Wall clock time and date at job start Tue Mar 31 2020 18:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00543 * 2 1 4 4 H 1.48502 * 109.47212 * 270.00276 * 3 2 1 5 5 H 1.48504 * 109.46709 * 29.99985 * 3 2 1 6 6 H 1.48489 * 109.47268 * 149.99967 * 3 2 1 7 7 C 1.38821 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99207 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00057 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46950 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43582 * 52.45810 * 11 10 9 13 13 C 1.54888 * 110.48579 * 289.76652 * 11 10 9 14 14 C 1.55013 * 102.75817 * 203.36959 * 13 11 10 15 15 C 1.54266 * 104.13278 * 37.95398 * 14 13 11 16 16 H 1.08999 * 110.03021 * 217.06720 * 15 14 13 17 17 N 1.46502 * 110.02992 * 95.68668 * 15 14 13 18 18 C 1.34776 * 120.00144 * 87.09342 * 17 15 14 19 19 O 1.21592 * 119.99729 * 359.97438 * 18 17 15 20 20 C 1.47527 * 120.00039 * 180.02562 * 18 17 15 21 21 C 1.36596 * 125.76990 * 180.02562 * 20 18 17 22 22 N 1.34806 * 106.83749 * 180.26004 * 21 20 18 23 23 C 1.46499 * 126.59580 * 179.75462 * 22 21 20 24 24 C 1.53785 * 113.61372 * 12.49788 * 23 22 21 25 25 C 1.53784 * 87.08177 * 220.02018 * 24 23 22 26 26 C 1.53778 * 87.08070 * 25.42878 * 25 24 23 27 27 N 1.40215 * 106.81264 * 359.62345 * 22 21 20 28 28 N 1.28753 * 108.36452 * 0.38579 * 27 22 21 29 29 C 1.53873 * 106.64367 * 336.37551 * 15 14 13 30 30 H 0.97002 * 119.99579 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99705 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47417 * 59.99467 * 10 9 7 33 33 H 1.09001 * 109.46579 * 299.99716 * 10 9 7 34 34 H 1.09000 * 110.75570 * 321.70399 * 13 11 10 35 35 H 1.09006 * 110.74952 * 84.88185 * 13 11 10 36 36 H 1.08997 * 110.50287 * 279.29811 * 14 13 11 37 37 H 1.09003 * 110.52245 * 156.61551 * 14 13 11 38 38 H 0.96998 * 119.99928 * 267.08593 * 17 15 14 39 39 H 1.08002 * 126.57798 * 359.97438 * 21 20 18 40 40 H 1.09001 * 112.85604 * 143.79808 * 23 22 21 41 41 H 1.09003 * 113.60815 * 334.56214 * 24 23 22 42 42 H 1.08991 * 113.61623 * 105.46771 * 24 23 22 43 43 H 1.08997 * 113.61128 * 270.88170 * 25 24 23 44 44 H 1.08997 * 113.69017 * 139.99044 * 25 24 23 45 45 H 1.08998 * 113.61584 * 220.01936 * 26 25 24 46 46 H 1.09000 * 113.69222 * 89.13388 * 26 25 24 47 47 H 1.08999 * 110.03468 * 119.30745 * 29 15 14 48 48 H 1.08995 * 110.03085 * 240.74205 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0635 -4.8197 -0.0012 12 1 0.3435 -4.7043 -0.8113 13 6 0.3378 -4.9131 1.3640 14 6 -0.1137 -6.3953 1.4110 15 6 1.0588 -7.1667 0.7706 16 1 0.6785 -7.9939 0.1713 17 7 1.9552 -7.6731 1.8129 18 6 1.7134 -8.8680 2.3875 19 8 0.7510 -9.5255 2.0410 20 6 2.6156 -9.3777 3.4375 21 6 2.4833 -10.5673 4.0956 22 7 3.5048 -10.6446 4.9718 23 6 3.7751 -11.7423 5.9037 24 6 2.9498 -13.0085 5.6199 25 6 2.7909 -13.1512 7.1428 26 6 3.0019 -11.6303 7.2283 27 7 4.2608 -9.4738 4.8177 28 7 3.7066 -8.7499 3.9085 29 6 1.8069 -6.1656 -0.1272 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0002 32 1 2.6846 -3.7147 0.8894 33 1 2.6845 -3.7146 -0.8906 34 1 1.0234 -4.6918 2.1819 35 1 -0.5220 -4.2436 1.3908 36 1 -1.0251 -6.5354 0.8299 37 1 -0.2640 -6.7165 2.4417 38 1 2.7227 -7.1484 2.0894 39 1 1.7064 -11.3026 3.9461 40 1 4.8401 -11.9340 6.0346 41 1 2.0123 -12.8111 5.0998 42 1 3.5269 -13.8127 5.1638 43 1 3.5866 -13.7294 7.6125 44 1 1.7960 -13.4720 7.4513 45 1 3.6212 -11.3220 8.0706 46 1 2.0796 -11.0550 7.1482 47 1 2.8368 -6.0566 0.2125 48 1 1.7888 -6.5066 -1.1623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332262714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:42 Heat of formation + Delta-G solvation = 82.478278 kcal Electronic energy + Delta-G solvation = -27702.321034 eV Core-core repulsion = 23794.881150 eV Total energy + Delta-G solvation = -3907.439883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60150 -39.93189 -39.35133 -37.85222 -34.75603 -33.69008 -33.07018 -31.38985 -30.81856 -28.70929 -27.86702 -26.62035 -26.50271 -24.51567 -23.65187 -22.75690 -22.10841 -21.02371 -20.24545 -20.02119 -19.49184 -18.57634 -16.96445 -16.77990 -16.61787 -16.33234 -15.97999 -15.41985 -15.02969 -14.71826 -14.55516 -14.28990 -13.83575 -13.61675 -13.39899 -13.27446 -13.12746 -13.08960 -12.74002 -12.64042 -12.36383 -11.99059 -11.63979 -11.56890 -11.51187 -11.40871 -11.21477 -11.01364 -10.79759 -10.73295 -10.60534 -10.48824 -10.21639 -10.21464 -10.09997 -9.89116 -9.60297 -9.59241 -9.00318 -8.80044 -6.83964 -5.70265 -2.97954 0.81203 1.49337 1.63314 3.05263 3.16782 3.41078 3.47932 3.52913 3.54726 3.62422 3.92022 3.92421 3.96117 4.36448 4.51235 4.63742 4.68154 4.78530 4.81138 4.84921 4.85355 4.97522 5.07365 5.14713 5.15463 5.19013 5.41696 5.52972 5.57807 5.62115 5.69258 5.73796 5.83573 5.93491 5.99752 6.02647 6.14839 6.20526 6.33776 6.39027 6.59623 6.65802 6.67120 6.88896 7.02311 7.39338 7.71429 7.76214 8.10736 8.49169 9.60164 10.19828 10.54509 11.52789 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.001894 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.707749 B =14777.684400 C =15460.623754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.097 4.097 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.090 0.910 17 N -0.703 5.703 18 C 0.604 3.396 19 O -0.543 6.543 20 C -0.100 4.100 21 C 0.091 3.909 22 N -0.351 5.351 23 C 0.121 3.879 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.145 4.145 27 N -0.064 5.064 28 N -0.203 5.203 29 C -0.123 4.123 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.409 0.591 39 H 0.202 0.798 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -31.605 12.869 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.116 4.116 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.171 4.171 15 C 0.038 3.962 16 H 0.108 0.892 17 N -0.353 5.353 18 C 0.388 3.612 19 O -0.420 6.420 20 C -0.240 4.240 21 C -0.066 4.066 22 N -0.135 5.135 23 C 0.019 3.981 24 C -0.186 4.186 25 C -0.173 4.173 26 C -0.184 4.184 27 N -0.043 5.043 28 N -0.077 5.077 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.218 0.782 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.691 -31.167 13.104 34.285 hybrid contribution -0.213 0.607 -0.070 0.647 sum 5.478 -30.560 13.034 33.672 Atomic orbital electron populations 1.69664 1.05073 1.25511 1.58065 1.24733 0.95523 0.97633 1.03275 0.86194 0.78647 0.83942 0.77461 1.21800 1.21837 1.20813 1.19249 0.91028 0.84286 1.42245 0.91263 1.42348 1.05875 0.99950 1.89367 1.20698 0.93080 0.85365 0.97600 1.22171 0.97886 0.93652 0.97929 0.90459 1.22526 1.00500 0.94700 0.97239 1.22811 0.97433 0.96056 1.00821 1.21722 0.90004 0.96548 0.87968 0.89241 1.46046 1.30447 1.19444 1.39368 1.16754 0.83156 0.81356 0.79944 1.90796 1.29320 1.58427 1.63488 1.21527 0.99997 0.96000 1.06455 1.23221 0.93454 0.99115 0.90773 1.50592 1.18912 1.16954 1.27092 1.23465 1.02459 0.83432 0.88720 1.23478 1.00782 0.95834 0.98464 1.22714 1.03812 0.95766 0.95056 1.23450 1.01125 0.97607 0.96221 1.82019 1.15718 0.90911 1.15698 1.74666 1.05570 1.22952 1.04494 1.22464 0.99778 0.94576 0.99343 0.93613 0.78266 0.96330 0.96539 0.91482 0.91019 0.90833 0.91679 0.75522 0.78161 0.84782 0.88512 0.89250 0.88943 0.89669 0.89527 0.88927 0.90767 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.84 5.49 -59.91 -0.33 -19.17 16 10 C 0.16 3.26 5.54 -4.04 -0.02 3.24 16 11 C -0.10 -1.57 2.89 -88.96 -0.26 -1.83 16 12 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.11 -1.77 6.19 -24.67 -0.15 -1.92 16 14 C -0.13 -1.80 6.54 -25.00 -0.16 -1.96 16 15 C 0.14 1.80 3.23 -66.81 -0.22 1.59 16 16 H 0.09 1.16 7.59 -51.93 -0.39 0.76 16 17 N -0.70 -8.77 5.03 -53.76 -0.27 -9.04 16 18 C 0.60 7.93 7.81 -12.47 -0.10 7.83 16 19 O -0.54 -8.20 16.53 5.28 0.09 -8.11 16 20 C -0.10 -1.18 6.99 -83.55 -0.58 -1.76 16 21 C 0.09 0.80 10.48 -16.84 -0.18 0.62 16 22 N -0.35 -2.89 3.83 -53.77 -0.21 -3.09 16 23 C 0.12 0.53 5.06 -67.12 -0.34 0.19 16 24 C -0.15 -0.34 7.44 -25.92 -0.19 -0.53 16 25 C -0.14 -0.22 8.08 -25.92 -0.21 -0.43 16 26 C -0.15 -0.50 7.88 -25.92 -0.20 -0.71 16 27 N -0.06 -0.75 13.78 60.35 0.83 0.08 16 28 N -0.20 -2.60 12.04 32.85 0.40 -2.21 16 29 C -0.12 -1.59 6.14 -25.61 -0.16 -1.75 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.38 10.35 7.63 -40.82 -0.31 10.04 16 32 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.11 7.97 -51.93 -0.41 0.70 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.41 4.89 7.99 -40.82 -0.33 4.56 16 39 H 0.20 1.16 6.78 -52.49 -0.36 0.81 16 40 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.21 6.39 -51.93 -0.33 -0.12 16 42 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.93 7.31 -51.93 -0.38 0.55 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -34.72 393.82 -8.42 -43.14 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.54 Total: 7.56 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.02 Total: -4.93 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 1.15 Total: -61.44 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.72 -8.42 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.618 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds