Wall clock time and date at job start Tue Mar 31 2020 18:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00266 * 2 1 4 4 H 1.48500 * 109.47019 * 269.99878 * 3 2 1 5 5 H 1.48503 * 109.46775 * 29.99219 * 3 2 1 6 6 H 1.48494 * 109.47436 * 149.99466 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00078 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99694 * 179.72563 * 7 2 1 10 10 C 1.46505 * 119.99731 * 180.27525 * 9 7 2 11 11 C 1.52996 * 109.47139 * 174.81785 * 10 9 7 12 12 H 1.09000 * 109.58852 * 308.38333 * 11 10 9 13 13 C 1.53192 * 109.58886 * 188.09594 * 11 10 9 14 14 C 1.53038 * 109.31304 * 185.58086 * 13 11 10 15 15 C 1.53039 * 109.54188 * 61.36572 * 14 13 11 16 16 C 1.53192 * 109.31010 * 298.63438 * 15 14 13 17 17 N 1.46923 * 109.58485 * 68.66042 * 11 10 9 18 18 C 1.34775 * 120.63302 * 353.39970 * 17 11 10 19 19 O 1.21591 * 119.99917 * 6.93162 * 18 17 11 20 20 C 1.47526 * 120.00189 * 186.93602 * 18 17 11 21 21 C 1.36594 * 125.77122 * 187.08594 * 20 18 17 22 22 N 1.34818 * 106.84231 * 179.97438 * 21 20 18 23 23 C 1.46490 * 126.59469 * 179.97438 * 22 21 20 24 24 C 1.53781 * 113.61776 * 12.49639 * 23 22 21 25 25 C 1.53785 * 87.07942 * 220.01729 * 24 23 22 26 26 C 1.53784 * 113.61392 * 274.99362 * 23 22 21 27 27 N 1.40210 * 106.80762 * 359.97438 * 22 21 20 28 28 N 1.28761 * 108.36867 * 359.75076 * 27 22 21 29 29 H 0.96995 * 119.99870 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00652 * 0.28123 * 9 7 2 31 31 H 1.08999 * 109.46949 * 294.82113 * 10 9 7 32 32 H 1.09004 * 109.47076 * 54.81905 * 10 9 7 33 33 H 1.09008 * 109.49339 * 305.53212 * 13 11 10 34 34 H 1.09001 * 109.49837 * 65.59150 * 13 11 10 35 35 H 1.09003 * 109.45915 * 181.38576 * 14 13 11 36 36 H 1.08998 * 109.46010 * 301.35052 * 14 13 11 37 37 H 1.08996 * 109.49899 * 58.58205 * 15 14 13 38 38 H 1.08995 * 109.50240 * 178.68465 * 15 14 13 39 39 H 1.08997 * 109.59228 * 174.42158 * 16 15 14 40 40 H 1.09003 * 109.58501 * 294.70846 * 16 15 14 41 41 H 1.08001 * 126.57742 * 359.96636 * 21 20 18 42 42 H 1.09008 * 112.84885 * 143.80030 * 23 22 21 43 43 H 1.09002 * 113.60941 * 334.56343 * 24 23 22 44 44 H 1.08995 * 113.61747 * 105.47420 * 24 23 22 45 45 H 1.08994 * 113.61403 * 270.87991 * 25 24 23 46 46 H 1.09002 * 113.61420 * 139.97341 * 25 24 23 47 47 H 1.08996 * 113.61524 * 254.52660 * 26 23 22 48 48 H 1.08999 * 113.61355 * 25.35512 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 -0.0051 10 6 4.1122 -2.4709 -0.0107 11 6 5.6107 -2.1940 -0.1466 12 1 5.7850 -1.5361 -0.9981 13 6 6.3600 -3.5137 -0.3555 14 6 7.8668 -3.2464 -0.3513 15 6 8.2799 -2.6656 1.0029 16 6 7.5525 -1.3362 1.2272 17 7 6.1065 -1.5542 1.0795 18 6 5.2522 -1.1781 2.0517 19 8 4.0764 -1.4788 1.9775 20 6 5.7435 -0.4015 3.2057 21 6 5.0184 -0.0773 4.3170 22 7 5.8344 0.6314 5.1228 23 6 5.4950 1.1955 6.4315 24 6 4.1694 0.6674 7.0050 25 6 3.8974 2.1021 7.4873 26 6 4.8200 2.5749 6.3514 27 7 7.0704 0.7248 4.4675 28 7 6.9824 0.1008 3.3446 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 -0.0054 31 1 3.9241 -3.0030 0.9218 32 1 3.7775 -3.0799 -0.8505 33 1 6.1108 -4.2049 0.4499 34 1 6.0698 -3.9495 -1.3115 35 1 8.4018 -4.1802 -0.5243 36 1 8.1118 -2.5361 -1.1409 37 1 8.0128 -3.3646 1.7954 38 1 9.3568 -2.4972 1.0135 39 1 7.7659 -0.9674 2.2304 40 1 7.8890 -0.6067 0.4904 41 1 3.9888 -0.3385 4.5124 42 1 6.3244 1.1556 7.1376 43 1 3.4704 0.3230 6.2428 44 1 4.2992 -0.0487 7.8164 45 1 4.2890 2.3096 8.4830 46 1 2.8601 2.4143 7.3657 47 1 5.4749 3.3987 6.6353 48 1 4.3000 2.7526 5.4100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328620825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:05 Heat of formation + Delta-G solvation = 126.325827 kcal Electronic energy + Delta-G solvation = -30334.403064 eV Core-core repulsion = 26428.864553 eV Total energy + Delta-G solvation = -3905.538511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38822 -41.32561 -39.78211 -38.20416 -36.51282 -34.52422 -33.79028 -33.54159 -32.03075 -31.62983 -27.96763 -27.17668 -26.87727 -25.93216 -24.43491 -24.06876 -23.38767 -22.68574 -21.60614 -20.71231 -20.46068 -19.64671 -18.52659 -17.39425 -17.22302 -16.95962 -16.64388 -16.42798 -15.98772 -15.84433 -15.67293 -15.45943 -15.12876 -14.88060 -14.57913 -14.23241 -14.12845 -13.83502 -13.78974 -13.72629 -13.54917 -13.38997 -13.25781 -13.07058 -12.90559 -12.59927 -12.27952 -12.20170 -11.97525 -11.88702 -11.81240 -11.71205 -11.56861 -11.40476 -11.20047 -10.99479 -10.94102 -10.34125 -10.12471 -9.53605 -8.90001 -7.94769 -5.16996 0.08470 0.65124 1.02611 1.29191 1.31161 1.39090 2.03985 2.35997 2.49868 3.00970 3.16357 3.33822 3.37072 3.54051 3.65752 3.69052 3.70570 3.86176 3.92399 4.05669 4.11827 4.13700 4.27836 4.32613 4.37377 4.44847 4.54988 4.59740 4.63582 4.68873 4.84896 4.86489 4.89020 4.95388 4.99868 5.04750 5.10509 5.16528 5.20329 5.24323 5.29386 5.36110 5.49807 5.52980 5.80909 5.86206 6.28420 6.49961 6.85794 7.16379 7.36763 7.95499 8.14153 9.28787 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.005622 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.107718 B = 4979.063457 C = 7556.812731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.991 5.991 2 C -0.068 4.068 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.189 4.189 8 H 0.053 0.947 9 N -0.725 5.725 10 C 0.164 3.836 11 C 0.141 3.859 12 H 0.071 0.929 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.083 3.917 17 N -0.601 5.601 18 C 0.559 3.441 19 O -0.500 6.500 20 C -0.111 4.111 21 C 0.090 3.910 22 N -0.334 5.334 23 C 0.109 3.891 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.150 4.150 27 N -0.086 5.086 28 N -0.217 5.217 29 H 0.253 0.747 30 H 0.355 0.645 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.209 0.791 42 H 0.158 0.842 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.940 -0.323 14.671 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.644 5.644 2 C -0.258 4.258 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.321 4.321 8 H 0.071 0.929 9 N -0.368 5.368 10 C 0.038 3.962 11 C 0.038 3.962 12 H 0.089 0.911 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.164 4.164 16 C -0.040 4.040 17 N -0.336 5.336 18 C 0.343 3.657 19 O -0.372 6.372 20 C -0.250 4.250 21 C -0.067 4.067 22 N -0.120 5.120 23 C 0.010 3.990 24 C -0.185 4.185 25 C -0.160 4.160 26 C -0.189 4.189 27 N -0.064 5.064 28 N -0.090 5.090 29 H 0.062 0.938 30 H 0.187 0.813 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.226 0.774 42 H 0.175 0.825 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.135 0.865 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.549 -0.030 14.759 25.300 hybrid contribution -1.197 0.887 -0.178 1.500 sum 19.352 0.857 14.581 24.246 Atomic orbital electron populations 1.69862 1.06594 1.25821 1.62167 1.25193 0.95882 1.00061 1.04696 0.85473 0.77800 0.81168 0.77627 1.20766 1.22246 1.20270 1.18978 0.82787 0.92992 1.37306 0.92895 1.42604 1.02227 1.03360 1.88615 1.20958 0.89061 0.88249 0.97901 1.21541 0.93263 0.95424 0.85942 0.91141 1.21855 0.96140 0.94683 1.03030 1.21509 0.94082 1.02105 0.97306 1.21881 1.00837 0.95805 0.97834 1.22567 0.77651 0.98137 1.05609 1.47816 1.07907 1.60427 1.17440 1.17337 0.85485 0.80703 0.82141 1.91209 1.16482 1.54265 1.75271 1.21703 0.92132 1.11389 0.99796 1.23402 0.99286 0.93866 0.90118 1.50757 1.08856 1.35712 1.16660 1.24026 1.00147 0.96026 0.78811 1.23509 0.93409 0.99815 1.01779 1.22726 1.00787 0.93619 0.98850 1.23457 0.99229 0.95833 1.00359 1.81790 1.02023 1.20339 1.02285 1.74319 1.16962 1.07113 1.10580 0.93833 0.81306 0.94889 0.95583 0.91958 0.89320 0.89613 0.91180 0.92482 0.88655 0.86270 0.91765 0.77396 0.82504 0.89801 0.87380 0.86463 0.89862 0.88430 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -67.18 13.97 21.65 0.30 -66.88 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 3 Si 0.95 50.78 27.73 68.60 1.90 52.69 16 4 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 5 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.28 -14.40 6.52 99.48 0.65 -13.75 16 7 C -0.19 -11.73 10.20 84.03 0.86 -10.87 16 8 H 0.05 3.58 8.06 -2.91 -0.02 3.56 16 9 N -0.72 -37.99 3.03 -343.44 -1.04 -39.03 16 10 C 0.16 7.08 4.87 86.38 0.42 7.50 16 11 C 0.14 4.67 2.93 44.97 0.13 4.80 16 12 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 13 C -0.12 -2.86 5.37 30.67 0.16 -2.70 16 14 C -0.11 -2.08 5.88 30.62 0.18 -1.90 16 15 C -0.13 -2.48 6.08 30.67 0.19 -2.29 16 16 C 0.08 2.17 6.09 86.35 0.53 2.70 16 17 N -0.60 -20.10 2.98 -798.67 -2.38 -22.48 16 18 C 0.56 21.95 7.01 86.69 0.61 22.56 16 19 O -0.50 -23.76 10.68 -4.00 -0.04 -23.80 16 20 C -0.11 -3.81 6.70 40.82 0.27 -3.53 16 21 C 0.09 2.65 10.49 83.85 0.88 3.53 16 22 N -0.33 -8.10 3.83 -324.04 -1.24 -9.34 16 23 C 0.11 1.63 5.06 45.52 0.23 1.86 16 24 C -0.15 -1.76 7.44 31.12 0.23 -1.53 16 25 C -0.12 -1.16 8.08 31.12 0.25 -0.91 16 26 C -0.15 -2.13 7.88 31.12 0.25 -1.88 16 27 N -0.09 -2.46 13.78 37.02 0.51 -1.95 16 28 N -0.22 -6.86 8.78 -49.99 -0.44 -7.30 16 29 H 0.25 16.35 8.31 -92.71 -0.77 15.57 16 30 H 0.35 18.57 4.87 -92.71 -0.45 18.12 16 31 H 0.03 1.56 6.33 -2.39 -0.02 1.55 16 32 H 0.03 1.12 8.13 -2.38 -0.02 1.10 16 33 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.12 3.33 4.11 -38.47 -0.16 3.17 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.21 5.67 6.78 -2.91 -0.02 5.65 16 42 H 0.16 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.30 6.39 -2.39 -0.02 1.29 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 46 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -82.12 372.05 3.54 -78.57 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.32 Total: 26.06 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.65 Total: 13.46 kcal Atomic # 7 Polarization: -142.69 SS G_CDS: -4.29 Total: -146.98 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 1.90 Total: 52.69 kcal Total: -82.12 3.54 -78.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328620825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.901 kcal (2) G-P(sol) polarization free energy of solvation -82.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds