Wall clock time and date at job start Tue Mar 31 2020 17:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48502 * 109.47157 * 269.99755 * 3 2 1 5 5 H 1.48502 * 109.47363 * 30.00276 * 3 2 1 6 6 H 1.48506 * 109.47061 * 149.99888 * 3 2 1 7 7 C 1.37876 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99932 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99910 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46775 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46736 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47156 * 305.00088 * 11 10 9 13 13 N 1.46900 * 109.47013 * 65.00369 * 11 10 9 14 14 C 1.50698 * 109.47035 * 184.99789 * 11 10 9 15 15 O 1.21277 * 120.00307 * 260.00339 * 14 11 10 16 16 N 1.34783 * 119.99682 * 80.00243 * 14 11 10 17 17 C 1.46502 * 119.99705 * 179.97438 * 16 14 11 18 18 C 1.50699 * 109.46662 * 180.02562 * 17 16 14 19 19 N 1.30521 * 126.34827 * 84.72271 * 18 17 16 20 20 N 1.28597 * 109.67353 * 179.97438 * 19 18 17 21 21 C 1.30519 * 109.67205 * 359.97438 * 20 19 18 22 22 C 1.50703 * 126.34362 * 179.97438 * 21 20 19 23 23 C 1.52993 * 117.50131 * 351.40722 * 22 21 20 24 24 C 1.52994 * 60.00247 * 107.48639 * 23 22 21 25 25 N 1.35487 * 107.31058 * 0.22773 * 21 20 19 26 26 C 1.46499 * 126.98160 * 179.77483 * 25 21 20 27 27 C 1.52999 * 117.50104 * 311.72797 * 26 25 21 28 28 C 1.53004 * 117.49870 * 243.10294 * 26 25 21 29 29 H 0.97007 * 119.99922 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46885 * 59.99910 * 9 7 2 31 31 H 1.08995 * 109.46883 * 300.00075 * 9 7 2 32 32 H 1.09005 * 109.46889 * 60.00346 * 10 9 7 33 33 H 1.08997 * 109.47036 * 299.99649 * 10 9 7 34 34 H 1.00900 * 111.00394 * 59.99907 * 13 11 10 35 35 H 1.00896 * 111.00189 * 183.95372 * 13 11 10 36 36 H 0.97000 * 120.00173 * 359.97438 * 16 14 11 37 37 H 1.08995 * 109.47137 * 60.00494 * 17 16 14 38 38 H 1.08994 * 109.47155 * 299.99830 * 17 16 14 39 39 H 1.08998 * 115.56308 * 205.70737 * 22 21 20 40 40 H 1.09005 * 117.50046 * 214.97558 * 23 22 21 41 41 H 1.09004 * 117.49671 * 359.97438 * 23 22 21 42 42 H 1.08998 * 117.49893 * 252.51006 * 24 23 22 43 43 H 1.09002 * 117.51736 * 107.48096 * 24 23 22 44 44 H 1.09002 * 115.54917 * 97.44256 * 26 25 21 45 45 H 1.09005 * 117.49541 * 0.02562 * 27 26 25 46 46 H 1.08997 * 117.49569 * 145.01952 * 27 26 25 47 47 H 1.08995 * 117.49910 * 214.97721 * 28 26 25 48 48 H 1.08995 * 117.49897 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 1 5.9148 -2.0470 -0.8419 13 7 6.0412 -2.0514 1.2552 14 6 6.0539 -4.0519 -0.1240 15 8 6.4279 -4.6511 0.8618 16 7 6.0874 -4.6518 -1.3305 17 6 6.5762 -6.0276 -1.4510 18 6 6.5115 -6.4590 -2.8935 19 7 7.4144 -6.2354 -3.8091 20 7 7.0332 -6.7448 -4.9267 21 6 5.8700 -7.3169 -4.7746 22 6 5.0783 -8.0283 -5.8416 23 6 5.5813 -7.9234 -7.2826 24 6 5.7286 -9.2385 -6.5149 25 7 5.5035 -7.1479 -3.4813 26 6 4.2692 -7.6168 -2.8465 27 6 2.9508 -7.3307 -3.5682 28 6 3.3108 -6.5581 -2.2975 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6808 0.8905 31 1 3.8752 -0.6796 -0.8894 32 1 3.6585 -3.1501 -0.8904 33 1 3.6579 -3.1505 0.8897 34 1 5.7177 -2.5803 2.0512 35 1 7.0477 -1.9808 1.2528 36 1 5.7878 -4.1727 -2.1189 37 1 5.9555 -6.6881 -0.8457 38 1 7.6079 -6.0784 -1.1030 39 1 4.0000 -8.0583 -5.6858 40 1 4.8338 -7.8842 -8.0751 41 1 6.4846 -7.3394 -7.4591 42 1 6.7290 -9.5201 -6.1863 43 1 5.0781 -10.0647 -6.8019 44 1 4.3499 -8.5554 -2.2981 45 1 3.0018 -6.7939 -4.5155 46 1 2.1638 -8.0812 -3.4949 47 1 2.7605 -6.8003 -1.3884 48 1 3.5983 -5.5126 -2.4090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326037933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:55 Heat of formation + Delta-G solvation = 90.617498 kcal Electronic energy + Delta-G solvation = -28693.590177 eV Core-core repulsion = 24786.503237 eV Total energy + Delta-G solvation = -3907.086940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55936 -39.91153 -38.12662 -37.61140 -35.64249 -35.05429 -33.18233 -32.80108 -31.18586 -30.53087 -27.85191 -26.22463 -24.98813 -23.91651 -23.31708 -22.80869 -22.73588 -20.86915 -20.62884 -20.43967 -19.96344 -17.96674 -17.28342 -17.02503 -16.68428 -16.40730 -15.93996 -15.63601 -15.38739 -15.00749 -14.92065 -14.40049 -14.12765 -14.01151 -13.65727 -13.38016 -13.23251 -12.72786 -12.59305 -12.44037 -12.11899 -11.99737 -11.80338 -11.69530 -11.65888 -11.45090 -11.33067 -11.08725 -10.98839 -10.91090 -10.52928 -10.51962 -10.35366 -9.97676 -9.82814 -9.63580 -9.33873 -9.27965 -9.14929 -8.54332 -8.43927 -6.03390 -4.01153 1.25832 1.90917 2.37802 2.59981 2.88554 3.22534 3.34135 3.42194 3.43128 3.50161 3.70223 3.78411 4.05674 4.11842 4.29730 4.37784 4.44051 4.48724 4.59272 4.62425 4.70696 4.90813 5.05093 5.13837 5.21019 5.25643 5.27613 5.31306 5.36153 5.39683 5.42862 5.51326 5.56381 5.61908 5.62681 5.73541 5.81095 6.12810 6.22883 6.40333 6.47655 6.80970 7.17217 7.31553 7.39059 7.55045 7.63054 7.82733 8.10778 8.40721 8.53200 9.00542 9.59962 11.09951 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.002844 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.911069 B = 9841.419761 C =10925.271096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.521 4.521 8 H 0.068 0.932 9 C -0.005 4.005 10 C -0.085 4.085 11 C 0.076 3.924 12 H 0.099 0.901 13 N -0.810 5.810 14 C 0.489 3.511 15 O -0.548 6.548 16 N -0.725 5.725 17 C 0.213 3.787 18 C 0.159 3.841 19 N -0.272 5.272 20 N -0.292 5.292 21 C 0.218 3.782 22 C -0.093 4.093 23 C -0.148 4.148 24 C -0.157 4.157 25 N -0.434 5.434 26 C 0.036 3.964 27 C -0.163 4.163 28 C -0.156 4.156 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.008 0.992 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.350 0.650 35 H 0.337 0.663 36 H 0.405 0.595 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.142 0.858 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 -19.926 -10.709 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.559 4.559 8 H 0.086 0.914 9 C -0.042 4.042 10 C -0.124 4.124 11 C -0.040 4.040 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.275 3.725 15 O -0.425 6.425 16 N -0.380 5.380 17 C 0.087 3.913 18 C -0.108 4.108 19 N -0.113 5.113 20 N -0.132 5.132 21 C -0.048 4.048 22 C -0.114 4.114 23 C -0.186 4.186 24 C -0.195 4.195 25 N -0.123 5.123 26 C -0.068 4.068 27 C -0.201 4.201 28 C -0.194 4.194 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.164 0.836 35 H 0.149 0.851 36 H 0.239 0.761 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.159 0.841 45 H 0.125 0.875 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.589 -19.083 -10.790 24.346 hybrid contribution -0.496 -0.370 0.316 0.695 sum 10.093 -19.453 -10.475 24.290 Atomic orbital electron populations 1.69920 1.06369 1.26871 1.51408 1.25007 0.94694 0.99240 0.94518 0.86786 0.80754 0.83445 0.78448 1.20507 1.21587 1.18351 1.21152 0.89693 0.94278 1.50807 0.91357 1.19492 0.96363 0.91139 0.97256 1.21457 0.87922 1.01639 1.01334 1.21880 0.99366 0.87497 0.95268 0.88292 1.59023 1.15547 1.55908 1.03294 1.22691 0.76778 0.90929 0.82085 1.90670 1.48396 1.66499 1.36938 1.46157 1.66906 1.14040 1.10849 1.19378 1.02310 0.84403 0.85254 1.24612 0.87264 1.00352 0.98554 1.74325 1.22984 1.18411 0.95548 1.74266 1.09054 1.12661 1.17266 1.23770 0.94907 1.01817 0.84294 1.20251 0.97666 1.02502 0.90935 1.23046 1.03973 0.99955 0.91635 1.23063 1.02439 0.91490 1.02517 1.45435 1.16407 1.41527 1.08947 1.22151 0.79446 1.01025 1.04171 1.23433 0.95000 1.03726 0.97927 1.23481 0.99401 0.97687 0.98818 0.92820 0.94704 0.97352 0.92472 0.92117 0.83574 0.85141 0.76064 0.89593 0.88270 0.85451 0.87663 0.87141 0.88228 0.87714 0.84090 0.87491 0.86343 0.86158 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.02 7.99 -52.49 -0.42 1.60 16 9 C -0.01 -0.12 3.93 -27.88 -0.11 -0.22 16 10 C -0.09 -1.55 4.78 -26.73 -0.13 -1.68 16 11 C 0.08 1.14 3.15 -68.87 -0.22 0.92 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 13 N -0.81 -12.25 8.44 -5.66 -0.05 -12.29 16 14 C 0.49 6.89 7.07 -10.98 -0.08 6.81 16 15 O -0.55 -9.07 16.25 5.56 0.09 -8.98 16 16 N -0.73 -8.50 5.55 -61.48 -0.34 -8.84 16 17 C 0.21 2.34 6.07 -5.19 -0.03 2.31 16 18 C 0.16 1.87 7.38 -154.98 -1.14 0.72 16 19 N -0.27 -3.89 12.21 32.80 0.40 -3.49 16 20 N -0.29 -4.02 11.83 32.80 0.39 -3.64 16 21 C 0.22 2.38 7.44 -154.99 -1.15 1.22 16 22 C -0.09 -0.70 5.79 -91.77 -0.53 -1.23 16 23 C -0.15 -0.99 10.15 -26.74 -0.27 -1.27 16 24 C -0.16 -0.97 10.23 -26.73 -0.27 -1.24 16 25 N -0.43 -4.34 3.03 -103.61 -0.31 -4.66 16 26 C 0.04 0.26 6.00 -67.93 -0.41 -0.15 16 27 C -0.16 -0.99 8.96 -26.73 -0.24 -1.23 16 28 C -0.16 -1.23 10.44 -26.73 -0.28 -1.51 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 31 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.35 5.36 8.58 -39.29 -0.34 5.02 16 35 H 0.34 4.42 9.06 -39.29 -0.36 4.06 16 36 H 0.40 4.51 8.46 -40.82 -0.35 4.16 16 37 H 0.09 0.89 7.82 -51.93 -0.41 0.48 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.13 0.73 5.90 -51.93 -0.31 0.42 16 40 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.11 0.70 7.12 -51.93 -0.37 0.33 16 46 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.79 401.11 -10.48 -45.27 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.51 Total: 9.97 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -5.29 Total: -9.50 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.86 Total: -59.85 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.79 -10.48 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326037933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.889 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds