Wall clock time and date at job start Tue Mar 31 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47252 * 300.00626 * 3 2 1 6 6 H 1.48504 * 109.47163 * 60.00371 * 3 2 1 7 7 C 1.38813 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00186 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47576 * 174.98252 * 10 9 7 12 12 H 1.08998 * 109.58393 * 59.67819 * 11 10 9 13 13 C 1.53191 * 109.58451 * 299.25339 * 11 10 9 14 14 C 1.53042 * 109.31119 * 185.57393 * 13 11 10 15 15 C 1.53043 * 109.53579 * 61.36499 * 14 13 11 16 16 C 1.53187 * 109.31222 * 298.63215 * 15 14 13 17 17 N 1.46926 * 109.58755 * 179.97438 * 11 10 9 18 18 C 1.34773 * 120.63398 * 353.37716 * 17 11 10 19 19 O 1.21288 * 119.99865 * 5.43045 * 18 17 11 20 20 C 1.50695 * 120.00131 * 185.42573 * 18 17 11 21 21 N 1.46505 * 109.47278 * 179.97438 * 20 18 17 22 22 C 1.35314 * 125.86661 * 124.71545 * 21 20 18 23 23 C 1.35356 * 106.17242 * 179.90832 * 22 21 20 24 24 C 1.50692 * 126.75047 * 180.12618 * 23 22 21 25 25 C 1.53000 * 117.50162 * 343.86522 * 24 23 22 26 26 C 1.52998 * 60.00139 * 252.50878 * 25 24 23 27 27 N 1.33773 * 106.49662 * 0.35378 * 23 22 21 28 28 N 1.28632 * 108.88759 * 359.77176 * 27 23 22 29 29 H 0.96995 * 120.00466 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00010 * 359.72688 * 9 7 2 31 31 H 1.08999 * 109.47401 * 294.98652 * 10 9 7 32 32 H 1.09003 * 109.47137 * 54.98298 * 10 9 7 33 33 H 1.09000 * 109.49476 * 305.52351 * 13 11 10 34 34 H 1.08998 * 109.49979 * 65.62459 * 13 11 10 35 35 H 1.09002 * 109.46189 * 301.34945 * 14 13 11 36 36 H 1.09000 * 109.45020 * 181.37624 * 14 13 11 37 37 H 1.09002 * 109.49868 * 178.68513 * 15 14 13 38 38 H 1.08993 * 109.52592 * 58.60319 * 15 14 13 39 39 H 1.09000 * 109.59279 * 294.84517 * 16 15 14 40 40 H 1.09007 * 109.58722 * 174.42261 * 16 15 14 41 41 H 1.08993 * 109.47403 * 299.99906 * 20 18 17 42 42 H 1.09000 * 109.46784 * 60.00530 * 20 18 17 43 43 H 1.07994 * 126.91527 * 0.02562 * 22 21 20 44 44 H 1.09007 * 115.54934 * 129.57833 * 24 23 22 45 45 H 1.09002 * 117.49422 * 0.02562 * 25 24 23 46 46 H 1.09006 * 117.49716 * 145.01511 * 25 24 23 47 47 H 1.09000 * 117.49851 * 252.50713 * 26 25 24 48 48 H 1.09007 * 117.49706 * 107.48666 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0687 -4.8170 0.1256 12 1 0.3718 -4.7956 -0.7122 13 6 0.2967 -4.6926 1.4429 14 6 -0.5892 -5.9266 1.6289 15 6 0.2868 -7.1796 1.6988 16 6 1.0586 -7.3322 0.3844 17 7 1.8007 -6.0909 0.1253 18 6 3.1276 -6.1203 -0.1091 19 8 3.7462 -5.0835 -0.2245 20 6 3.8427 -7.4415 -0.2275 21 7 5.2662 -7.2054 -0.4811 22 6 6.2935 -7.6884 0.2553 23 6 7.4249 -7.2306 -0.3299 24 6 8.8403 -7.4950 0.1143 25 6 9.0472 -8.0329 1.5316 26 6 9.4214 -6.5869 1.2000 27 7 7.0391 -6.4931 -1.3773 28 7 5.7543 -6.4981 -1.4395 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0038 31 1 2.6157 -3.7545 -0.9320 32 1 2.7504 -3.6766 0.8411 33 1 1.0008 -4.6219 2.2719 34 1 -0.3261 -3.7984 1.4166 35 1 -1.2764 -6.0106 0.7869 36 1 -1.1580 -5.8291 2.5536 37 1 -0.3429 -8.0556 1.8546 38 1 0.9910 -7.0861 2.5255 39 1 0.3591 -7.5170 -0.4309 40 1 1.7570 -8.1652 0.4653 41 1 3.7267 -8.0019 0.7000 42 1 3.4169 -8.0123 -1.0527 43 1 6.2246 -8.3148 1.1323 44 1 9.5186 -7.8482 -0.6625 45 1 8.1593 -8.1960 2.1425 46 1 9.8616 -8.7405 1.6874 47 1 10.4819 -6.3431 1.1378 48 1 8.7797 -5.7983 1.5930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328622278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:10 Heat of formation + Delta-G solvation = 98.162169 kcal Electronic energy + Delta-G solvation = -29157.346922 eV Core-core repulsion = 25250.587143 eV Total energy + Delta-G solvation = -3906.759779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.28274 -41.64991 -38.65650 -38.11565 -36.74161 -35.51018 -34.03875 -33.76977 -31.69648 -31.54579 -29.77083 -27.70949 -25.75430 -25.04278 -25.01211 -23.80281 -23.06359 -22.45758 -21.92232 -21.41249 -20.17384 -19.23217 -18.56458 -18.25728 -17.25105 -17.03257 -16.65771 -16.43414 -16.23625 -15.66263 -15.52596 -15.50125 -15.30979 -15.03881 -15.01927 -14.65412 -14.36715 -14.16604 -13.62644 -13.55123 -13.28463 -13.13781 -12.90228 -12.74118 -12.54245 -12.29831 -12.22621 -12.20599 -12.10726 -12.03081 -11.84598 -11.69743 -11.59668 -11.42205 -11.21281 -11.16163 -11.04540 -10.27415 -9.97989 -9.66454 -9.01717 -8.02742 -5.30640 0.57413 1.26642 1.38625 1.40225 1.44744 1.50249 1.51542 1.89642 2.50308 2.87176 3.15290 3.29715 3.36913 3.68284 3.78086 3.83344 3.89634 3.93546 3.97658 3.99833 4.06746 4.09556 4.12877 4.24899 4.26639 4.40030 4.41200 4.60175 4.68917 4.78739 4.80618 4.85004 4.91921 4.97890 5.05018 5.12638 5.16741 5.20121 5.22701 5.26194 5.28757 5.30316 5.39734 5.48631 5.54032 5.62800 6.20495 6.33700 7.06918 7.26806 7.53735 8.00458 8.28616 9.20745 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.003473 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.407464 B = 8059.401924 C =10400.104545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.054 0.946 9 N -0.744 5.744 10 C 0.179 3.821 11 C 0.153 3.847 12 H 0.072 0.928 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.128 4.128 16 C 0.095 3.905 17 N -0.597 5.597 18 C 0.482 3.518 19 O -0.555 6.555 20 C 0.099 3.901 21 N -0.279 5.279 22 C -0.030 4.030 23 C -0.012 4.012 24 C -0.090 4.090 25 C -0.135 4.135 26 C -0.182 4.182 27 N -0.315 5.315 28 N -0.106 5.106 29 H 0.254 0.746 30 H 0.374 0.626 31 H 0.011 0.989 32 H 0.006 0.994 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.192 0.808 42 H 0.163 0.837 43 H 0.241 0.759 44 H 0.122 0.878 45 H 0.111 0.889 46 H 0.126 0.874 47 H 0.111 0.889 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 -30.994 7.365 32.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.377 4.377 8 H 0.072 0.928 9 N -0.389 5.389 10 C 0.053 3.947 11 C 0.049 3.951 12 H 0.090 0.910 13 C -0.156 4.156 14 C -0.154 4.154 15 C -0.166 4.166 16 C -0.025 4.025 17 N -0.331 5.331 18 C 0.269 3.731 19 O -0.431 6.431 20 C -0.024 4.024 21 N -0.073 5.073 22 C -0.181 4.181 23 C -0.150 4.150 24 C -0.110 4.110 25 C -0.173 4.173 26 C -0.220 4.220 27 N -0.181 5.181 28 N -0.084 5.084 29 H 0.063 0.937 30 H 0.207 0.793 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.146 0.854 41 H 0.209 0.791 42 H 0.180 0.820 43 H 0.257 0.743 44 H 0.140 0.860 45 H 0.129 0.871 46 H 0.145 0.855 47 H 0.130 0.870 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.554 -29.500 6.037 30.816 hybrid contribution 0.092 1.435 0.518 1.528 sum 6.647 -28.065 6.555 29.577 Atomic orbital electron populations 1.69790 1.06170 1.26168 1.59307 1.25488 0.96555 1.00678 1.03367 0.85110 0.77667 0.79851 0.77356 1.20404 1.21215 1.20918 1.19461 0.90763 0.85790 1.41720 0.92756 1.42686 1.05517 1.01255 1.89431 1.21037 0.91788 0.84368 0.97458 1.21205 0.92901 0.82533 0.98479 0.91050 1.21802 0.98554 0.99757 0.95535 1.21552 0.97588 0.93410 1.02882 1.21930 0.99117 0.98493 0.97032 1.22325 0.97201 0.84226 0.98748 1.48172 1.06514 1.08622 1.69816 1.21143 0.82944 0.91619 0.77406 1.90986 1.66937 1.35234 1.49963 1.22443 0.74211 0.95549 1.10206 1.47089 1.09050 1.32046 1.19095 1.23985 0.85338 1.06242 1.02495 1.21645 0.97050 1.00688 0.95651 1.20085 0.89594 1.07340 0.93949 1.23168 1.04571 0.95685 0.93827 1.23035 1.01974 0.94815 1.02153 1.75012 1.03050 1.19023 1.20971 1.78431 1.04260 1.13662 1.12066 0.93671 0.79278 0.97143 0.97559 0.93433 0.92939 0.90999 0.90852 0.86886 0.91595 0.89126 0.85385 0.79142 0.82006 0.74263 0.85972 0.87109 0.85539 0.87034 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.62 13.06 21.65 0.28 -61.34 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.97 50.29 29.55 68.60 2.03 52.31 16 4 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 5 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.25 -15.59 9.99 84.03 0.84 -14.75 16 8 H 0.05 3.55 7.83 -2.92 -0.02 3.52 16 9 N -0.74 -42.62 5.29 -343.47 -1.82 -44.44 16 10 C 0.18 8.77 4.10 86.38 0.35 9.13 16 11 C 0.15 5.22 3.04 44.97 0.14 5.35 16 12 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.12 -3.64 5.12 30.67 0.16 -3.48 16 14 C -0.12 -2.18 5.88 30.62 0.18 -2.00 16 15 C -0.13 -1.33 6.08 30.67 0.19 -1.14 16 16 C 0.10 0.94 6.33 86.36 0.55 1.48 16 17 N -0.60 -14.05 2.97 -795.04 -2.36 -16.41 16 18 C 0.48 13.23 7.62 87.66 0.67 13.90 16 19 O -0.55 -23.63 11.08 -3.05 -0.03 -23.66 16 20 C 0.10 1.40 5.35 85.63 0.46 1.85 16 21 N -0.28 -6.65 3.20 -351.47 -1.12 -7.78 16 22 C -0.03 -0.56 10.89 83.49 0.91 0.35 16 23 C -0.01 -0.30 6.88 41.59 0.29 -0.02 16 24 C -0.09 -1.64 6.33 -11.54 -0.07 -1.71 16 25 C -0.14 -1.39 10.02 30.59 0.31 -1.08 16 26 C -0.18 -3.10 10.23 30.59 0.31 -2.78 16 27 N -0.31 -11.24 12.41 -48.60 -0.60 -11.84 16 28 N -0.11 -3.76 12.13 37.02 0.45 -3.31 16 29 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.37 21.63 6.77 -92.70 -0.63 21.00 16 31 H 0.01 0.60 6.44 -2.39 -0.02 0.58 16 32 H 0.01 0.35 7.04 -2.39 -0.02 0.33 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.97 7.19 -2.39 -0.02 1.95 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 40 H 0.13 0.03 5.96 -2.38 -0.01 0.01 16 41 H 0.19 0.30 7.39 -2.39 -0.02 0.29 16 42 H 0.16 1.19 8.12 -2.39 -0.02 1.17 16 43 H 0.24 1.45 7.45 -2.91 -0.02 1.43 16 44 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.11 0.79 7.23 -2.39 -0.02 0.78 16 46 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -98.65 383.67 2.90 -95.75 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.35 Total: 19.41 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.74 Total: 1.31 kcal Atomic # 7 Polarization: -139.95 SS G_CDS: -5.17 Total: -145.12 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.03 Total: -23.66 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.03 Total: 52.31 kcal Total: -98.65 2.90 -95.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328622278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.910 kcal (2) G-P(sol) polarization free energy of solvation -98.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds