Wall clock time and date at job start Tue Mar 31 2020 17:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.47074 * 120.94736 * 180.02562 * 16 14 11 18 18 C 1.53331 * 109.25259 * 116.42928 * 17 16 14 19 19 N 1.46215 * 109.18255 * 45.62676 * 18 17 16 20 20 C 1.34793 * 128.60398 * 161.67069 * 19 18 17 21 21 C 1.50700 * 126.43981 * 359.50880 * 20 19 18 22 22 C 1.52999 * 109.47271 * 89.99836 * 21 20 19 23 23 C 1.52994 * 117.49948 * 243.74917 * 22 21 20 24 24 C 1.53003 * 117.49888 * 175.08525 * 22 21 20 25 25 N 1.30822 * 107.11931 * 179.52587 * 20 19 18 26 26 N 1.28930 * 109.73910 * 0.14262 * 25 20 19 27 27 C 1.29719 * 109.42662 * 0.09706 * 26 25 20 28 28 C 1.47523 * 120.94440 * 359.71349 * 16 14 11 29 29 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 35 35 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 36 36 H 1.09006 * 109.50637 * 236.36296 * 17 16 14 37 37 H 1.08999 * 109.51001 * 356.49380 * 17 16 14 38 38 H 1.09004 * 109.51908 * 165.54188 * 18 17 16 39 39 H 1.09004 * 109.51877 * 285.65398 * 18 17 16 40 40 H 1.09000 * 109.46847 * 210.00030 * 21 20 19 41 41 H 1.09001 * 109.46973 * 329.99680 * 21 20 19 42 42 H 1.09004 * 115.54758 * 29.41797 * 22 21 20 43 43 H 1.09004 * 117.50007 * 359.97438 * 23 22 21 44 44 H 1.08998 * 117.50326 * 145.02491 * 23 22 21 45 45 H 1.08995 * 117.49597 * 214.97703 * 24 22 21 46 46 H 1.08992 * 117.49601 * 0.02562 * 24 22 21 47 47 H 1.08996 * 109.96370 * 342.56394 * 28 16 14 48 48 H 1.08997 * 109.96009 * 103.84977 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9156 -2.0474 -0.8384 13 7 6.0403 -2.0504 1.2588 14 6 6.0541 -4.0519 -0.1191 15 8 6.4275 -4.6505 0.8673 16 7 6.0886 -4.6526 -1.3252 17 6 6.5744 -6.0333 -1.4688 18 6 5.4292 -6.9231 -1.9665 19 7 4.7399 -6.2488 -3.0657 20 6 3.9221 -6.7790 -3.9969 21 6 3.5313 -8.2289 -4.1238 22 6 2.2668 -8.4901 -3.3031 23 6 2.3781 -9.4565 -2.1222 24 6 1.6407 -9.8832 -3.3940 25 7 3.5318 -5.7984 -4.7698 26 7 4.0630 -4.6929 -4.3726 27 6 4.8111 -4.9211 -3.3377 28 6 5.6339 -3.9462 -2.5378 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6587 -3.1509 -0.8875 33 1 3.6580 -3.1497 0.8925 34 1 5.7162 -2.5789 2.0548 35 1 7.0469 -1.9798 1.2571 36 1 7.3935 -6.0581 -2.1877 37 1 6.9255 -6.3980 -0.5034 38 1 5.8321 -7.8731 -2.3175 39 1 4.7278 -7.1037 -1.1519 40 1 3.3397 -8.4632 -5.1710 41 1 4.3412 -8.8573 -3.7533 42 1 1.5917 -7.6409 -3.1966 43 1 3.3521 -9.9066 -1.9303 44 1 1.7759 -9.2434 -1.2390 45 1 0.5538 -9.9505 -3.3469 46 1 2.1299 -10.6137 -4.0382 47 1 5.0248 -3.0857 -2.2608 48 1 6.4936 -3.6215 -3.1238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326626286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:01 Heat of formation + Delta-G solvation = 72.725242 kcal Electronic energy + Delta-G solvation = -29449.416438 eV Core-core repulsion = 25541.553631 eV Total energy + Delta-G solvation = -3907.862807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.48142 -40.38315 -37.93976 -37.20473 -35.64036 -34.63679 -32.79436 -32.19426 -30.98761 -30.55192 -28.64547 -27.02232 -26.30871 -24.78498 -23.04809 -22.76340 -22.06354 -20.98501 -20.69373 -20.23750 -18.97132 -17.77682 -17.32773 -16.94699 -16.72940 -16.36284 -15.90950 -15.63776 -15.44645 -14.81661 -14.60249 -14.47895 -14.13229 -14.09946 -13.76455 -13.51835 -13.27244 -13.06765 -12.69779 -12.59712 -12.47047 -12.28442 -11.96779 -11.86723 -11.71851 -11.55542 -11.10244 -10.90225 -10.78805 -10.58997 -10.46808 -10.34076 -10.30711 -9.98358 -9.82867 -9.62318 -9.39025 -9.12617 -9.06223 -8.60188 -8.44938 -5.97698 -3.95917 1.59626 2.04962 2.31345 2.60706 2.74280 3.37988 3.38332 3.45502 3.52046 3.85778 3.93873 3.98096 4.22237 4.34514 4.44203 4.48638 4.52811 4.59326 4.67888 4.73143 4.77871 4.89749 4.97070 5.12468 5.16076 5.18155 5.24664 5.25168 5.29132 5.37737 5.50324 5.53031 5.55748 5.71317 5.77251 5.84966 5.90206 5.98619 6.18646 6.36203 6.61699 6.77465 6.88611 7.18729 7.31987 7.52469 7.55642 7.84135 7.85908 8.58189 8.61824 9.06163 9.64672 11.15843 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003590 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.738750 B = 7797.313563 C = 9068.938553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.067 0.933 9 C -0.003 4.003 10 C -0.089 4.089 11 C 0.073 3.927 12 H 0.103 0.897 13 N -0.808 5.808 14 C 0.496 3.504 15 O -0.541 6.541 16 N -0.621 5.621 17 C 0.096 3.904 18 C 0.090 3.910 19 N -0.464 5.464 20 C 0.185 3.815 21 C 0.002 3.998 22 C -0.153 4.153 23 C -0.182 4.182 24 C -0.170 4.170 25 N -0.289 5.289 26 N -0.270 5.270 27 C 0.164 3.836 28 C 0.192 3.808 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.010 0.990 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.351 0.649 35 H 0.337 0.663 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.132 0.868 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.257 -19.811 -5.939 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.085 0.915 9 C -0.040 4.040 10 C -0.128 4.128 11 C -0.043 4.043 12 H 0.120 0.880 13 N -0.336 5.336 14 C 0.284 3.716 15 O -0.417 6.417 16 N -0.357 5.357 17 C -0.028 4.028 18 C -0.034 4.034 19 N -0.155 5.155 20 C -0.082 4.082 21 C -0.038 4.038 22 C -0.173 4.173 23 C -0.219 4.219 24 C -0.207 4.207 25 N -0.129 5.129 26 N -0.110 5.110 27 C -0.105 4.105 28 C 0.067 3.933 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.150 0.850 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.199 -18.599 -6.669 24.331 hybrid contribution 1.320 -0.868 1.053 1.899 sum 15.519 -19.468 -5.616 25.522 Atomic orbital electron populations 1.69922 1.06393 1.26849 1.51239 1.25002 0.94687 0.99203 0.94477 0.86784 0.80657 0.83462 0.78515 1.20343 1.21614 1.18411 1.21120 0.89606 0.94326 1.50960 0.91471 1.19478 0.96515 0.90710 0.97298 1.21538 0.87614 1.02058 1.01551 1.21979 0.99615 0.87199 0.95463 0.87952 1.59009 1.15485 1.55898 1.03189 1.22836 0.76143 0.91221 0.81393 1.90660 1.48357 1.66651 1.36041 1.48400 1.65192 1.14194 1.07926 1.21875 0.94695 0.81938 1.04267 1.22392 0.95895 0.96709 0.88384 1.45826 1.36853 1.08451 1.24410 1.24530 0.95212 0.98766 0.89681 1.19572 0.96282 0.85352 1.02567 1.22239 0.99051 0.94848 1.01129 1.23116 1.02415 1.03426 0.92899 1.22982 1.00350 0.96825 1.00585 1.74539 1.20793 0.94358 1.23258 1.74117 1.08667 1.18614 1.09605 1.24616 1.03029 0.84093 0.98733 1.20332 0.97142 0.92454 0.83323 0.92812 0.94680 0.97181 0.92275 0.92103 0.83491 0.85124 0.89920 0.86374 0.87819 0.88643 0.87694 0.90019 0.87078 0.88785 0.88538 0.88373 0.88505 0.85011 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 -0.06 3.93 -27.89 -0.11 -0.17 16 10 C -0.09 -1.68 4.44 -26.73 -0.12 -1.80 16 11 C 0.07 1.07 2.30 -68.86 -0.16 0.91 16 12 H 0.10 1.34 7.06 -51.93 -0.37 0.97 16 13 N -0.81 -11.68 8.44 -5.65 -0.05 -11.72 16 14 C 0.50 6.69 6.95 -10.98 -0.08 6.61 16 15 O -0.54 -8.38 15.68 5.56 0.09 -8.30 16 16 N -0.62 -6.84 2.98 -173.63 -0.52 -7.36 16 17 C 0.10 0.78 6.43 -3.56 -0.02 0.76 16 18 C 0.09 0.71 6.92 -4.02 -0.03 0.68 16 19 N -0.46 -5.29 3.11 -110.98 -0.35 -5.63 16 20 C 0.19 2.26 7.27 -155.37 -1.13 1.13 16 21 C 0.00 0.01 5.89 -27.88 -0.16 -0.15 16 22 C -0.15 -1.34 5.72 -90.62 -0.52 -1.86 16 23 C -0.18 -1.31 10.18 -26.69 -0.27 -1.58 16 24 C -0.17 -1.17 10.26 -26.69 -0.27 -1.44 16 25 N -0.29 -4.67 12.23 32.71 0.40 -4.27 16 26 N -0.27 -4.56 12.21 32.68 0.40 -4.16 16 27 C 0.16 2.23 7.86 -155.51 -1.22 1.01 16 28 C 0.19 2.17 6.17 -4.70 -0.03 2.14 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.03 0.84 6.81 -51.93 -0.35 0.49 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 32 H 0.06 1.12 6.74 -51.93 -0.35 0.77 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.35 5.19 8.58 -39.29 -0.34 4.86 16 35 H 0.34 4.06 9.06 -39.29 -0.36 3.70 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 0.98 7.01 -51.93 -0.36 0.61 16 38 H 0.10 0.47 7.76 -51.93 -0.40 0.06 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.45 7.41 -51.93 -0.38 0.07 16 42 H 0.11 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.13 1.66 4.87 -51.93 -0.25 1.41 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -36.63 386.66 -10.01 -46.64 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.36 Total: 6.50 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -4.55 Total: -7.17 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.66 Total: -60.83 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.63 -10.01 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326626286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.369 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds