Wall clock time and date at job start Tue Mar 31 2020 18:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47252 * 300.00626 * 3 2 1 6 6 H 1.48504 * 109.47163 * 60.00371 * 3 2 1 7 7 C 1.38813 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00186 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47576 * 174.98252 * 10 9 7 12 12 H 1.08998 * 109.58393 * 59.67819 * 11 10 9 13 13 C 1.53191 * 109.58451 * 299.25339 * 11 10 9 14 14 C 1.53042 * 109.31119 * 185.57393 * 13 11 10 15 15 C 1.53043 * 109.53579 * 61.36499 * 14 13 11 16 16 C 1.53187 * 109.31222 * 298.63215 * 15 14 13 17 17 N 1.46926 * 109.58755 * 179.97438 * 11 10 9 18 18 C 1.34773 * 120.63398 * 353.37716 * 17 11 10 19 19 O 1.21288 * 119.99865 * 5.43045 * 18 17 11 20 20 C 1.50695 * 120.00131 * 185.42573 * 18 17 11 21 21 N 1.46505 * 109.47278 * 179.97438 * 20 18 17 22 22 C 1.35314 * 125.86661 * 124.71545 * 21 20 18 23 23 C 1.35356 * 106.17242 * 179.90832 * 22 21 20 24 24 C 1.50692 * 126.75047 * 180.12618 * 23 22 21 25 25 C 1.53000 * 117.50162 * 343.86522 * 24 23 22 26 26 C 1.52998 * 60.00139 * 252.50878 * 25 24 23 27 27 N 1.33773 * 106.49662 * 0.35378 * 23 22 21 28 28 N 1.28632 * 108.88759 * 359.77176 * 27 23 22 29 29 H 0.96995 * 120.00466 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00010 * 359.72688 * 9 7 2 31 31 H 1.08999 * 109.47401 * 294.98652 * 10 9 7 32 32 H 1.09003 * 109.47137 * 54.98298 * 10 9 7 33 33 H 1.09000 * 109.49476 * 305.52351 * 13 11 10 34 34 H 1.08998 * 109.49979 * 65.62459 * 13 11 10 35 35 H 1.09002 * 109.46189 * 301.34945 * 14 13 11 36 36 H 1.09000 * 109.45020 * 181.37624 * 14 13 11 37 37 H 1.09002 * 109.49868 * 178.68513 * 15 14 13 38 38 H 1.08993 * 109.52592 * 58.60319 * 15 14 13 39 39 H 1.09000 * 109.59279 * 294.84517 * 16 15 14 40 40 H 1.09007 * 109.58722 * 174.42261 * 16 15 14 41 41 H 1.08993 * 109.47403 * 299.99906 * 20 18 17 42 42 H 1.09000 * 109.46784 * 60.00530 * 20 18 17 43 43 H 1.07994 * 126.91527 * 0.02562 * 22 21 20 44 44 H 1.09007 * 115.54934 * 129.57833 * 24 23 22 45 45 H 1.09002 * 117.49422 * 0.02562 * 25 24 23 46 46 H 1.09006 * 117.49716 * 145.01511 * 25 24 23 47 47 H 1.09000 * 117.49851 * 252.50713 * 26 25 24 48 48 H 1.09007 * 117.49706 * 107.48666 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0687 -4.8170 0.1256 12 1 0.3718 -4.7956 -0.7122 13 6 0.2967 -4.6926 1.4429 14 6 -0.5892 -5.9266 1.6289 15 6 0.2868 -7.1796 1.6988 16 6 1.0586 -7.3322 0.3844 17 7 1.8007 -6.0909 0.1253 18 6 3.1276 -6.1203 -0.1091 19 8 3.7462 -5.0835 -0.2245 20 6 3.8427 -7.4415 -0.2275 21 7 5.2662 -7.2054 -0.4811 22 6 6.2935 -7.6884 0.2553 23 6 7.4249 -7.2306 -0.3299 24 6 8.8403 -7.4950 0.1143 25 6 9.0472 -8.0329 1.5316 26 6 9.4214 -6.5869 1.2000 27 7 7.0391 -6.4931 -1.3773 28 7 5.7543 -6.4981 -1.4395 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0038 31 1 2.6157 -3.7545 -0.9320 32 1 2.7504 -3.6766 0.8411 33 1 1.0008 -4.6219 2.2719 34 1 -0.3261 -3.7984 1.4166 35 1 -1.2764 -6.0106 0.7869 36 1 -1.1580 -5.8291 2.5536 37 1 -0.3429 -8.0556 1.8546 38 1 0.9910 -7.0861 2.5255 39 1 0.3591 -7.5170 -0.4309 40 1 1.7570 -8.1652 0.4653 41 1 3.7267 -8.0019 0.7000 42 1 3.4169 -8.0123 -1.0527 43 1 6.2246 -8.3148 1.1323 44 1 9.5186 -7.8482 -0.6625 45 1 8.1593 -8.1960 2.1425 46 1 9.8616 -8.7405 1.6874 47 1 10.4819 -6.3431 1.1378 48 1 8.7797 -5.7983 1.5930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328622278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:11 Heat of formation + Delta-G solvation = 127.330532 kcal Electronic energy + Delta-G solvation = -29156.082087 eV Core-core repulsion = 25250.587143 eV Total energy + Delta-G solvation = -3905.494944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.34303 -40.54053 -37.68198 -37.32628 -35.07881 -34.29150 -32.97699 -32.04320 -30.79781 -29.82175 -28.88836 -26.15363 -24.52771 -24.24427 -23.43575 -22.83489 -22.10094 -21.14812 -21.02428 -20.53581 -19.09864 -17.73578 -17.34674 -16.99810 -16.28553 -15.85077 -15.55380 -15.45464 -14.77260 -14.69521 -14.58517 -14.40945 -14.24210 -13.75321 -13.53031 -13.40872 -13.07135 -12.78769 -12.67216 -12.45007 -12.03133 -11.80640 -11.73434 -11.59551 -11.29021 -11.10669 -11.02809 -10.93158 -10.88417 -10.71277 -10.62018 -10.47991 -10.45877 -10.18224 -9.93070 -9.66715 -9.11655 -8.95843 -8.85152 -8.46282 -6.77087 -5.66435 -2.92866 1.47037 2.03929 2.44846 2.47444 2.86914 3.51514 3.53173 3.57513 3.61405 3.95722 4.11276 4.27432 4.49563 4.54526 4.58546 4.62163 4.69828 4.70719 4.73095 4.85536 4.98845 5.11794 5.16170 5.21856 5.25813 5.35038 5.48108 5.58261 5.64719 5.66094 5.69687 5.72557 5.82767 5.87181 5.90762 5.92700 6.04791 6.11901 6.15549 6.23469 6.38339 6.48953 6.67293 7.06189 7.21150 7.32780 7.86021 8.10236 8.52544 8.54334 9.64421 10.21830 10.56995 11.57146 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.003473 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.407464 B = 8059.401924 C =10400.104545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.019 4.019 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.224 4.224 8 H 0.070 0.930 9 N -0.737 5.737 10 C 0.164 3.836 11 C 0.142 3.858 12 H 0.074 0.926 13 C -0.126 4.126 14 C -0.121 4.121 15 C -0.134 4.134 16 C 0.105 3.895 17 N -0.603 5.603 18 C 0.492 3.508 19 O -0.480 6.480 20 C 0.096 3.904 21 N -0.280 5.280 22 C -0.052 4.052 23 C 0.009 3.991 24 C -0.070 4.070 25 C -0.171 4.171 26 C -0.165 4.165 27 N -0.264 5.264 28 N -0.045 5.045 29 H 0.252 0.748 30 H 0.379 0.621 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.187 0.813 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -26.747 5.454 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.214 4.214 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.355 4.355 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.037 3.963 11 C 0.040 3.960 12 H 0.092 0.908 13 C -0.164 4.164 14 C -0.159 4.159 15 C -0.172 4.172 16 C -0.018 4.018 17 N -0.339 5.339 18 C 0.276 3.724 19 O -0.351 6.351 20 C -0.030 4.030 21 N -0.074 5.074 22 C -0.201 4.201 23 C -0.129 4.129 24 C -0.090 4.090 25 C -0.209 4.209 26 C -0.203 4.203 27 N -0.131 5.131 28 N -0.025 5.025 29 H 0.062 0.938 30 H 0.212 0.788 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.204 0.796 44 H 0.139 0.861 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.004 -25.191 4.136 26.472 hybrid contribution -0.037 0.141 1.069 1.079 sum 6.968 -25.050 5.206 26.517 Atomic orbital electron populations 1.69662 1.05016 1.25287 1.58914 1.24694 0.95535 0.97528 1.03600 0.86121 0.78970 0.84200 0.77063 1.20544 1.21931 1.22013 1.19284 0.91156 0.83970 1.41136 0.91171 1.42548 1.05655 1.00401 1.89659 1.21253 0.91276 0.83410 1.00342 1.21659 0.94340 0.82380 0.97658 0.90783 1.21937 0.98874 0.98351 0.97262 1.21560 0.97832 0.94366 1.02149 1.21917 0.99202 0.99037 0.97072 1.21793 0.96034 0.85725 0.98244 1.48087 1.06575 1.08486 1.70716 1.20160 0.82818 0.90282 0.79128 1.90999 1.65354 1.32055 1.46698 1.22005 0.76557 0.98644 1.05794 1.46774 1.07405 1.33251 1.19946 1.23179 0.86828 1.07653 1.02472 1.20978 0.94770 1.00985 0.96128 1.19973 0.90917 1.05677 0.92464 1.23007 1.03565 0.97472 0.96809 1.23019 1.01838 0.93756 1.01640 1.75108 1.02441 1.17188 1.18373 1.78514 1.03902 1.10800 1.09246 0.93784 0.78791 0.93919 0.94860 0.91703 0.89341 0.91736 0.91667 0.90788 0.91511 0.90742 0.90449 0.85205 0.85583 0.79584 0.86112 0.88681 0.88037 0.88067 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.24 13.06 55.49 0.72 -28.51 16 2 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 3 Si 0.90 23.78 29.55 -169.99 -5.02 18.76 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.22 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.74 -19.73 5.29 -59.91 -0.32 -20.04 16 10 C 0.16 3.70 4.10 -4.05 -0.02 3.68 16 11 C 0.14 2.34 3.04 -67.60 -0.21 2.13 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.13 -1.89 5.12 -26.61 -0.14 -2.02 16 14 C -0.12 -1.27 5.88 -26.69 -0.16 -1.43 16 15 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 16 C 0.11 0.78 6.33 -3.71 -0.02 0.76 16 17 N -0.60 -7.55 2.97 -165.23 -0.49 -8.04 16 18 C 0.49 6.93 7.62 -10.99 -0.08 6.84 16 19 O -0.48 -9.59 11.08 5.55 0.06 -9.53 16 20 C 0.10 0.86 5.35 -5.19 -0.03 0.83 16 21 N -0.28 -3.57 3.20 -62.44 -0.20 -3.77 16 22 C -0.05 -0.55 10.89 -17.04 -0.19 -0.73 16 23 C 0.01 0.11 6.88 -82.78 -0.57 -0.46 16 24 C -0.07 -0.67 6.33 -91.77 -0.58 -1.25 16 25 C -0.17 -1.15 10.02 -26.73 -0.27 -1.42 16 26 C -0.16 -1.45 10.23 -26.73 -0.27 -1.72 16 27 N -0.26 -4.47 12.41 33.29 0.41 -4.06 16 28 N -0.05 -0.77 12.13 60.35 0.73 -0.04 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.26 6.77 -40.82 -0.28 9.98 16 31 H 0.04 1.08 6.44 -51.93 -0.33 0.75 16 32 H 0.03 0.82 7.04 -51.93 -0.37 0.46 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.55 7.19 -51.93 -0.37 1.18 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.31 5.96 -51.93 -0.31 0.00 16 41 H 0.13 0.58 7.39 -51.93 -0.38 0.20 16 42 H 0.13 0.79 8.12 -51.93 -0.42 0.37 16 43 H 0.19 1.12 7.45 -52.49 -0.39 0.73 16 44 H 0.12 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.09 0.56 7.23 -51.93 -0.38 0.19 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -39.17 383.67 -8.68 -47.86 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.43 Total: 5.12 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.94 Total: -3.53 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 0.86 Total: -64.46 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.76 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.17 -8.68 -47.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328622278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.187 kcal (2) G-P(sol) polarization free energy of solvation -39.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds