Wall clock time and date at job start Tue Mar 31 2020 18:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48504 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99822 * 3 2 1 6 6 H 1.48495 * 109.47173 * 60.00348 * 3 2 1 7 7 C 1.38815 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99466 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99831 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47007 * 175.81174 * 10 9 7 12 12 H 1.09003 * 109.58798 * 48.10761 * 11 10 9 13 13 C 1.53194 * 109.58571 * 168.39522 * 11 10 9 14 14 C 1.53044 * 109.31235 * 174.42358 * 13 11 10 15 15 C 1.53044 * 109.53509 * 298.63074 * 14 13 11 16 16 C 1.53195 * 109.31298 * 61.36525 * 15 14 13 17 17 N 1.46929 * 109.58746 * 287.82357 * 11 10 9 18 18 C 1.34777 * 120.62771 * 6.61310 * 17 11 10 19 19 O 1.21281 * 119.99970 * 4.83596 * 18 17 11 20 20 C 1.50701 * 120.00166 * 184.83959 * 18 17 11 21 21 H 1.09004 * 109.68629 * 34.89275 * 20 18 17 22 22 C 1.53433 * 109.69595 * 155.44315 * 20 18 17 23 23 C 1.53106 * 109.55292 * 169.43831 * 22 20 18 24 24 C 1.53419 * 109.57619 * 289.93978 * 23 22 20 25 25 C 1.50593 * 108.33716 * 49.83248 * 24 23 22 26 26 N 1.32910 * 129.17079 * 163.46966 * 25 24 23 27 27 N 1.29011 * 108.63655 * 180.10769 * 26 25 24 28 28 N 1.29104 * 110.26428 * 359.97131 * 27 26 25 29 29 H 0.97001 * 126.01216 * 179.97438 * 28 27 26 30 30 C 1.34402 * 107.98188 * 359.93291 * 28 27 26 31 31 H 0.96992 * 120.00320 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00278 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47214 * 295.80742 * 10 9 7 34 34 H 1.08993 * 109.46947 * 55.80989 * 10 9 7 35 35 H 1.09000 * 109.49901 * 294.36898 * 13 11 10 36 36 H 1.08992 * 109.50071 * 54.46895 * 13 11 10 37 37 H 1.08994 * 109.46484 * 58.64718 * 14 13 11 38 38 H 1.09002 * 109.46155 * 178.61642 * 14 13 11 39 39 H 1.09001 * 109.50172 * 181.31564 * 15 14 13 40 40 H 1.08995 * 109.50100 * 301.38609 * 15 14 13 41 41 H 1.09006 * 109.58162 * 65.15291 * 16 15 14 42 42 H 1.08994 * 109.58526 * 185.43288 * 16 15 14 43 43 H 1.09002 * 109.45329 * 289.45972 * 22 20 18 44 44 H 1.08999 * 109.45680 * 49.42348 * 22 20 18 45 45 H 1.08994 * 109.45768 * 49.97808 * 23 22 20 46 46 H 1.09010 * 109.44974 * 169.93483 * 23 22 20 47 47 H 1.09000 * 109.69091 * 169.54218 * 24 23 22 48 48 H 1.08997 * 109.69325 * 290.07702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0673 -4.8177 0.1082 12 1 0.2611 -4.6773 -0.6118 13 6 1.7897 -6.1375 -0.1803 14 6 0.8293 -7.3039 0.0634 15 6 0.3876 -7.3055 1.5287 16 6 -0.3506 -5.9989 1.8367 17 7 0.5110 -4.8672 1.4672 18 6 0.7885 -3.8952 2.3586 19 8 1.4305 -2.9246 2.0171 20 6 0.3011 -4.0143 3.7796 21 1 0.3215 -5.0595 4.0884 22 6 1.1993 -3.1839 4.7058 23 6 0.5581 -3.0906 6.0929 24 6 -0.6909 -2.2023 6.0232 25 6 -1.5450 -2.6750 4.8765 26 7 -2.8232 -2.4168 4.6197 27 7 -3.1568 -3.0270 3.5330 28 7 -2.1487 -3.6796 3.0591 29 1 -2.1459 -4.2173 2.2518 30 6 -1.1034 -3.4821 3.8805 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0016 33 1 2.6265 -3.7482 -0.9240 34 1 2.7405 -3.6823 0.8511 35 1 2.1221 -6.1509 -1.2183 36 1 2.6519 -6.2322 0.4795 37 1 -0.0444 -7.1953 -0.5791 38 1 1.3333 -8.2431 -0.1649 39 1 -0.2779 -8.1501 1.7072 40 1 1.2630 -7.3897 2.1726 41 1 -1.2741 -5.9562 1.2592 42 1 -0.5825 -5.9524 2.9007 43 1 2.1757 -3.6614 4.7885 44 1 1.3189 -2.1821 4.2930 45 1 0.2760 -4.0878 6.4303 46 1 1.2718 -2.6583 6.7944 47 1 -1.2506 -2.2818 6.9552 48 1 -0.3959 -1.1659 5.8594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326736185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:42 Heat of formation + Delta-G solvation = 102.987924 kcal Electronic energy + Delta-G solvation = -31405.697221 eV Core-core repulsion = 27499.146703 eV Total energy + Delta-G solvation = -3906.550518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.31038 -40.33233 -37.62556 -36.39035 -34.71465 -33.63804 -32.60954 -32.02819 -30.23703 -29.97172 -29.85696 -26.30052 -24.77686 -24.32819 -23.19513 -22.78805 -22.49536 -21.36307 -20.70185 -19.49502 -18.91818 -18.02456 -17.09841 -16.61143 -15.86299 -15.73826 -15.26810 -14.77574 -14.56832 -14.55487 -14.13127 -13.97518 -13.70326 -13.61494 -13.49015 -13.35012 -13.00651 -12.53547 -12.41092 -12.25782 -12.06809 -11.85742 -11.42713 -11.26853 -11.18487 -11.15134 -11.03909 -10.94790 -10.79656 -10.72651 -10.67618 -10.44868 -10.36431 -10.16075 -9.87594 -9.54182 -8.92515 -8.73379 -8.37341 -8.19065 -6.52984 -5.55819 -2.76379 1.70094 2.68668 2.85035 3.11903 3.18241 3.54237 3.58831 3.61567 4.32347 4.50599 4.57773 4.62201 4.72476 4.77014 4.77272 4.86492 4.97872 5.02208 5.10825 5.19289 5.25910 5.35777 5.37134 5.47260 5.51510 5.60865 5.67924 5.69807 5.79135 5.82514 5.87130 5.89342 5.94928 5.98324 6.02547 6.08644 6.12277 6.23510 6.36852 6.44354 6.47010 6.54872 6.81280 6.95863 7.10751 7.73912 7.86916 8.60676 8.63280 8.77133 9.72901 10.30196 10.64427 11.68035 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.006533 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.876722 B = 4284.922305 C = 6371.321078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.021 4.021 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.202 4.202 8 H 0.064 0.936 9 N -0.694 5.694 10 C 0.162 3.838 11 C 0.142 3.858 12 H 0.068 0.932 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.131 4.131 16 C 0.099 3.901 17 N -0.619 5.619 18 C 0.465 3.535 19 O -0.411 6.411 20 C -0.029 4.029 21 H 0.101 0.899 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.034 4.034 25 C -0.010 4.010 26 N -0.260 5.260 27 N -0.086 5.086 28 N -0.375 5.375 29 H 0.444 0.556 30 C 0.005 3.995 31 H 0.249 0.751 32 H 0.377 0.623 33 H 0.013 0.987 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -18.619 8.931 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.215 4.215 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.334 4.334 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.034 3.966 11 C 0.039 3.961 12 H 0.086 0.914 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.169 4.169 16 C -0.025 4.025 17 N -0.358 5.358 18 C 0.248 3.752 19 O -0.275 6.275 20 C -0.053 4.053 21 H 0.118 0.882 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.073 4.073 25 C -0.150 4.150 26 N -0.126 5.126 27 N -0.065 5.065 28 N -0.094 5.094 29 H 0.290 0.710 30 C -0.131 4.131 31 H 0.059 0.941 32 H 0.210 0.790 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.341 -17.426 8.649 19.458 hybrid contribution 0.949 0.185 -0.542 1.108 sum 0.608 -17.241 8.107 19.062 Atomic orbital electron populations 1.69643 1.04941 1.24823 1.59450 1.24590 0.95374 0.97152 1.04402 0.86202 0.78669 0.84978 0.76948 1.20867 1.22373 1.22273 1.19099 0.90595 0.84085 1.39643 0.91780 1.42178 1.05076 0.99639 1.86752 1.20844 0.93292 0.84914 0.97565 1.21505 0.96616 0.95657 0.82314 0.91444 1.21910 0.98505 0.94016 1.02153 1.21501 0.99605 0.98468 0.95986 1.21872 1.00770 0.96660 0.97640 1.21737 0.93481 0.86910 1.00390 1.48020 1.51418 1.23452 1.12912 1.20318 0.85109 0.83602 0.86182 1.91312 1.34012 1.27113 1.75106 1.20061 0.88441 1.00819 0.95942 0.88171 1.21530 0.97075 1.02233 0.93310 1.21631 0.96583 0.99996 0.97125 1.19982 0.93388 1.00159 0.93807 1.21621 0.92445 1.01101 0.99812 1.74772 1.12600 1.17488 1.07728 1.78514 1.11892 1.08642 1.07453 1.44714 1.07902 1.35334 1.21489 0.71025 1.21392 0.91971 1.05460 0.94311 0.94124 0.78981 0.96939 0.94285 0.90786 0.91487 0.91848 0.91849 0.91093 0.91320 0.92154 0.90380 0.90497 0.88966 0.91685 0.90318 0.89941 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.84 13.06 55.49 0.72 -29.11 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 3 Si 0.90 23.82 29.55 -169.99 -5.02 18.80 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 7 C -0.20 -5.85 9.19 -15.06 -0.14 -5.99 16 8 H 0.06 1.85 7.83 -52.48 -0.41 1.43 16 9 N -0.69 -17.72 3.23 -59.91 -0.19 -17.91 16 10 C 0.16 3.24 4.89 -4.04 -0.02 3.22 16 11 C 0.14 2.14 2.90 -67.60 -0.20 1.94 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.13 -1.43 5.35 -26.61 -0.14 -1.57 16 14 C -0.12 -1.02 5.88 -26.69 -0.16 -1.18 16 15 C -0.13 -1.03 6.08 -26.61 -0.16 -1.19 16 16 C 0.10 0.93 4.95 -3.69 -0.02 0.91 16 17 N -0.62 -8.43 2.98 -165.19 -0.49 -8.92 16 18 C 0.47 7.68 6.48 -10.98 -0.07 7.61 16 19 O -0.41 -9.03 9.26 5.56 0.05 -8.98 16 20 C -0.03 -0.38 2.03 -92.78 -0.19 -0.57 16 21 H 0.10 1.01 6.48 -51.93 -0.34 0.67 16 22 C -0.10 -1.33 4.95 -26.45 -0.13 -1.46 16 23 C -0.12 -1.18 5.90 -26.46 -0.16 -1.33 16 24 C -0.03 -0.43 6.30 -27.72 -0.17 -0.60 16 25 C -0.01 -0.16 7.11 -83.12 -0.59 -0.75 16 26 N -0.26 -4.81 12.40 33.16 0.41 -4.39 16 27 N -0.09 -1.55 13.40 60.35 0.81 -0.74 16 28 N -0.38 -5.79 6.86 33.39 0.23 -5.56 16 29 H 0.44 5.81 7.18 -190.07 -1.37 4.44 16 30 C 0.00 0.07 6.10 -82.50 -0.50 -0.43 16 31 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.38 10.38 7.56 -40.82 -0.31 10.08 16 33 H 0.01 0.26 8.10 -51.93 -0.42 -0.16 16 34 H 0.04 0.84 6.43 -51.93 -0.33 0.51 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.52 7.70 -51.93 -0.40 0.12 16 42 H 0.08 0.65 5.34 -51.93 -0.28 0.38 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.55 7.46 -51.93 -0.39 1.16 16 45 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 46 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -36.29 365.75 -9.17 -45.45 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.45 Total: 7.96 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.75 Total: -2.11 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: 1.49 Total: -66.64 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.05 Total: -8.98 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.02 Total: 18.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.29 -9.17 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326736185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.441 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds