Wall clock time and date at job start Tue Mar 31 2020 18:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48504 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99822 * 3 2 1 6 6 H 1.48495 * 109.47173 * 60.00348 * 3 2 1 7 7 C 1.38815 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99466 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99831 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47007 * 175.81174 * 10 9 7 12 12 H 1.09003 * 109.58798 * 48.10761 * 11 10 9 13 13 C 1.53194 * 109.58571 * 168.39522 * 11 10 9 14 14 C 1.53044 * 109.31235 * 174.42358 * 13 11 10 15 15 C 1.53044 * 109.53509 * 298.63074 * 14 13 11 16 16 C 1.53195 * 109.31298 * 61.36525 * 15 14 13 17 17 N 1.46929 * 109.58746 * 287.82357 * 11 10 9 18 18 C 1.34777 * 120.62771 * 6.61310 * 17 11 10 19 19 O 1.21281 * 119.99970 * 4.83596 * 18 17 11 20 20 C 1.50701 * 120.00166 * 184.83959 * 18 17 11 21 21 H 1.09004 * 109.68629 * 34.89275 * 20 18 17 22 22 C 1.53433 * 109.69595 * 155.44315 * 20 18 17 23 23 C 1.53106 * 109.55292 * 169.43831 * 22 20 18 24 24 C 1.53419 * 109.57619 * 289.93978 * 23 22 20 25 25 C 1.50593 * 108.33716 * 49.83248 * 24 23 22 26 26 N 1.32910 * 129.17079 * 163.46966 * 25 24 23 27 27 N 1.29011 * 108.63655 * 180.10769 * 26 25 24 28 28 N 1.29104 * 110.26428 * 359.97131 * 27 26 25 29 29 H 0.97001 * 126.01216 * 179.97438 * 28 27 26 30 30 C 1.34402 * 107.98188 * 359.93291 * 28 27 26 31 31 H 0.96992 * 120.00320 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00278 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47214 * 295.80742 * 10 9 7 34 34 H 1.08993 * 109.46947 * 55.80989 * 10 9 7 35 35 H 1.09000 * 109.49901 * 294.36898 * 13 11 10 36 36 H 1.08992 * 109.50071 * 54.46895 * 13 11 10 37 37 H 1.08994 * 109.46484 * 58.64718 * 14 13 11 38 38 H 1.09002 * 109.46155 * 178.61642 * 14 13 11 39 39 H 1.09001 * 109.50172 * 181.31564 * 15 14 13 40 40 H 1.08995 * 109.50100 * 301.38609 * 15 14 13 41 41 H 1.09006 * 109.58162 * 65.15291 * 16 15 14 42 42 H 1.08994 * 109.58526 * 185.43288 * 16 15 14 43 43 H 1.09002 * 109.45329 * 289.45972 * 22 20 18 44 44 H 1.08999 * 109.45680 * 49.42348 * 22 20 18 45 45 H 1.08994 * 109.45768 * 49.97808 * 23 22 20 46 46 H 1.09010 * 109.44974 * 169.93483 * 23 22 20 47 47 H 1.09000 * 109.69091 * 169.54218 * 24 23 22 48 48 H 1.08997 * 109.69325 * 290.07702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0673 -4.8177 0.1082 12 1 0.2611 -4.6773 -0.6118 13 6 1.7897 -6.1375 -0.1803 14 6 0.8293 -7.3039 0.0634 15 6 0.3876 -7.3055 1.5287 16 6 -0.3506 -5.9989 1.8367 17 7 0.5110 -4.8672 1.4672 18 6 0.7885 -3.8952 2.3586 19 8 1.4305 -2.9246 2.0171 20 6 0.3011 -4.0143 3.7796 21 1 0.3215 -5.0595 4.0884 22 6 1.1993 -3.1839 4.7058 23 6 0.5581 -3.0906 6.0929 24 6 -0.6909 -2.2023 6.0232 25 6 -1.5450 -2.6750 4.8765 26 7 -2.8232 -2.4168 4.6197 27 7 -3.1568 -3.0270 3.5330 28 7 -2.1487 -3.6796 3.0591 29 1 -2.1459 -4.2173 2.2518 30 6 -1.1034 -3.4821 3.8805 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0016 33 1 2.6265 -3.7482 -0.9240 34 1 2.7405 -3.6823 0.8511 35 1 2.1221 -6.1509 -1.2183 36 1 2.6519 -6.2322 0.4795 37 1 -0.0444 -7.1953 -0.5791 38 1 1.3333 -8.2431 -0.1649 39 1 -0.2779 -8.1501 1.7072 40 1 1.2630 -7.3897 2.1726 41 1 -1.2741 -5.9562 1.2592 42 1 -0.5825 -5.9524 2.9007 43 1 2.1757 -3.6614 4.7885 44 1 1.3189 -2.1821 4.2930 45 1 0.2760 -4.0878 6.4303 46 1 1.2718 -2.6583 6.7944 47 1 -1.2506 -2.2818 6.9552 48 1 -0.3959 -1.1659 5.8594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326736185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:41 Heat of formation + Delta-G solvation = 77.014907 kcal Electronic energy + Delta-G solvation = -31406.823496 eV Core-core repulsion = 27499.146703 eV Total energy + Delta-G solvation = -3907.676793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.56736 -41.55322 -38.68989 -37.54816 -36.38108 -35.05593 -33.68347 -33.63219 -31.56899 -31.28381 -31.12883 -27.71892 -26.17199 -25.40386 -24.51703 -24.25599 -23.71652 -22.68261 -21.68897 -20.58258 -20.11584 -19.35668 -18.84748 -17.94159 -17.12389 -16.92265 -16.71734 -16.38650 -15.73761 -15.50349 -15.29044 -15.14478 -14.99686 -14.97233 -14.67707 -14.51915 -14.44350 -13.84691 -13.75495 -13.55763 -13.22181 -13.06537 -12.87168 -12.73810 -12.63657 -12.42941 -12.16439 -12.12489 -12.09389 -11.95496 -11.85796 -11.72216 -11.58792 -11.49036 -11.37245 -11.30149 -10.86519 -10.23038 -9.72017 -9.45532 -8.61833 -7.85682 -5.02751 0.44487 1.39211 1.40091 1.41699 1.50545 1.67339 1.87680 2.04841 2.59489 3.19515 3.47252 3.49963 3.55391 3.70442 3.78423 3.84160 3.96343 3.99930 4.08281 4.16357 4.29806 4.31368 4.32525 4.39975 4.45210 4.49555 4.55604 4.61309 4.68739 4.87523 4.95994 4.97081 4.99821 5.04492 5.11690 5.12977 5.14601 5.18015 5.24929 5.30302 5.31282 5.47108 5.50207 5.53181 5.78503 5.79221 6.34133 6.56853 7.33664 7.41257 7.52384 8.21776 8.43030 9.38871 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.006533 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.876722 B = 4284.922305 C = 6371.321078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.088 4.088 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.296 1.296 6 H -0.304 1.304 7 C -0.189 4.189 8 H 0.061 0.939 9 N -0.699 5.699 10 C 0.163 3.837 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.088 3.912 17 N -0.612 5.612 18 C 0.466 3.534 19 O -0.479 6.479 20 C -0.020 4.020 21 H 0.147 0.853 22 C -0.102 4.102 23 C -0.103 4.103 24 C -0.038 4.038 25 C -0.024 4.024 26 N -0.290 5.290 27 N -0.114 5.114 28 N -0.367 5.367 29 H 0.452 0.548 30 C 0.006 3.994 31 H 0.239 0.761 32 H 0.363 0.637 33 H 0.010 0.990 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -22.064 10.255 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.278 4.278 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.224 1.224 6 H -0.232 1.232 7 C -0.322 4.322 8 H 0.079 0.921 9 N -0.339 5.339 10 C 0.037 3.963 11 C 0.044 3.956 12 H 0.075 0.925 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C -0.034 4.034 17 N -0.350 5.350 18 C 0.250 3.750 19 O -0.349 6.349 20 C -0.043 4.043 21 H 0.164 0.836 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.077 4.077 25 C -0.164 4.164 26 N -0.155 5.155 27 N -0.093 5.093 28 N -0.087 5.087 29 H 0.299 0.701 30 C -0.131 4.131 31 H 0.048 0.952 32 H 0.195 0.805 33 H 0.028 0.972 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.544 -20.964 9.958 23.216 hybrid contribution 0.727 1.131 -0.965 1.656 sum 1.271 -19.833 8.993 21.814 Atomic orbital electron populations 1.69811 1.06331 1.24585 1.62217 1.25270 0.96162 1.00221 1.06153 0.85236 0.78303 0.81207 0.76221 1.19256 1.22428 1.23193 1.19390 0.90587 0.85554 1.36672 0.92065 1.42244 1.04407 1.00638 1.86605 1.20908 0.94146 0.84735 0.96531 1.21341 0.95457 0.95735 0.83082 0.92510 1.21845 0.98742 0.92686 1.02394 1.21502 0.99071 0.97811 0.96792 1.21865 1.01274 0.96166 0.96909 1.22121 0.93373 0.86179 1.01678 1.48103 1.51044 1.24017 1.11815 1.20925 0.83511 0.82986 0.87533 1.91282 1.37348 1.29566 1.76671 1.20172 0.86907 1.03364 0.93876 0.83611 1.21525 0.98360 0.99620 0.94571 1.21622 0.95515 1.01192 0.95701 1.20182 0.94237 0.99767 0.93503 1.22296 0.92068 1.00892 1.01185 1.74729 1.14157 1.18334 1.08299 1.78446 1.12993 1.09840 1.07992 1.44734 1.07615 1.34803 1.21588 0.70057 1.21734 0.92463 1.05090 0.93801 0.95238 0.80549 0.97195 0.95468 0.90436 0.91500 0.91647 0.89723 0.88159 0.90914 0.91018 0.88705 0.88642 0.93805 0.88797 0.87977 0.87770 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.66 13.06 21.65 0.28 -64.38 16 2 C -0.09 -5.45 5.50 84.86 0.47 -4.99 16 3 Si 0.96 50.65 29.55 68.60 2.03 52.68 16 4 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 6 H -0.30 -16.32 7.11 99.48 0.71 -15.61 16 7 C -0.19 -11.28 9.19 84.04 0.77 -10.50 16 8 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 9 N -0.70 -36.95 3.23 -343.45 -1.11 -38.05 16 10 C 0.16 6.68 4.89 86.38 0.42 7.10 16 11 C 0.15 4.32 2.90 44.97 0.13 4.45 16 12 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.12 -2.37 5.35 30.67 0.16 -2.21 16 14 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 15 C -0.12 -1.35 6.08 30.67 0.19 -1.16 16 16 C 0.09 1.36 4.95 86.36 0.43 1.79 16 17 N -0.61 -15.74 2.98 -794.94 -2.37 -18.11 16 18 C 0.47 15.14 6.48 87.66 0.57 15.71 16 19 O -0.48 -21.69 9.26 -3.03 -0.03 -21.72 16 20 C -0.02 -0.49 2.03 -12.19 -0.02 -0.51 16 21 H 0.15 2.26 6.48 -2.38 -0.02 2.24 16 22 C -0.10 -2.50 4.95 30.77 0.15 -2.35 16 23 C -0.10 -1.80 5.90 30.77 0.18 -1.62 16 24 C -0.04 -0.91 6.30 29.96 0.19 -0.72 16 25 C -0.02 -0.76 7.11 41.75 0.30 -0.46 16 26 N -0.29 -10.85 12.40 -48.99 -0.61 -11.46 16 27 N -0.11 -4.17 13.40 37.02 0.50 -3.67 16 28 N -0.37 -11.17 6.86 -48.27 -0.33 -11.51 16 29 H 0.45 11.48 7.18 -219.68 -1.58 9.90 16 30 C 0.01 0.18 6.10 41.50 0.25 0.43 16 31 H 0.24 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.36 20.88 7.56 -92.71 -0.70 20.18 16 33 H 0.01 0.43 8.10 -2.38 -0.02 0.41 16 34 H 0.03 1.20 6.43 -2.39 -0.02 1.19 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.00 7.70 -2.38 -0.02 0.98 16 42 H 0.09 1.17 5.34 -2.39 -0.01 1.15 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.04 1.52 7.46 -2.39 -0.02 1.50 16 45 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 46 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -84.98 365.75 1.44 -83.54 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -1.28 Total: 29.06 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.37 Total: 3.63 kcal Atomic # 7 Polarization: -143.55 SS G_CDS: -3.64 Total: -147.19 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.03 Total: -21.72 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.03 Total: 52.68 kcal Total: -84.98 1.44 -83.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326736185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.551 kcal (2) G-P(sol) polarization free energy of solvation -84.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds