Wall clock time and date at job start Tue Mar 31 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53000 * 109.47135 * 46.18010 * 6 5 4 8 8 C 1.52997 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47021 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46843 * 179.97438 * 9 8 7 11 11 S 1.65604 * 119.99749 * 165.00000 * 10 9 8 12 12 O 1.42094 * 104.27718 * 181.06657 * 11 10 9 13 13 O 1.42096 * 104.27847 * 308.92466 * 11 10 9 14 14 C 1.81405 * 104.45069 * 64.99788 * 11 10 9 15 15 C 1.52998 * 109.47137 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47211 * 179.97438 * 15 14 11 17 17 H 1.08008 * 119.99951 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00505 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99421 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00583 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47048 * 59.99654 * 20 18 16 22 22 H 1.48502 * 109.47354 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47072 * 300.00057 * 20 18 16 24 24 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 25 25 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 26 26 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 27 27 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 29 29 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 30 30 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 31 31 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 32 32 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 33 33 H 1.08994 * 109.47069 * 166.17990 * 6 5 4 34 34 H 1.09001 * 109.47054 * 286.17919 * 6 5 4 35 35 H 1.09005 * 109.46953 * 299.99531 * 7 6 5 36 36 H 1.08991 * 109.47188 * 60.00097 * 7 6 5 37 37 H 1.09004 * 109.46942 * 299.99929 * 8 7 6 38 38 H 1.09001 * 109.47310 * 59.99823 * 8 7 6 39 39 H 1.09004 * 109.47205 * 299.99768 * 9 8 7 40 40 H 1.09001 * 109.47223 * 59.99770 * 9 8 7 41 41 H 0.97000 * 120.00341 * 344.99510 * 10 9 8 42 42 H 1.09008 * 109.46934 * 299.99837 * 14 11 10 43 43 H 1.08996 * 109.47132 * 59.99873 * 14 11 10 44 44 H 1.09001 * 109.46598 * 299.99762 * 15 14 11 45 45 H 1.08996 * 109.47353 * 59.99837 * 15 14 11 46 46 H 0.97001 * 119.99790 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.48806 * 180.71933 * 24 5 4 48 48 H 1.09003 * 109.49203 * 60.65575 * 24 5 4 49 49 H 1.09001 * 109.48625 * 296.77747 * 25 2 1 50 50 H 1.09003 * 109.48941 * 56.82355 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0292 1.9863 0.8095 8 6 7.5591 1.9861 0.8090 9 6 8.0692 3.4068 0.5591 10 7 9.5342 3.4067 0.5592 11 16 10.3623 4.7067 -0.0463 12 8 11.7299 4.3469 0.0931 13 8 9.7883 4.9216 -1.3283 14 6 9.9457 6.0708 1.0746 15 6 10.6583 7.3443 0.6150 16 6 10.3117 8.4777 1.5458 17 1 9.6497 8.3067 2.3818 18 6 10.8405 9.7327 1.3308 19 7 11.6478 9.9406 0.3136 20 14 10.4103 11.1377 2.4841 21 1 10.8442 10.7970 3.8628 22 1 11.1031 12.3735 2.0388 23 1 8.9421 11.3596 2.4679 24 6 3.5234 -0.8061 1.0599 25 6 1.9956 -0.7632 1.1402 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6014 1.9128 -0.8603 30 1 1.6935 1.8775 0.9171 31 1 3.8258 0.8485 -1.0102 32 1 3.9176 2.3453 -0.0506 33 1 5.8823 0.2143 2.0257 34 1 5.8824 -0.0949 0.2728 35 1 5.6659 2.3377 -0.1563 36 1 5.6659 2.6469 1.5967 37 1 7.9227 1.6345 1.7746 38 1 7.9221 1.3256 0.0216 39 1 7.7056 3.7589 -0.4063 40 1 7.7062 4.0670 1.3469 41 1 10.0192 2.6452 0.9140 42 1 8.8679 6.2339 1.0636 43 1 10.2650 5.8203 2.0862 44 1 11.7360 7.1815 0.6257 45 1 10.3387 7.5947 -0.3965 46 1 12.0202 10.8234 0.1625 47 1 3.9176 -1.3470 1.9202 48 1 3.8253 -1.3116 0.1426 49 1 1.6936 -0.2820 2.0704 50 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321719337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:55 Heat of formation + Delta-G solvation = -78.799665 kcal Electronic energy + Delta-G solvation = -26332.236016 eV Core-core repulsion = 22520.953796 eV Total energy + Delta-G solvation = -3811.282220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79055 -37.13970 -36.53766 -35.68332 -35.38018 -33.88135 -32.75611 -31.32245 -31.14977 -29.25384 -26.67254 -25.58947 -24.52806 -23.88268 -22.45982 -21.70245 -21.15367 -20.10163 -18.84751 -17.41421 -16.78155 -16.40425 -16.17195 -16.01617 -15.54832 -15.39556 -15.32072 -15.15612 -14.81977 -14.59643 -14.54631 -14.46091 -13.60450 -13.35490 -12.99327 -12.81308 -12.65390 -12.52615 -12.40580 -12.00799 -11.89613 -11.74052 -11.68507 -11.65485 -11.56766 -11.46402 -11.31275 -11.14392 -11.06306 -10.95751 -10.92556 -10.70464 -10.42805 -10.36525 -9.77768 -9.47733 -9.00831 -8.85939 -8.65063 -8.49451 -6.11744 -4.17364 0.82137 3.15797 3.27452 3.32302 3.34086 3.46174 3.51855 4.25642 4.37407 4.40734 4.47798 4.59342 4.65824 4.72894 4.76775 4.85622 4.92483 4.98135 5.03418 5.09669 5.10666 5.12635 5.19396 5.23267 5.32616 5.37956 5.42691 5.45772 5.47902 5.53709 5.55055 5.64403 5.68718 5.69234 5.73112 5.91446 5.99518 6.12311 6.49127 6.50200 6.52357 6.71602 6.73290 7.11484 7.31076 7.37543 7.80946 8.18317 8.85757 9.47235 10.99193 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.001931 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.707138 B =14496.348334 C =15767.621641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.055 3.945 4 C 0.049 3.951 5 N -0.541 5.541 6 C 0.057 3.943 7 C -0.124 4.124 8 C -0.123 4.123 9 C 0.115 3.885 10 N -1.129 6.129 11 S 2.595 3.405 12 O -0.969 6.969 13 O -0.968 6.968 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.057 3.943 25 C 0.057 3.943 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.411 0.589 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.042 0.958 49 H 0.042 0.958 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.650 -22.768 2.337 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.073 4.073 4 C -0.079 4.079 5 N -0.266 5.266 6 C -0.071 4.071 7 C -0.163 4.163 8 C -0.162 4.162 9 C -0.012 4.012 10 N -0.886 5.886 11 S 2.692 3.308 12 O -0.959 6.959 13 O -0.958 6.958 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.072 4.072 25 C -0.072 4.072 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.244 0.756 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.098 -22.527 1.369 29.564 hybrid contribution -0.384 0.665 1.365 1.567 sum -19.481 -21.861 2.735 29.410 Atomic orbital electron populations 1.22346 0.87093 1.02062 1.00820 1.62167 1.07925 1.14258 1.42871 1.22205 0.94761 0.89107 1.01212 1.22308 0.94069 0.99433 0.92086 1.62226 1.07797 1.13661 1.42934 1.22130 0.86514 0.97114 1.01298 1.21714 0.94767 0.96776 1.03022 1.21712 0.95264 0.96520 1.02754 1.21272 0.79460 0.98083 1.02346 1.55789 1.14969 1.35849 1.82016 1.05469 0.73633 0.75421 0.76249 1.93549 1.33003 1.82000 1.87380 1.93535 1.78793 1.85593 1.37859 1.30438 1.10855 1.16094 1.14886 1.18960 0.95612 0.88538 0.98040 1.20968 1.29542 0.93414 1.12106 0.92117 1.25071 0.94906 0.98959 0.95581 1.69949 1.31201 1.23074 1.28598 0.86523 0.78623 0.81169 0.80903 1.20110 1.21092 1.20091 1.22148 0.94310 0.89583 1.01121 1.22166 0.94583 0.98403 0.92017 0.91257 0.91397 0.95528 0.90197 0.93869 0.93892 0.89205 0.90493 0.94634 0.91113 0.90482 0.91088 0.91190 0.90298 0.91693 0.75559 0.86369 0.86146 0.94831 0.94808 0.92490 0.90258 0.93950 0.93937 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.60 60.06 0.58 0.72 16 2 N -0.55 -4.14 4.97 -242.75 -1.21 -5.34 16 3 C 0.06 0.41 5.62 -3.76 -0.02 0.39 16 4 C 0.05 0.38 4.93 -3.76 -0.02 0.36 16 5 N -0.54 -4.28 4.86 -234.46 -1.14 -5.42 16 6 C 0.06 0.41 5.28 -3.82 -0.02 0.39 16 7 C -0.12 -0.91 4.48 -26.73 -0.12 -1.03 16 8 C -0.12 -0.97 5.36 -26.73 -0.14 -1.11 16 9 C 0.11 1.20 6.13 -4.04 -0.02 1.17 16 10 N -1.13 -13.93 5.89 -10.61 -0.06 -13.99 16 11 S 2.59 45.42 5.46 -107.50 -0.59 44.83 16 12 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 13 O -0.97 -19.87 17.50 -57.54 -1.01 -20.87 16 14 C -0.59 -11.08 6.01 37.16 0.22 -10.86 16 15 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.06 0.40 5.58 -3.77 -0.02 0.38 16 25 C 0.06 0.39 5.62 -3.76 -0.02 0.37 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.66 5.99 -51.93 -0.31 0.34 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.07 0.53 6.26 -51.93 -0.33 0.20 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.41 4.23 8.62 -34.47 -0.30 3.93 16 42 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 43 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 LS Contribution 406.41 15.07 6.12 6.12 Total: -1.00 -35.22 406.41 -12.67 -47.88 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -9.33 Total: -0.84 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.14 Total: -21.81 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -1.67 Total: -50.49 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.05 Total: -41.86 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -0.59 Total: 44.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.22 -12.67 -47.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321719337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.915 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds