Wall clock time and date at job start Tue Mar 31 2020 17:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.47074 * 120.94736 * 180.02562 * 16 14 11 18 18 C 1.53331 * 109.25259 * 116.42928 * 17 16 14 19 19 N 1.46215 * 109.18255 * 45.62676 * 18 17 16 20 20 C 1.34793 * 128.60398 * 161.67069 * 19 18 17 21 21 C 1.50700 * 126.43981 * 359.50880 * 20 19 18 22 22 C 1.52999 * 109.47271 * 89.99836 * 21 20 19 23 23 C 1.52994 * 117.49948 * 243.74917 * 22 21 20 24 24 C 1.53003 * 117.49888 * 175.08525 * 22 21 20 25 25 N 1.30822 * 107.11931 * 179.52587 * 20 19 18 26 26 N 1.28930 * 109.73910 * 0.14262 * 25 20 19 27 27 C 1.29719 * 109.42662 * 0.09706 * 26 25 20 28 28 C 1.47523 * 120.94440 * 359.71349 * 16 14 11 29 29 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 35 35 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 36 36 H 1.09006 * 109.50637 * 236.36296 * 17 16 14 37 37 H 1.08999 * 109.51001 * 356.49380 * 17 16 14 38 38 H 1.09004 * 109.51908 * 165.54188 * 18 17 16 39 39 H 1.09004 * 109.51877 * 285.65398 * 18 17 16 40 40 H 1.09000 * 109.46847 * 210.00030 * 21 20 19 41 41 H 1.09001 * 109.46973 * 329.99680 * 21 20 19 42 42 H 1.09004 * 115.54758 * 29.41797 * 22 21 20 43 43 H 1.09004 * 117.50007 * 359.97438 * 23 22 21 44 44 H 1.08998 * 117.50326 * 145.02491 * 23 22 21 45 45 H 1.08995 * 117.49597 * 214.97703 * 24 22 21 46 46 H 1.08992 * 117.49601 * 0.02562 * 24 22 21 47 47 H 1.08996 * 109.96370 * 342.56394 * 28 16 14 48 48 H 1.08997 * 109.96009 * 103.84977 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9156 -2.0474 -0.8384 13 7 6.0403 -2.0504 1.2588 14 6 6.0541 -4.0519 -0.1191 15 8 6.4275 -4.6505 0.8673 16 7 6.0886 -4.6526 -1.3252 17 6 6.5744 -6.0333 -1.4688 18 6 5.4292 -6.9231 -1.9665 19 7 4.7399 -6.2488 -3.0657 20 6 3.9221 -6.7790 -3.9969 21 6 3.5313 -8.2289 -4.1238 22 6 2.2668 -8.4901 -3.3031 23 6 2.3781 -9.4565 -2.1222 24 6 1.6407 -9.8832 -3.3940 25 7 3.5318 -5.7984 -4.7698 26 7 4.0630 -4.6929 -4.3726 27 6 4.8111 -4.9211 -3.3377 28 6 5.6339 -3.9462 -2.5378 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6587 -3.1509 -0.8875 33 1 3.6580 -3.1497 0.8925 34 1 5.7162 -2.5789 2.0548 35 1 7.0469 -1.9798 1.2571 36 1 7.3935 -6.0581 -2.1877 37 1 6.9255 -6.3980 -0.5034 38 1 5.8321 -7.8731 -2.3175 39 1 4.7278 -7.1037 -1.1519 40 1 3.3397 -8.4632 -5.1710 41 1 4.3412 -8.8573 -3.7533 42 1 1.5917 -7.6409 -3.1966 43 1 3.3521 -9.9066 -1.9303 44 1 1.7759 -9.2434 -1.2390 45 1 0.5538 -9.9505 -3.3469 46 1 2.1299 -10.6137 -4.0382 47 1 5.0248 -3.0857 -2.2608 48 1 6.4936 -3.6215 -3.1238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326626286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:00 Heat of formation + Delta-G solvation = 46.949700 kcal Electronic energy + Delta-G solvation = -29450.534149 eV Core-core repulsion = 25541.553631 eV Total energy + Delta-G solvation = -3908.980518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.45223 -41.42961 -38.56940 -38.15063 -37.02530 -35.58396 -34.81840 -33.09073 -32.34290 -31.78042 -29.49767 -28.47493 -27.33075 -25.99397 -24.33884 -23.34222 -22.89914 -22.25343 -21.75111 -21.39832 -19.99548 -18.92472 -18.69038 -18.20620 -17.84754 -17.31620 -16.91911 -16.63404 -16.45085 -16.22086 -15.66411 -15.40293 -15.24501 -15.13703 -14.83249 -14.71380 -14.44362 -14.11692 -14.00246 -13.81185 -13.52927 -13.48884 -13.02114 -12.81313 -12.63993 -12.59244 -12.57033 -12.38095 -12.05987 -11.79214 -11.63784 -11.56100 -11.35716 -11.35206 -11.21174 -11.16190 -10.95359 -10.73024 -10.34391 -10.02934 -9.72296 -8.26815 -6.31002 0.66758 1.20003 1.25069 1.40247 1.42655 1.56640 1.68941 1.73858 2.40615 2.76642 2.97890 3.10074 3.15224 3.23861 3.33097 3.57438 3.73447 3.79813 3.86708 3.92719 3.96437 4.04151 4.09204 4.14924 4.18179 4.22692 4.37548 4.46197 4.57848 4.60762 4.65613 4.70349 4.73661 4.77158 4.90338 4.97155 5.02695 5.05044 5.09082 5.20546 5.24759 5.43826 5.61475 5.70047 5.75876 5.89410 6.09414 6.28428 6.49677 6.77331 6.80910 7.33697 7.59412 8.90552 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003590 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.738750 B = 7797.313563 C = 9068.938553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.533 4.533 8 H 0.019 0.981 9 C 0.005 3.995 10 C -0.077 4.077 11 C 0.081 3.919 12 H 0.124 0.876 13 N -0.815 5.815 14 C 0.502 3.498 15 O -0.560 6.560 16 N -0.615 5.615 17 C 0.094 3.906 18 C 0.086 3.914 19 N -0.462 5.462 20 C 0.196 3.804 21 C 0.008 3.992 22 C -0.172 4.172 23 C -0.175 4.175 24 C -0.158 4.158 25 N -0.342 5.342 26 N -0.321 5.321 27 C 0.159 3.841 28 C 0.194 3.806 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.347 0.653 35 H 0.353 0.647 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.934 -21.048 -6.077 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.571 4.571 8 H 0.038 0.962 9 C -0.033 4.033 10 C -0.116 4.116 11 C -0.035 4.035 12 H 0.142 0.858 13 N -0.345 5.345 14 C 0.289 3.711 15 O -0.438 6.438 16 N -0.349 5.349 17 C -0.028 4.028 18 C -0.036 4.036 19 N -0.153 5.153 20 C -0.073 4.073 21 C -0.031 4.031 22 C -0.192 4.192 23 C -0.212 4.212 24 C -0.195 4.195 25 N -0.181 5.181 26 N -0.160 5.160 27 C -0.111 4.111 28 C 0.069 3.931 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.167 0.833 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.139 0.861 47 H 0.133 0.867 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.904 -19.869 -6.823 27.603 hybrid contribution 0.054 -0.614 1.106 1.267 sum 17.958 -20.483 -5.717 27.834 Atomic orbital electron populations 1.70095 1.08585 1.28113 1.52993 1.26068 0.95587 1.03821 0.94004 0.85599 0.79793 0.77648 0.79284 1.19066 1.21430 1.16053 1.21525 0.92672 0.92595 1.50344 0.96215 1.19354 0.92677 0.93665 0.97595 1.21240 0.91160 0.98915 1.00238 1.21732 0.96236 0.88997 0.96524 0.85844 1.58972 1.16826 1.55885 1.02830 1.22357 0.76219 0.90611 0.81868 1.90658 1.49538 1.66866 1.36777 1.48334 1.64186 1.15440 1.06978 1.22149 0.95398 0.79907 1.05352 1.22723 0.95449 0.98204 0.87246 1.46032 1.36643 1.07809 1.24780 1.25212 0.93750 0.99714 0.88580 1.19774 0.96991 0.83240 1.03119 1.22061 0.99265 0.94592 1.03275 1.23210 1.03556 1.02256 0.92138 1.23083 1.00338 0.95542 1.00576 1.74415 1.22734 0.95271 1.25683 1.73981 1.10429 1.19812 1.11760 1.24940 1.02507 0.85461 0.98209 1.20441 0.97877 0.91332 0.83405 0.92649 0.94604 0.95885 0.93139 0.94071 0.83879 0.83311 0.87047 0.86000 0.83334 0.89432 0.87084 0.86182 0.91150 0.86135 0.89828 0.88931 0.86111 0.86652 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.38 13.96 21.45 0.30 -62.08 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 7 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 8 H 0.02 1.31 7.99 -2.91 -0.02 1.28 16 9 C 0.00 0.21 3.93 29.85 0.12 0.33 16 10 C -0.08 -2.93 4.44 30.59 0.14 -2.80 16 11 C 0.08 2.24 2.30 44.17 0.10 2.34 16 12 H 0.12 2.91 7.06 -2.39 -0.02 2.89 16 13 N -0.82 -22.07 8.44 -171.80 -1.45 -23.52 16 14 C 0.50 12.61 6.95 87.66 0.61 13.22 16 15 O -0.56 -16.32 15.68 -3.01 -0.05 -16.37 16 16 N -0.62 -12.12 2.98 -821.63 -2.45 -14.56 16 17 C 0.09 1.21 6.43 86.38 0.56 1.76 16 18 C 0.09 1.07 6.92 86.54 0.60 1.67 16 19 N -0.46 -9.85 3.11 -505.02 -1.57 -11.42 16 20 C 0.20 4.67 7.27 138.11 1.00 5.68 16 21 C 0.01 0.11 5.89 29.85 0.18 0.29 16 22 C -0.17 -2.91 5.72 -10.79 -0.06 -2.98 16 23 C -0.17 -2.20 10.18 30.62 0.31 -1.88 16 24 C -0.16 -1.90 10.26 30.62 0.31 -1.59 16 25 N -0.34 -11.40 12.23 -50.42 -0.62 -12.02 16 26 N -0.32 -11.16 12.21 -50.52 -0.62 -11.78 16 27 C 0.16 4.27 7.86 138.10 1.09 5.35 16 28 C 0.19 4.07 6.17 85.40 0.53 4.59 16 29 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 30 H 0.04 1.67 6.81 -2.39 -0.02 1.65 16 31 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 32 H 0.05 1.98 6.74 -2.39 -0.02 1.97 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.35 9.90 8.58 -89.69 -0.77 9.13 16 35 H 0.35 7.62 9.06 -89.69 -0.81 6.80 16 36 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.12 1.59 7.01 -2.39 -0.02 1.57 16 38 H 0.15 0.55 7.76 -2.38 -0.02 0.53 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.12 0.79 7.41 -2.39 -0.02 0.77 16 42 H 0.07 1.76 8.07 -2.38 -0.02 1.74 16 43 H 0.12 0.88 8.03 -2.39 -0.02 0.86 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.12 2.84 4.87 -2.39 -0.01 2.83 16 48 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -85.52 386.66 0.98 -84.53 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.64 Total: 24.91 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 6.18 Total: -4.94 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -6.40 Total: -135.39 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -85.52 0.98 -84.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326626286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.483 kcal (2) G-P(sol) polarization free energy of solvation -85.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds