22359 1.00647 0.95123 0.96818 1.22482 0.96651 0.96350 1.00709 1.22764 0.97791 0.99362 0.97117 1.21709 0.78654 0.96333 0.98914 0.89079 1.46234 1.07557 1.22997 1.58773 1.16776 0.83218 0.83387 0.77889 1.90768 1.75821 1.27195 1.48810 1.21529 0.96342 0.94863 1.11089 1.23184 0.84251 1.00187 0.99115 1.50592 1.07213 1.15628 1.40275 1.23429 0.82131 0.95265 0.97172 1.23508 1.02069 0.93640 0.99341 1.22740 0.99601 0.95986 0.99000 1.23452 1.02517 0.98655 0.93827 1.82040 1.09413 0.98701 1.14133 1.74723 0.99821 1.19428 1.13294 0.93601 0.78192 0.96286 0.96011 0.91179 0.90915 0.91569 0.91647 0.91447 0.91260 0.74445 0.78229 0.84828 0.88537 0.89321 0.89016 0.89731 0.89547 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -18.64 5.43 -59.91 -0.33 -18.97 16 10 C 0.16 3.20 4.18 -4.04 -0.02 3.18 16 11 C -0.11 -1.80 2.98 -89.50 -0.27 -2.06 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.74 6.02 -25.07 -0.15 -1.89 16 14 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 15 C -0.13 -1.73 6.53 -25.08 -0.16 -1.89 16 16 C 0.15 2.21 3.22 -66.81 -0.22 1.99 16 17 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 18 N -0.70 -10.82 4.41 -53.77 -0.24 -11.05 16 19 C 0.60 9.27 7.81 -12.48 -0.10 9.17 16 20 O -0.55 -9.15 16.52 5.29 0.09 -9.06 16 21 C -0.10 -1.39 6.99 -83.55 -0.58 -1.97 16 22 C 0.09 0.94 10.49 -16.83 -0.18 0.76 16 23 N -0.35 -3.53 3.83 -53.77 -0.21 -3.74 16 24 C 0.12 0.71 5.05 -67.12 -0.34 0.37 16 25 C -0.15 -0.51 7.47 -25.82 -0.19 -0.71 16 26 C -0.14 -0.38 8.09 -25.83 -0.21 -0.58 16 27 C -0.15 -0.71 7.88 -25.92 -0.20 -0.91 16 28 N -0.06 -0.89 13.78 60.35 0.83 -0.05 16 29 N -0.20 -3.09 12.04 32.85 0.40 -2.69 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.28 7.51 -40.82 -0.31 9.97 16 32 H 0.02 0.40 7.06 -51.93 -0.37 0.03 16 33 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.23 7.78 -51.93 -0.40 0.83 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 40 H 0.42 6.70 5.56 -40.82 -0.23 6.47 16 41 H 0.20 1.46 6.78 -52.49 -0.36 1.10 16 42 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.33 6.39 -51.93 -0.33 0.00 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -34.42 388.95 -8.31 -42.73 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.39 Total: 10.64 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.03 Total: -3.70 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 1.18 Total: -64.42 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.42 -8.31 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320132962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.861 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds