Wall clock time and date at job start Tue Mar 31 2020 17:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53000 * 109.47135 * 46.18010 * 6 5 4 8 8 C 1.52997 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47021 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46843 * 179.97438 * 9 8 7 11 11 S 1.65604 * 119.99749 * 165.00000 * 10 9 8 12 12 O 1.42094 * 104.27718 * 181.06657 * 11 10 9 13 13 O 1.42096 * 104.27847 * 308.92466 * 11 10 9 14 14 C 1.81405 * 104.45069 * 64.99788 * 11 10 9 15 15 C 1.52998 * 109.47137 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47211 * 179.97438 * 15 14 11 17 17 H 1.08008 * 119.99951 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00505 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99421 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00583 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47048 * 59.99654 * 20 18 16 22 22 H 1.48502 * 109.47354 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47072 * 300.00057 * 20 18 16 24 24 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 25 25 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 26 26 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 27 27 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 29 29 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 30 30 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 31 31 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 32 32 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 33 33 H 1.08994 * 109.47069 * 166.17990 * 6 5 4 34 34 H 1.09001 * 109.47054 * 286.17919 * 6 5 4 35 35 H 1.09005 * 109.46953 * 299.99531 * 7 6 5 36 36 H 1.08991 * 109.47188 * 60.00097 * 7 6 5 37 37 H 1.09004 * 109.46942 * 299.99929 * 8 7 6 38 38 H 1.09001 * 109.47310 * 59.99823 * 8 7 6 39 39 H 1.09004 * 109.47205 * 299.99768 * 9 8 7 40 40 H 1.09001 * 109.47223 * 59.99770 * 9 8 7 41 41 H 0.97000 * 120.00341 * 344.99510 * 10 9 8 42 42 H 1.09008 * 109.46934 * 299.99837 * 14 11 10 43 43 H 1.08996 * 109.47132 * 59.99873 * 14 11 10 44 44 H 1.09001 * 109.46598 * 299.99762 * 15 14 11 45 45 H 1.08996 * 109.47353 * 59.99837 * 15 14 11 46 46 H 0.97001 * 119.99790 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.48806 * 180.71933 * 24 5 4 48 48 H 1.09003 * 109.49203 * 60.65575 * 24 5 4 49 49 H 1.09001 * 109.48625 * 296.77747 * 25 2 1 50 50 H 1.09003 * 109.48941 * 56.82355 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0292 1.9863 0.8095 8 6 7.5591 1.9861 0.8090 9 6 8.0692 3.4068 0.5591 10 7 9.5342 3.4067 0.5592 11 16 10.3623 4.7067 -0.0463 12 8 11.7299 4.3469 0.0931 13 8 9.7883 4.9216 -1.3283 14 6 9.9457 6.0708 1.0746 15 6 10.6583 7.3443 0.6150 16 6 10.3117 8.4777 1.5458 17 1 9.6497 8.3067 2.3818 18 6 10.8405 9.7327 1.3308 19 7 11.6478 9.9406 0.3136 20 14 10.4103 11.1377 2.4841 21 1 10.8442 10.7970 3.8628 22 1 11.1031 12.3735 2.0388 23 1 8.9421 11.3596 2.4679 24 6 3.5234 -0.8061 1.0599 25 6 1.9956 -0.7632 1.1402 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6014 1.9128 -0.8603 30 1 1.6935 1.8775 0.9171 31 1 3.8258 0.8485 -1.0102 32 1 3.9176 2.3453 -0.0506 33 1 5.8823 0.2143 2.0257 34 1 5.8824 -0.0949 0.2728 35 1 5.6659 2.3377 -0.1563 36 1 5.6659 2.6469 1.5967 37 1 7.9227 1.6345 1.7746 38 1 7.9221 1.3256 0.0216 39 1 7.7056 3.7589 -0.4063 40 1 7.7062 4.0670 1.3469 41 1 10.0192 2.6452 0.9140 42 1 8.8679 6.2339 1.0636 43 1 10.2650 5.8203 2.0862 44 1 11.7360 7.1815 0.6257 45 1 10.3387 7.5947 -0.3965 46 1 12.0202 10.8234 0.1625 47 1 3.9176 -1.3470 1.9202 48 1 3.8253 -1.3116 0.1426 49 1 1.6936 -0.2820 2.0704 50 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321719337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:54 Heat of formation + Delta-G solvation = -107.248790 kcal Electronic energy + Delta-G solvation = -26333.469662 eV Core-core repulsion = 22520.953796 eV Total energy + Delta-G solvation = -3812.515866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34864 -38.18411 -37.73182 -36.98069 -36.40420 -35.87282 -33.50012 -33.10032 -31.88964 -29.87527 -27.57088 -27.33596 -25.09649 -24.46692 -23.59440 -23.13596 -21.81953 -20.68434 -20.19873 -19.04394 -18.20612 -17.43802 -17.15651 -17.04310 -16.64496 -16.51428 -16.11979 -15.99308 -15.88585 -15.68566 -15.32761 -15.18502 -15.02051 -14.47463 -14.21407 -13.72593 -13.70578 -13.42746 -13.37306 -13.18307 -13.12058 -13.01699 -12.89239 -12.78369 -12.67542 -12.48915 -12.31803 -12.23568 -12.19498 -12.15139 -12.07472 -11.74123 -11.68543 -11.59043 -11.30746 -11.13456 -10.62634 -10.28676 -9.41668 -9.23270 -8.24663 -6.38617 -0.62866 1.41519 1.44932 1.53048 1.91175 2.39007 2.84906 2.90667 2.99429 3.08594 3.31966 3.79756 3.91051 3.98836 4.04850 4.10387 4.14840 4.16967 4.25332 4.32458 4.39523 4.45146 4.48542 4.54571 4.61834 4.65410 4.74610 4.76057 4.80831 4.83388 4.88301 4.91759 4.92137 5.00020 5.06859 5.08842 5.16482 5.29968 5.30893 5.37227 5.44622 5.69704 5.96790 5.97891 6.07800 6.15247 6.18669 6.20329 6.74997 7.31379 8.87231 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.001931 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.707138 B =14496.348334 C =15767.621641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.561 5.561 3 C 0.056 3.944 4 C 0.050 3.950 5 N -0.549 5.549 6 C 0.060 3.940 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.103 3.897 10 N -1.108 6.108 11 S 2.624 3.376 12 O -1.002 7.002 13 O -1.000 7.000 14 C -0.588 4.588 15 C 0.018 3.982 16 C -0.539 4.539 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.263 1.263 24 C 0.057 3.943 25 C 0.058 3.942 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.425 0.575 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.006 0.994 45 H 0.007 0.993 46 H 0.267 0.733 47 H 0.090 0.910 48 H 0.034 0.966 49 H 0.036 0.964 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.288 -23.671 4.183 32.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.072 4.072 4 C -0.078 4.078 5 N -0.274 5.274 6 C -0.068 4.068 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.023 4.023 10 N -0.871 5.871 11 S 2.720 3.280 12 O -0.992 6.992 13 O -0.990 6.990 14 C -0.720 4.720 15 C -0.021 4.021 16 C -0.578 4.578 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.071 4.071 25 C -0.070 4.070 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.261 0.739 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.740 -23.442 3.230 31.466 hybrid contribution 0.078 0.851 0.770 1.150 sum -20.661 -22.591 4.000 30.875 Atomic orbital electron populations 1.22377 0.86170 1.02713 1.00983 1.62201 1.08912 1.14220 1.43235 1.22190 0.94624 0.89285 1.01079 1.22292 0.94333 0.99493 0.91657 1.62264 1.08214 1.14104 1.42842 1.22115 0.86178 0.96902 1.01597 1.21649 0.94273 0.96918 1.02909 1.21652 0.95453 0.94702 1.03624 1.21590 0.77717 1.00309 1.02696 1.55261 1.15895 1.34315 1.81581 1.04312 0.72749 0.75545 0.75394 1.93498 1.35469 1.82574 1.87664 1.93494 1.79248 1.86383 1.39825 1.30330 1.11637 1.13712 1.16297 1.18831 0.94728 0.91688 0.96811 1.21502 1.29429 0.94232 1.12652 0.90570 1.26129 0.94716 1.02229 0.97286 1.70103 1.32675 1.23817 1.30750 0.85362 0.78869 0.77220 0.78778 1.18835 1.21086 1.18725 1.22181 0.94530 0.89228 1.01188 1.22185 0.94469 0.98894 0.91495 0.90883 0.90526 0.95552 0.89667 0.94564 0.94910 0.88909 0.89756 0.94868 0.91456 0.90371 0.89527 0.91164 0.91209 0.89885 0.73861 0.83960 0.83930 0.97580 0.97465 0.92456 0.89158 0.94744 0.94571 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 127.69 1.23 1.49 16 2 N -0.56 -7.91 4.97 -921.91 -4.58 -12.49 16 3 C 0.06 0.80 5.62 86.31 0.49 1.28 16 4 C 0.05 0.74 4.93 86.31 0.43 1.16 16 5 N -0.55 -7.93 4.86 -895.70 -4.35 -12.28 16 6 C 0.06 0.75 5.28 86.30 0.46 1.20 16 7 C -0.12 -1.49 4.48 30.59 0.14 -1.35 16 8 C -0.11 -1.50 5.36 30.59 0.16 -1.34 16 9 C 0.10 1.88 6.13 86.38 0.53 2.41 16 10 N -1.11 -25.03 5.89 -187.48 -1.10 -26.14 16 11 S 2.62 90.50 5.46 -56.49 -0.31 90.20 16 12 O -1.00 -41.24 18.08 -127.65 -2.31 -43.55 16 13 O -1.00 -41.18 17.50 -127.65 -2.23 -43.42 16 14 C -0.59 -21.53 6.01 71.98 0.43 -21.09 16 15 C 0.02 0.95 4.98 29.85 0.15 1.10 16 16 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 17 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 18 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 19 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 20 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 C 0.06 0.73 5.58 86.31 0.48 1.22 16 25 C 0.06 0.72 5.62 86.31 0.49 1.21 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.08 0.66 8.13 -2.39 -0.02 0.64 16 28 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 1.26 5.99 -2.39 -0.01 1.25 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.03 0.44 8.08 -2.39 -0.02 0.42 16 35 H 0.07 0.90 6.26 -2.38 -0.01 0.88 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.45 7.70 -2.39 -0.02 1.43 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.42 7.66 8.62 -96.74 -0.83 6.82 16 42 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 43 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.09 0.88 8.13 -2.39 -0.02 0.86 16 Total: -1.00 -76.63 406.41 -6.85 -83.48 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.06 Total: 17.65 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 5.67 Total: -42.03 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -9.75 Total: -107.49 kcal Atomic # 8 Polarization: -82.43 SS G_CDS: -4.54 Total: -86.97 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 90.50 SS G_CDS: -0.31 Total: 90.20 kcal Total: -76.63 -6.85 -83.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321719337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.772 kcal (2) G-P(sol) polarization free energy of solvation -76.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds