Wall clock time and date at job start Tue Mar 31 2020 18:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.01565 * 305.06387 * 11 10 9 13 13 C 1.54270 * 110.03278 * 66.45233 * 11 10 9 14 14 C 1.54888 * 104.19515 * 142.89766 * 13 11 10 15 15 C 1.54884 * 102.74825 * 322.05473 * 14 13 11 16 16 C 1.53875 * 110.03603 * 183.61804 * 11 10 9 17 17 H 1.09000 * 110.03278 * 121.42979 * 16 11 10 18 18 N 1.46497 * 110.02987 * 0.02562 * 16 11 10 19 19 C 1.34779 * 120.00198 * 154.99722 * 18 16 11 20 20 O 1.21591 * 119.99750 * 359.97438 * 19 18 16 21 21 C 1.47518 * 120.00058 * 179.97438 * 19 18 16 22 22 C 1.36596 * 125.77155 * 180.02562 * 21 19 18 23 23 N 1.34818 * 106.84034 * 179.97438 * 22 21 19 24 24 C 1.46497 * 126.59208 * 180.02562 * 23 22 21 25 25 C 1.53787 * 113.61869 * 14.13462 * 24 23 22 26 26 C 1.53956 * 87.01889 * 220.04973 * 25 24 23 27 27 C 1.53773 * 87.11363 * 25.36023 * 26 25 24 28 28 N 1.40210 * 106.81052 * 359.97438 * 23 22 21 29 29 N 1.28764 * 108.36700 * 359.75155 * 28 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 1.08999 * 110.48587 * 261.57474 * 13 11 10 35 35 H 1.08992 * 110.48555 * 24.08426 * 13 11 10 36 36 H 1.09000 * 110.75996 * 80.37311 * 14 13 11 37 37 H 1.09007 * 110.75236 * 203.55776 * 14 13 11 38 38 H 1.09006 * 110.48553 * 156.62419 * 15 14 13 39 39 H 1.09002 * 110.49254 * 279.13355 * 15 14 13 40 40 H 0.97002 * 120.00132 * 334.99582 * 18 16 11 41 41 H 1.08000 * 126.57891 * 359.97438 * 22 21 19 42 42 H 1.09004 * 112.85154 * 145.32960 * 24 23 22 43 43 H 1.09000 * 113.61001 * 334.57166 * 25 24 23 44 44 H 1.08993 * 113.61311 * 105.46617 * 25 24 23 45 45 H 1.09001 * 113.53134 * 270.80983 * 26 25 24 46 46 H 1.08998 * 113.74076 * 139.94612 * 26 25 24 47 47 H 1.08996 * 113.61519 * 220.08670 * 27 26 25 48 48 H 1.09006 * 113.69085 * 89.19540 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3741 -4.7211 0.8358 13 6 0.2810 -4.8448 -1.3312 14 6 0.1129 -6.3523 -1.6446 15 6 1.4670 -6.9494 -1.1877 16 6 1.8181 -6.1579 0.0890 17 1 1.4941 -6.7097 0.9714 18 7 3.2619 -5.9171 0.1497 19 6 4.0737 -6.8290 0.7207 20 8 3.6077 -7.8511 1.1859 21 6 5.5276 -6.5868 0.7814 22 6 6.4548 -7.4267 1.3297 23 7 7.6564 -6.8344 1.1781 24 6 8.9517 -7.3631 1.6128 25 6 8.9151 -8.8551 1.9836 26 6 9.8481 -8.5039 3.1568 27 6 9.2672 -7.0816 3.0914 28 7 7.4281 -5.6157 0.5235 29 7 6.1647 -5.5054 0.3005 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 -0.6923 -4.3696 -1.2095 35 1 0.8500 -4.3506 -2.1186 36 1 -0.7101 -6.7770 -1.0698 37 1 -0.0416 -6.5101 -2.7120 38 1 1.3592 -8.0103 -0.9613 39 1 2.2281 -6.7992 -1.9535 40 1 3.6336 -5.1015 -0.2211 41 1 6.2623 -8.3820 1.7952 42 1 9.7646 -7.1013 0.9354 43 1 7.9309 -9.2030 2.2974 44 1 9.3755 -9.5019 1.2369 45 1 10.9065 -8.5554 2.9016 46 1 9.6092 -9.0311 4.0804 47 1 10.0114 -6.2988 3.2377 48 1 8.3794 -6.9423 3.7083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320132962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:12 Heat of formation + Delta-G solvation = 67.914210 kcal Electronic energy + Delta-G solvation = -28513.099704 eV Core-core repulsion = 24605.028276 eV Total energy + Delta-G solvation = -3908.071429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.34968 -41.09005 -39.77336 -39.06830 -36.22914 -34.85540 -34.01878 -33.30410 -32.05890 -30.17443 -28.77100 -26.97712 -26.82609 -26.34577 -24.62682 -24.22465 -23.34330 -21.85860 -21.50330 -20.58464 -20.30559 -19.58620 -19.00289 -17.66948 -17.19036 -17.17568 -16.60551 -16.43019 -16.32956 -15.82579 -15.72687 -15.56384 -15.24684 -15.03398 -14.75921 -14.39387 -14.19330 -13.76246 -13.51686 -13.46894 -13.26225 -13.12711 -12.91914 -12.86554 -12.75725 -12.35342 -12.18562 -12.04862 -11.91085 -11.85074 -11.78167 -11.70793 -11.52224 -11.51155 -11.43983 -11.22604 -11.14548 -10.93853 -10.42699 -10.00964 -9.00038 -7.95219 -5.23716 0.10316 0.57840 1.06073 1.46216 1.47847 1.56511 2.11555 2.20848 2.55484 3.05802 3.16699 3.37349 3.37545 3.46422 3.64183 3.69937 3.74696 3.74995 3.85818 3.89648 4.14807 4.18942 4.40460 4.42087 4.50034 4.51874 4.55460 4.60208 4.66464 4.68251 4.76088 4.78475 4.90141 4.92856 4.93880 5.00640 5.05775 5.10515 5.24716 5.27489 5.28058 5.36930 5.48552 5.51107 5.51666 5.54074 6.26924 6.38903 6.86570 7.09558 7.33987 8.08415 8.33613 9.28122 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.002945 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.714599 B = 9504.159972 C =11783.541549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.101 4.101 12 H 0.077 0.923 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.091 0.909 18 N -0.707 5.707 19 C 0.605 3.395 20 O -0.563 6.563 21 C -0.126 4.126 22 C 0.110 3.890 23 N -0.336 5.336 24 C 0.102 3.898 25 C -0.139 4.139 26 C -0.122 4.122 27 C -0.149 4.149 28 N -0.093 5.093 29 N -0.232 5.232 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.021 0.979 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.411 0.589 41 H 0.235 0.765 42 H 0.144 0.856 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.997 -24.717 3.623 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.120 4.120 12 H 0.096 0.904 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.048 3.952 17 H 0.109 0.891 18 N -0.359 5.359 19 C 0.390 3.610 20 O -0.442 6.442 21 C -0.267 4.267 22 C -0.049 4.049 23 N -0.120 5.120 24 C 0.002 3.998 25 C -0.178 4.178 26 C -0.159 4.159 27 C -0.188 4.188 28 N -0.073 5.073 29 N -0.105 5.105 30 H 0.061 0.939 31 H 0.209 0.791 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.251 0.749 42 H 0.162 0.838 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.525 -24.042 3.379 30.538 hybrid contribution -0.283 1.119 0.234 1.178 sum 18.242 -22.923 3.613 29.517 Atomic orbital electron populations 1.69805 1.06437 1.26062 1.59444 1.25515 0.96413 1.00901 1.03659 0.85177 0.77644 0.79663 0.77513 1.21247 1.21938 1.19837 1.19593 0.91357 0.85467 1.41276 0.91126 1.42473 1.05622 1.00784 1.89219 1.20749 0.93775 0.85060 0.96937 1.22136 0.97160 0.92931 0.99778 0.90415 1.22297 0.99564 0.97490 0.95488 1.22436 0.96851 0.93486 1.02077 1.22715 0.97917 0.99746 0.95888 1.21698 0.78274 0.95170 1.00049 0.89051 1.46268 1.07800 1.22921 1.58905 1.16916 0.83792 0.82987 0.77275 1.90744 1.76292 1.27645 1.49547 1.21563 0.96155 0.95853 1.13083 1.23640 0.83524 1.00423 0.97267 1.50927 1.08507 1.14206 1.38366 1.24080 0.80611 0.97212 0.97878 1.23559 1.02667 0.91707 0.99822 1.22730 1.00207 0.93923 0.99082 1.23481 1.02249 1.00405 0.92654 1.81934 1.08895 1.00802 1.15627 1.74685 1.00611 1.20645 1.14525 0.93948 0.79149 0.96162 0.96887 0.92026 0.92655 0.89972 0.89965 0.90106 0.91481 0.75070 0.74875 0.83796 0.88134 0.87831 0.87535 0.88874 0.89508 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 47.73 29.55 68.60 2.03 49.75 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.41 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -38.78 5.43 -343.45 -1.87 -40.65 16 10 C 0.16 6.78 4.18 86.38 0.36 7.15 16 11 C -0.10 -3.38 2.98 -10.07 -0.03 -3.41 16 12 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 13 C -0.11 -3.43 6.02 31.67 0.19 -3.24 16 14 C -0.11 -2.57 6.91 31.88 0.22 -2.35 16 15 C -0.12 -3.05 6.53 31.67 0.21 -2.85 16 16 C 0.15 4.46 3.22 45.72 0.15 4.61 16 17 H 0.09 2.69 7.56 -2.39 -0.02 2.67 16 18 N -0.71 -21.92 4.41 -442.28 -1.95 -23.87 16 19 C 0.61 18.47 7.81 86.69 0.68 19.15 16 20 O -0.56 -18.25 16.52 -4.00 -0.07 -18.31 16 21 C -0.13 -3.53 6.99 40.81 0.29 -3.24 16 22 C 0.11 2.16 10.49 83.85 0.88 3.03 16 23 N -0.34 -6.38 3.83 -324.03 -1.24 -7.62 16 24 C 0.10 1.00 5.05 45.52 0.23 1.23 16 25 C -0.14 -0.55 7.47 31.18 0.23 -0.31 16 26 C -0.12 -0.31 8.09 31.18 0.25 -0.06 16 27 C -0.15 -1.19 7.88 31.12 0.25 -0.95 16 28 N -0.09 -2.63 13.78 37.02 0.51 -2.12 16 29 N -0.23 -7.36 12.04 -50.00 -0.60 -7.96 16 30 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.38 20.74 7.51 -92.71 -0.70 20.04 16 32 H 0.02 0.87 7.06 -2.39 -0.02 0.85 16 33 H 0.01 0.58 7.51 -2.39 -0.02 0.56 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.90 7.78 -2.39 -0.02 1.88 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 1.70 8.06 -2.39 -0.02 1.68 16 40 H 0.41 13.63 5.56 -92.71 -0.52 13.12 16 41 H 0.24 2.76 6.78 -2.91 -0.02 2.75 16 42 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.10 0.34 6.39 -2.39 -0.02 0.33 16 44 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -75.26 388.95 2.08 -73.18 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.22 Total: 36.05 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.20 Total: 1.52 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -4.86 Total: -142.20 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -75.26 2.08 -73.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320132962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.093 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds