Wall clock time and date at job start Tue Mar 31 2020 18:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00266 * 2 1 4 4 H 1.48500 * 109.47019 * 269.99878 * 3 2 1 5 5 H 1.48503 * 109.46775 * 29.99219 * 3 2 1 6 6 H 1.48494 * 109.47436 * 149.99466 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00078 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99694 * 179.72563 * 7 2 1 10 10 C 1.46505 * 119.99731 * 180.27525 * 9 7 2 11 11 C 1.52996 * 109.47139 * 174.81785 * 10 9 7 12 12 H 1.09000 * 109.58852 * 308.38333 * 11 10 9 13 13 C 1.53192 * 109.58886 * 188.09594 * 11 10 9 14 14 C 1.53038 * 109.31304 * 185.58086 * 13 11 10 15 15 C 1.53039 * 109.54188 * 61.36572 * 14 13 11 16 16 C 1.53192 * 109.31010 * 298.63438 * 15 14 13 17 17 N 1.46923 * 109.58485 * 68.66042 * 11 10 9 18 18 C 1.34775 * 120.63302 * 353.39970 * 17 11 10 19 19 O 1.21591 * 119.99917 * 6.93162 * 18 17 11 20 20 C 1.47526 * 120.00189 * 186.93602 * 18 17 11 21 21 C 1.36594 * 125.77122 * 187.08594 * 20 18 17 22 22 N 1.34818 * 106.84231 * 179.97438 * 21 20 18 23 23 C 1.46490 * 126.59469 * 179.97438 * 22 21 20 24 24 C 1.53781 * 113.61776 * 12.49639 * 23 22 21 25 25 C 1.53785 * 87.07942 * 220.01729 * 24 23 22 26 26 C 1.53784 * 113.61392 * 274.99362 * 23 22 21 27 27 N 1.40210 * 106.80762 * 359.97438 * 22 21 20 28 28 N 1.28761 * 108.36867 * 359.75076 * 27 22 21 29 29 H 0.96995 * 119.99870 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00652 * 0.28123 * 9 7 2 31 31 H 1.08999 * 109.46949 * 294.82113 * 10 9 7 32 32 H 1.09004 * 109.47076 * 54.81905 * 10 9 7 33 33 H 1.09008 * 109.49339 * 305.53212 * 13 11 10 34 34 H 1.09001 * 109.49837 * 65.59150 * 13 11 10 35 35 H 1.09003 * 109.45915 * 181.38576 * 14 13 11 36 36 H 1.08998 * 109.46010 * 301.35052 * 14 13 11 37 37 H 1.08996 * 109.49899 * 58.58205 * 15 14 13 38 38 H 1.08995 * 109.50240 * 178.68465 * 15 14 13 39 39 H 1.08997 * 109.59228 * 174.42158 * 16 15 14 40 40 H 1.09003 * 109.58501 * 294.70846 * 16 15 14 41 41 H 1.08001 * 126.57742 * 359.96636 * 21 20 18 42 42 H 1.09008 * 112.84885 * 143.80030 * 23 22 21 43 43 H 1.09002 * 113.60941 * 334.56343 * 24 23 22 44 44 H 1.08995 * 113.61747 * 105.47420 * 24 23 22 45 45 H 1.08994 * 113.61403 * 270.87991 * 25 24 23 46 46 H 1.09002 * 113.61420 * 139.97341 * 25 24 23 47 47 H 1.08996 * 113.61524 * 254.52660 * 26 23 22 48 48 H 1.08999 * 113.61355 * 25.35512 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 -0.0051 10 6 4.1122 -2.4709 -0.0107 11 6 5.6107 -2.1940 -0.1466 12 1 5.7850 -1.5361 -0.9981 13 6 6.3600 -3.5137 -0.3555 14 6 7.8668 -3.2464 -0.3513 15 6 8.2799 -2.6656 1.0029 16 6 7.5525 -1.3362 1.2272 17 7 6.1065 -1.5542 1.0795 18 6 5.2522 -1.1781 2.0517 19 8 4.0764 -1.4788 1.9775 20 6 5.7435 -0.4015 3.2057 21 6 5.0184 -0.0773 4.3170 22 7 5.8344 0.6314 5.1228 23 6 5.4950 1.1955 6.4315 24 6 4.1694 0.6674 7.0050 25 6 3.8974 2.1021 7.4873 26 6 4.8200 2.5749 6.3514 27 7 7.0704 0.7248 4.4675 28 7 6.9824 0.1008 3.3446 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 -0.0054 31 1 3.9241 -3.0030 0.9218 32 1 3.7775 -3.0799 -0.8505 33 1 6.1108 -4.2049 0.4499 34 1 6.0698 -3.9495 -1.3115 35 1 8.4018 -4.1802 -0.5243 36 1 8.1118 -2.5361 -1.1409 37 1 8.0128 -3.3646 1.7954 38 1 9.3568 -2.4972 1.0135 39 1 7.7659 -0.9674 2.2304 40 1 7.8890 -0.6067 0.4904 41 1 3.9888 -0.3385 4.5124 42 1 6.3244 1.1556 7.1376 43 1 3.4704 0.3230 6.2428 44 1 4.2992 -0.0487 7.8164 45 1 4.2890 2.3096 8.4830 46 1 2.8601 2.4143 7.3657 47 1 5.4749 3.3987 6.6353 48 1 4.3000 2.7526 5.4100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328620825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:06 Heat of formation + Delta-G solvation = 150.645771 kcal Electronic energy + Delta-G solvation = -30333.348472 eV Core-core repulsion = 26428.864553 eV Total energy + Delta-G solvation = -3904.483919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23775 -39.97395 -39.04910 -36.88743 -34.61906 -33.35870 -32.36149 -31.94466 -30.51952 -30.14537 -26.59421 -26.24179 -26.16247 -24.45235 -23.28600 -22.54186 -22.12774 -21.22180 -20.41445 -19.87152 -19.32892 -17.83103 -17.13944 -16.32126 -16.06613 -15.63700 -15.61563 -14.90586 -14.72588 -14.33465 -14.13863 -14.12349 -13.80865 -13.63135 -13.29473 -13.07071 -12.93581 -12.82407 -12.54816 -12.34597 -12.25678 -12.20425 -11.94108 -11.72942 -11.41721 -11.23602 -11.05279 -10.93648 -10.92305 -10.76890 -10.71948 -10.27043 -10.20213 -9.99322 -9.83358 -9.39095 -9.13417 -8.76643 -8.50296 -8.08862 -6.78808 -5.55902 -2.81357 1.22770 1.95416 2.01834 3.34270 3.47784 3.54003 3.54195 3.73536 3.78898 3.95576 4.24093 4.27718 4.35789 4.68262 4.77893 4.90156 4.95373 4.97458 5.03934 5.11194 5.16914 5.23521 5.25279 5.30451 5.39782 5.46796 5.51349 5.54370 5.55892 5.69134 5.76994 5.80022 5.87198 5.89854 5.96374 6.08087 6.11504 6.17366 6.23944 6.37724 6.45683 6.48891 6.69784 6.94476 7.28177 7.86671 8.07690 8.20888 8.62611 8.80988 9.44134 10.17807 10.39151 11.64052 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.005622 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.107718 B = 4979.063457 C = 7556.812731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.004 4.004 3 Si 0.879 3.121 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.204 4.204 8 H 0.087 0.913 9 N -0.724 5.724 10 C 0.163 3.837 11 C 0.138 3.862 12 H 0.069 0.931 13 C -0.125 4.125 14 C -0.118 4.118 15 C -0.132 4.132 16 C 0.088 3.912 17 N -0.603 5.603 18 C 0.559 3.441 19 O -0.448 6.448 20 C -0.083 4.083 21 C 0.087 3.913 22 N -0.351 5.351 23 C 0.123 3.877 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.146 4.146 27 N -0.080 5.080 28 N -0.213 5.213 29 H 0.254 0.746 30 H 0.356 0.644 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.058 0.942 41 H 0.202 0.798 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.752 -0.854 13.505 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.335 4.335 8 H 0.105 0.895 9 N -0.368 5.368 10 C 0.036 3.964 11 C 0.035 3.965 12 H 0.087 0.913 13 C -0.164 4.164 14 C -0.156 4.156 15 C -0.170 4.170 16 C -0.036 4.036 17 N -0.339 5.339 18 C 0.342 3.658 19 O -0.315 6.315 20 C -0.222 4.222 21 C -0.069 4.069 22 N -0.137 5.137 23 C 0.021 3.979 24 C -0.186 4.186 25 C -0.174 4.174 26 C -0.185 4.185 27 N -0.058 5.058 28 N -0.086 5.086 29 H 0.064 0.936 30 H 0.188 0.812 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.076 0.924 41 H 0.218 0.782 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.264 -0.548 13.586 21.975 hybrid contribution -0.264 1.113 0.049 1.145 sum 17.000 0.565 13.635 21.800 Atomic orbital electron populations 1.69696 1.04900 1.25113 1.59798 1.24528 0.95066 0.96610 1.03597 0.86594 0.79188 0.85657 0.77464 1.21633 1.22251 1.20755 1.19026 0.80810 0.94340 1.39329 0.89494 1.42658 1.03803 1.01814 1.88530 1.20911 0.86290 0.90197 0.98962 1.21573 0.95827 0.93154 0.85926 0.91336 1.21883 0.94797 0.97276 1.02465 1.21518 0.96020 1.00650 0.97429 1.21906 0.99701 0.97709 0.97714 1.22367 0.79481 0.96175 1.05607 1.47622 1.06664 1.61524 1.18111 1.16954 0.85779 0.81463 0.81622 1.91232 1.14622 1.52052 1.73625 1.21850 0.91058 1.09843 0.99463 1.23267 0.98925 0.94287 0.90405 1.50445 1.10105 1.37135 1.15989 1.23385 0.98527 0.95652 0.80326 1.23478 0.94837 0.98561 1.01709 1.22710 1.01208 0.95035 0.98409 1.23452 0.98697 0.95732 1.00631 1.81884 1.00970 1.20522 1.02416 1.74325 1.17414 1.06896 1.10001 0.93583 0.81173 0.93185 0.95724 0.91423 0.90765 0.92125 0.91968 0.91949 0.91313 0.85803 0.92391 0.78151 0.85078 0.88234 0.89389 0.89123 0.89642 0.89781 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.98 13.97 55.49 0.78 -30.21 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.88 23.89 27.73 -169.99 -4.71 19.17 16 4 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 5 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 6 H -0.28 -7.49 6.52 56.52 0.37 -7.12 16 7 C -0.20 -6.12 10.20 -15.06 -0.15 -6.27 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.72 -18.56 3.03 -59.91 -0.18 -18.74 16 10 C 0.16 3.45 4.87 -4.04 -0.02 3.43 16 11 C 0.14 2.34 2.93 -67.60 -0.20 2.14 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.13 -1.65 5.37 -26.61 -0.14 -1.79 16 14 C -0.12 -1.31 5.88 -26.69 -0.16 -1.46 16 15 C -0.13 -1.50 6.08 -26.61 -0.16 -1.67 16 16 C 0.09 1.23 6.09 -3.69 -0.02 1.20 16 17 N -0.60 -10.27 2.98 -166.41 -0.50 -10.77 16 18 C 0.56 10.84 7.01 -12.47 -0.09 10.75 16 19 O -0.45 -10.27 10.68 5.29 0.06 -10.21 16 20 C -0.08 -1.42 6.70 -83.55 -0.56 -1.98 16 21 C 0.09 1.28 10.49 -16.83 -0.18 1.10 16 22 N -0.35 -4.45 3.83 -53.77 -0.21 -4.66 16 23 C 0.12 1.04 5.06 -67.12 -0.34 0.70 16 24 C -0.15 -1.02 7.44 -25.92 -0.19 -1.22 16 25 C -0.14 -0.81 8.08 -25.91 -0.21 -1.02 16 26 C -0.15 -1.17 7.88 -25.92 -0.20 -1.37 16 27 N -0.08 -1.19 13.78 60.35 0.83 -0.36 16 28 N -0.21 -3.46 8.78 32.85 0.29 -3.17 16 29 H 0.25 7.97 8.31 -40.82 -0.34 7.64 16 30 H 0.36 9.25 4.87 -40.82 -0.20 9.05 16 31 H 0.05 1.14 6.33 -51.93 -0.33 0.81 16 32 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.12 1.82 4.11 -79.82 -0.33 1.49 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.20 2.66 6.78 -52.49 -0.36 2.30 16 42 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.10 0.80 6.39 -51.93 -0.33 0.47 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -36.44 372.05 -8.23 -44.68 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.47 Total: 6.34 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.72 Total: 2.31 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: 1.01 Total: -67.90 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.06 Total: -10.21 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.71 Total: 19.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.44 -8.23 -44.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328620825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.322 kcal (2) G-P(sol) polarization free energy of solvation -36.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds